RNA–Protein interactions for RNA: ENST00000472096.1

CALD1-215, Transcript of caldesmon 1, human

TSL 2

Gene CALD1, Length 651 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-215	ENST00000472096	ANKRD2	Q9GZV1	360 aa		18.96	■□□□□ 0.63
CALD1-215	ENST00000472096	FARP1	Q9Y4F1	1045 aa	Predicted RBP	18.96	■□□□□ 0.63
CALD1-215	ENST00000472096	WTIP	A6NIX2	430 aa	Predicted RBP	18.95	■□□□□ 0.62
CALD1-215	ENST00000472096	BCAR3	O75815	825 aa		18.95	■□□□□ 0.62
CALD1-215	ENST00000472096	EPS15	P42566	896 aa		18.95	■□□□□ 0.62
CALD1-215	ENST00000472096	GMPS	P49915	693 aa	Predicted RBP	18.95	■□□□□ 0.62
CALD1-215	ENST00000472096	CHRND	Q07001	517 aa		18.95	■□□□□ 0.62
CALD1-215	ENST00000472096	EAPP	Q56P03	285 aa	Predicted RBP	18.95	■□□□□ 0.62
CALD1-215	ENST00000472096	PIP4P2	Q8N4L2	257 aa		18.95	■□□□□ 0.62
CALD1-215	ENST00000472096	ZNF594	Q96JF6	807 aa	Predicted RBP	18.95	■□□□□ 0.62
CALD1-215	ENST00000472096	GPRC5D	Q9NZD1	345 aa		18.95	■□□□□ 0.62
CALD1-215	ENST00000472096	PSMD14	O00487	310 aa		18.94	■□□□□ 0.62
CALD1-215	ENST00000472096	GSE1	Q14687	1217 aa		18.94	■□□□□ 0.62
CALD1-215	ENST00000472096	TAF7L	Q5H9L4	462 aa		18.94	■□□□□ 0.62
CALD1-215	ENST00000472096	PNMA8A	Q86V59	439 aa	Predicted RBP	18.94	■□□□□ 0.62
CALD1-215	ENST00000472096	LEMD3	Q9Y2U8	911 aa		18.94	■□□□□ 0.62
CALD1-215	ENST00000472096	ZNF609	O15014	1411 aa		18.93	■□□□□ 0.62
CALD1-215	ENST00000472096	APLP1	P51693	650 aa		18.93	■□□□□ 0.62
CALD1-215	ENST00000472096	ZNF804B	A4D1E1	1349 aa		18.93	■□□□□ 0.62
CALD1-215	ENST00000472096	TRPM7	Q96QT4	1865 aa		18.92	■□□□□ 0.62
CALD1-215	ENST00000472096		G3V3G9	751 aa		18.92	■□□□□ 0.62
CALD1-215	ENST00000472096	TRIM27	P14373	513 aa		18.92	■□□□□ 0.62
CALD1-215	ENST00000472096	LDHAL6A	Q6ZMR3	332 aa		18.92	■□□□□ 0.62
CALD1-215	ENST00000472096	KCNQ5	Q9NR82	932 aa		18.92	■□□□□ 0.62
CALD1-215	ENST00000472096	CEP350	Q5VT06	3117 aa		18.92	■□□□□ 0.62
CALD1-215	ENST00000472096	IPO8	O15397	1037 aa	Known RBP	18.91	■□□□□ 0.62
CALD1-215	ENST00000472096	UBTFL1	P0CB47	393 aa	Predicted RBP	18.91	■□□□□ 0.62
CALD1-215	ENST00000472096	KLRK1	P26718	216 aa		18.91	■□□□□ 0.62
CALD1-215	ENST00000472096	INTS3	Q68E01	1043 aa	Known RBP	18.91	■□□□□ 0.62
CALD1-215	ENST00000472096	ATF7IP	Q6VMQ6	1270 aa		18.91	■□□□□ 0.62
CALD1-215	ENST00000472096	FRAT1	Q92837	279 aa	Predicted RBP	18.91	■□□□□ 0.62
CALD1-215	ENST00000472096	CNNM1	Q9NRU3	951 aa		18.91	■□□□□ 0.62
CALD1-215	ENST00000472096	TNN	Q9UQP3	1299 aa		18.91	■□□□□ 0.62
CALD1-215	ENST00000472096	TAF5L	O75529	589 aa		18.9	■□□□□ 0.62
CALD1-215	ENST00000472096	KCNJ4	P48050	445 aa		18.9	■□□□□ 0.62
CALD1-215	ENST00000472096	USP50	Q70EL3	339 aa	Predicted RBP	18.9	■□□□□ 0.62
CALD1-215	ENST00000472096	TXNRD3	Q86VQ6	643 aa		18.9	■□□□□ 0.62
CALD1-215	ENST00000472096	HELB	Q8NG08	1087 aa	Predicted RBP	18.9	■□□□□ 0.62
CALD1-215	ENST00000472096	FAM212A	Q96EL1	285 aa		18.9	■□□□□ 0.62
CALD1-215	ENST00000472096	ADARB2	Q9NS39	739 aa	Known RBP	18.9	■□□□□ 0.62
CALD1-215	ENST00000472096	IRS2	Q9Y4H2	1338 aa		18.9	■□□□□ 0.62
CALD1-215	ENST00000472096	ARAP2	Q8WZ64	1704 aa		18.89	■□□□□ 0.61
CALD1-215	ENST00000472096	SHTN1	A0MZ66	631 aa		18.89	■□□□□ 0.61
CALD1-215	ENST00000472096	RPS12	P25398	132 aa	Known RBP	18.89	■□□□□ 0.61
CALD1-215	ENST00000472096	PODN	Q7Z5L7	613 aa		18.89	■□□□□ 0.61
CALD1-215	ENST00000472096	MICALL2	Q8IY33	904 aa		18.89	■□□□□ 0.61
CALD1-215	ENST00000472096	DPF2	Q92785	391 aa		18.89	■□□□□ 0.61
CALD1-215	ENST00000472096	MEIS3	Q99687	375 aa		18.89	■□□□□ 0.61
CALD1-215	ENST00000472096	PUS3	Q9BZE2	481 aa	Known RBP	18.89	■□□□□ 0.61
CALD1-215	ENST00000472096	POLR2A	P24928	1970 aa	Known RBP	18.89	■□□□□ 0.61
CALD1-215	ENST00000472096	MYH13	Q9UKX3	1938 aa		18.88	■□□□□ 0.61
CALD1-215	ENST00000472096	SNAP23	O00161	211 aa		18.88	■□□□□ 0.61
CALD1-215	ENST00000472096	VIL1	P09327	827 aa	Known RBP	18.88	■□□□□ 0.61
CALD1-215	ENST00000472096	ZKSCAN2	Q63HK3	967 aa		18.88	■□□□□ 0.61
CALD1-215	ENST00000472096	COA1	Q9GZY4	146 aa		18.88	■□□□□ 0.61
CALD1-215	ENST00000472096	MAP1S	Q66K74	1059 aa	Predicted RBP	18.87	■□□□□ 0.61
CALD1-215	ENST00000472096	C15orf52	Q6ZUT6	534 aa	Known RBP	18.87	■□□□□ 0.61
CALD1-215	ENST00000472096	TRPM4	Q8TD43	1214 aa		18.87	■□□□□ 0.61
CALD1-215	ENST00000472096	CLUAP1	Q96AJ1	413 aa		18.87	■□□□□ 0.61
CALD1-215	ENST00000472096	PASK	Q96RG2	1323 aa		18.87	■□□□□ 0.61
CALD1-215	ENST00000472096	CNOT7	Q9UIV1	285 aa	Known RBP	18.87	■□□□□ 0.61
CALD1-215	ENST00000472096	LRRFIP2	Q9Y608	721 aa	Known RBP	18.87	■□□□□ 0.61
CALD1-215	ENST00000472096	USP17L3	A6NCW0	530 aa		18.86	■□□□□ 0.61
CALD1-215	ENST00000472096	USP17L4	A6NCW7	530 aa		18.86	■□□□□ 0.61
CALD1-215	ENST00000472096	RFX5	P48382	616 aa	Predicted RBP	18.86	■□□□□ 0.61
CALD1-215	ENST00000472096	RSBN1L	Q6PCB5	846 aa	Predicted RBP	18.86	■□□□□ 0.61
CALD1-215	ENST00000472096	USP17L1	Q7RTZ2	530 aa		18.86	■□□□□ 0.61
CALD1-215	ENST00000472096	KLHDC4	Q8TBB5	520 aa		18.86	■□□□□ 0.61
CALD1-215	ENST00000472096	RIPOR2	Q9Y4F9	1068 aa		18.86	■□□□□ 0.61
CALD1-215	ENST00000472096	MROH5	Q6ZUA9	1318 aa		18.85	■□□□□ 0.61
CALD1-215	ENST00000472096		H7C1D1	291 aa		18.85	■□□□□ 0.61
CALD1-215	ENST00000472096	PLIN1	O60240	522 aa		18.85	■□□□□ 0.61
CALD1-215	ENST00000472096	ITGBL1	O95965	494 aa	Predicted RBP	18.85	■□□□□ 0.61
CALD1-215	ENST00000472096	HTRA3	P83110	453 aa		18.85	■□□□□ 0.61
CALD1-215	ENST00000472096	LRRC24	Q50LG9	513 aa		18.85	■□□□□ 0.61
CALD1-215	ENST00000472096	HDAC5	Q9UQL6	1122 aa		18.85	■□□□□ 0.61
CALD1-215	ENST00000472096	GNAI3	P08754	354 aa		18.84	■□□□□ 0.61
CALD1-215	ENST00000472096	CNTROB	Q8N137	903 aa		18.84	■□□□□ 0.61
CALD1-215	ENST00000472096	AGBL3	Q8NEM8	1001 aa		18.84	■□□□□ 0.61
CALD1-215	ENST00000472096	GML	Q99445	158 aa		18.84	■□□□□ 0.61
CALD1-215	ENST00000472096	ECM29	Q5VYK3	1845 aa		18.84	■□□□□ 0.61
CALD1-215	ENST00000472096	HIRA	P54198	1017 aa	Predicted RBP	18.83	■□□□□ 0.6
CALD1-215	ENST00000472096	PTPN12	Q05209	780 aa	Known RBP	18.83	■□□□□ 0.6
CALD1-215	ENST00000472096	UBE4A	Q14139	1066 aa		18.83	■□□□□ 0.6
CALD1-215	ENST00000472096	DACT2	Q5SW24	774 aa		18.83	■□□□□ 0.6
CALD1-215	ENST00000472096	SAMD7	Q7Z3H4	446 aa		18.83	■□□□□ 0.6
CALD1-215	ENST00000472096	TMEM57	Q8N5G2	664 aa		18.83	■□□□□ 0.6
CALD1-215	ENST00000472096	CD209	Q9NNX6	404 aa		18.83	■□□□□ 0.6
CALD1-215	ENST00000472096	EGFR	P00533	1210 aa		18.82	■□□□□ 0.6
CALD1-215	ENST00000472096	METTL24	Q5JXM2	366 aa		18.82	■□□□□ 0.6
CALD1-215	ENST00000472096	STRIP1	Q5VSL9	837 aa		18.82	■□□□□ 0.6
CALD1-215	ENST00000472096	ZNF804A	Q7Z570	1209 aa		18.82	■□□□□ 0.6
CALD1-215	ENST00000472096	VGLL2	Q8N8G2	317 aa		18.82	■□□□□ 0.6
CALD1-215	ENST00000472096	FBXW7	Q969H0	707 aa		18.82	■□□□□ 0.6
CALD1-215	ENST00000472096	MYO3B	Q8WXR4	1341 aa		18.81	■□□□□ 0.6
CALD1-215	ENST00000472096	EYA2	O00167	538 aa		18.81	■□□□□ 0.6
CALD1-215	ENST00000472096	ZNF280A	P59817	542 aa	Predicted RBP	18.81	■□□□□ 0.6
CALD1-215	ENST00000472096	KIF4B	Q2VIQ3	1234 aa		18.81	■□□□□ 0.6
CALD1-215	ENST00000472096	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	18.81	■□□□□ 0.6
CALD1-215	ENST00000472096	FTSJ3	Q8IY81	847 aa	Known RBP	18.81	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms