RNA–Protein interactions for RNA: ENST00000471455.1

CPSF4-211, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 569 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-211ENST00000471455 RPS12P25398 132 aaKnown RBP11.86□□□□□ -0.51
CPSF4-211ENST00000471455 WASHC4Q2M389 1173 aa11.86□□□□□ -0.51
CPSF4-211ENST00000471455 SLC51AQ86UW1 340 aa11.86□□□□□ -0.51
CPSF4-211ENST00000471455 PLBD2Q8NHP8 589 aa11.86□□□□□ -0.51
CPSF4-211ENST00000471455 PTCD2Q8WV60 388 aaKnown RBP11.86□□□□□ -0.51
CPSF4-211ENST00000471455 NECTIN2Q92692 538 aa11.86□□□□□ -0.51
CPSF4-211ENST00000471455 LARP6Q9BRS8 491 aaKnown RBP11.86□□□□□ -0.51
CPSF4-211ENST00000471455 DBF4Q9UBU7 674 aaPredicted RBP11.86□□□□□ -0.51
CPSF4-211ENST00000471455 CHL1O00533 1208 aa11.85□□□□□ -0.51
CPSF4-211ENST00000471455 AOC2O75106 756 aa11.85□□□□□ -0.51
CPSF4-211ENST00000471455 WDR43Q15061 677 aaKnown RBP eCLIP11.85□□□□□ -0.51
CPSF4-211ENST00000471455 TRPM4Q8TD43 1214 aa11.85□□□□□ -0.51
CPSF4-211ENST00000471455 HS3ST6Q96QI5 342 aa11.85□□□□□ -0.51
CPSF4-211ENST00000471455 CHPF2Q9P2E5 772 aa11.85□□□□□ -0.51
CPSF4-211ENST00000471455 NSFL1CQ9UNZ2 370 aaKnown RBP11.85□□□□□ -0.51
CPSF4-211ENST00000471455 DDX60Q8IY21 1712 aaKnown RBP11.85□□□□□ -0.51
CPSF4-211ENST00000471455 DUOX1Q9NRD9 1551 aa11.84□□□□□ -0.51
CPSF4-211ENST00000471455 FAM205CA6NFA0 338 aa11.84□□□□□ -0.51
CPSF4-211ENST00000471455 C6orf229H3BNL8 230 aa11.84□□□□□ -0.51
CPSF4-211ENST00000471455 HUNKP57058 714 aa11.84□□□□□ -0.51
CPSF4-211ENST00000471455 MLLT1Q03111 559 aaPredicted RBP11.84□□□□□ -0.51
CPSF4-211ENST00000471455 SF3B3Q15393 1217 aaKnown RBP11.84□□□□□ -0.51
CPSF4-211ENST00000471455 FAM161AQ3B820 660 aa11.84□□□□□ -0.51
CPSF4-211ENST00000471455 ANKRD13DQ6ZTN6 518 aa11.84□□□□□ -0.51
CPSF4-211ENST00000471455 HYPKQ9NX55 129 aa11.84□□□□□ -0.51
CPSF4-211ENST00000471455 LAS1LQ9Y4W2 734 aaKnown RBP11.84□□□□□ -0.51
CPSF4-211ENST00000471455 MYBBP1AQ9BQG0 1328 aaKnown RBP11.84□□□□□ -0.51
CPSF4-211ENST00000471455 YDJCA8MPS7 323 aa11.83□□□□□ -0.52
CPSF4-211ENST00000471455 HIRAP54198 1017 aaPredicted RBP11.83□□□□□ -0.52
CPSF4-211ENST00000471455 NEUROD2Q15784 382 aa11.83□□□□□ -0.52
CPSF4-211ENST00000471455 KRT26Q7Z3Y9 468 aa11.83□□□□□ -0.52
CPSF4-211ENST00000471455 C2orf69Q8N8R5 385 aa11.83□□□□□ -0.52
CPSF4-211ENST00000471455 OXER1Q8TDS5 423 aa11.83□□□□□ -0.52
CPSF4-211ENST00000471455 CCDC102AQ96A19 550 aa11.83□□□□□ -0.52
CPSF4-211ENST00000471455 RUNDC1Q96C34 613 aa11.83□□□□□ -0.52
CPSF4-211ENST00000471455 DCPSQ96C86 337 aaKnown RBP11.83□□□□□ -0.52
CPSF4-211ENST00000471455 DDX27Q96GQ7 796 aaKnown RBP11.83□□□□□ -0.52
CPSF4-211ENST00000471455 ISCA1Q9BUE6 129 aa11.83□□□□□ -0.52
CPSF4-211ENST00000471455 CHMP4AQ9BY43 222 aa11.83□□□□□ -0.52
CPSF4-211ENST00000471455 TSKSQ9UJT2 592 aa11.83□□□□□ -0.52
CPSF4-211ENST00000471455 PSMD14O00487 310 aa11.82□□□□□ -0.52
CPSF4-211ENST00000471455 USP48Q86UV5 1035 aa11.82□□□□□ -0.52
CPSF4-211ENST00000471455 CDAN1Q8IWY9 1227 aa11.82□□□□□ -0.52
CPSF4-211ENST00000471455 FAM89AQ96GI7 184 aa11.82□□□□□ -0.52
CPSF4-211ENST00000471455 DBNDD1Q9H9R9 158 aa11.82□□□□□ -0.52
CPSF4-211ENST00000471455 GBA2Q9HCG7 927 aaPredicted RBP11.82□□□□□ -0.52
CPSF4-211ENST00000471455 SAGE1Q9NXZ1 904 aa11.82□□□□□ -0.52
CPSF4-211ENST00000471455 IRS4O14654 1257 aaPredicted RBP11.81□□□□□ -0.52
CPSF4-211ENST00000471455 ECE2O60344 883 aa11.81□□□□□ -0.52
CPSF4-211ENST00000471455 NUDT7P0C024 238 aa11.81□□□□□ -0.52
CPSF4-211ENST00000471455 RGS19P49795 217 aa11.81□□□□□ -0.52
CPSF4-211ENST00000471455 CALD1Q05682 793 aaKnown RBP11.81□□□□□ -0.52
CPSF4-211ENST00000471455 TRIM28Q13263 835 aaKnown RBP11.81□□□□□ -0.52
CPSF4-211ENST00000471455 KIF4BQ2VIQ3 1234 aa11.81□□□□□ -0.52
CPSF4-211ENST00000471455 TBC1D10BQ4KMP7 808 aaPredicted RBP11.81□□□□□ -0.52
CPSF4-211ENST00000471455 RGMBQ6NW40 437 aa11.81□□□□□ -0.52
CPSF4-211ENST00000471455 SULF1Q8IWU6 871 aa11.81□□□□□ -0.52
CPSF4-211ENST00000471455 CCDC146Q8IYE0 955 aa11.81□□□□□ -0.52
CPSF4-211ENST00000471455 CELF1Q92879 486 aaKnown RBP11.81□□□□□ -0.52
CPSF4-211ENST00000471455 ZC3H12CQ9C0D7 883 aaKnown RBP11.81□□□□□ -0.52
CPSF4-211ENST00000471455 MCOLN1Q9GZU1 580 aa11.81□□□□□ -0.52
CPSF4-211ENST00000471455 ATP5J2-PTCD1G3V325 749 aa11.8□□□□□ -0.52
CPSF4-211ENST00000471455 RPS8P62241 208 aaKnown RBP11.8□□□□□ -0.52
CPSF4-211ENST00000471455 GPSM2P81274 684 aa11.8□□□□□ -0.52
CPSF4-211ENST00000471455 DGKZQ13574 1117 aa11.8□□□□□ -0.52
CPSF4-211ENST00000471455 KRT24Q2M2I5 525 aa11.8□□□□□ -0.52
CPSF4-211ENST00000471455 SAMD7Q7Z3H4 446 aa11.8□□□□□ -0.52
CPSF4-211ENST00000471455 RIC3Q7Z5B4 369 aa11.8□□□□□ -0.52
CPSF4-211ENST00000471455 ZBTB38Q8NAP3 1195 aaPredicted RBP11.8□□□□□ -0.52
CPSF4-211ENST00000471455 TBC1D16Q8TBP0 767 aa11.8□□□□□ -0.52
CPSF4-211ENST00000471455 EMILIN3Q9NT22 766 aa11.8□□□□□ -0.52
CPSF4-211ENST00000471455 ANKIB1Q9P2G1 1089 aa11.8□□□□□ -0.52
CPSF4-211ENST00000471455 ZNF609O15014 1411 aa11.79□□□□□ -0.52
CPSF4-211ENST00000471455 TAF1P21675 1872 aa11.79□□□□□ -0.52
CPSF4-211ENST00000471455 SHTN1A0MZ66 631 aa11.79□□□□□ -0.52
CPSF4-211ENST00000471455 ZNF157P51786 506 aaPredicted RBP11.79□□□□□ -0.52
CPSF4-211ENST00000471455 CCDC152Q4G0S7 254 aa11.79□□□□□ -0.52
CPSF4-211ENST00000471455 DUSP27Q5VZP5 1158 aa11.79□□□□□ -0.52
CPSF4-211ENST00000471455 PODXL2Q9NZ53 605 aa11.79□□□□□ -0.52
CPSF4-211ENST00000471455 POLLQ9UGP5 575 aa11.79□□□□□ -0.52
CPSF4-211ENST00000471455 GGA1Q9UJY5 639 aa11.79□□□□□ -0.52
CPSF4-211ENST00000471455 CASP8AP2Q9UKL3 1982 aa11.78□□□□□ -0.52
CPSF4-211ENST00000471455 UFL1O94874 794 aa11.78□□□□□ -0.52
CPSF4-211ENST00000471455 DDX58O95786 925 aaKnown RBP11.78□□□□□ -0.52
CPSF4-211ENST00000471455 FKBP1BP68106 108 aa11.78□□□□□ -0.52
CPSF4-211ENST00000471455 RTL5Q5HYW3 569 aaPredicted RBP11.78□□□□□ -0.52
CPSF4-211ENST00000471455 RBM26Q5T8P6 1007 aaKnown RBP11.78□□□□□ -0.52
CPSF4-211ENST00000471455 TSHZ2Q9NRE2 1034 aa11.78□□□□□ -0.52
CPSF4-211ENST00000471455 GGA3Q9NZ52 723 aa11.78□□□□□ -0.52
CPSF4-211ENST00000471455 RTL9Q8NET4 1388 aa11.78□□□□□ -0.52
CPSF4-211ENST00000471455 ADM5C9JUS6 153 aa11.77□□□□□ -0.53
CPSF4-211ENST00000471455 VIL1P09327 827 aaKnown RBP11.77□□□□□ -0.53
CPSF4-211ENST00000471455 VARS2Q5ST30 1063 aaKnown RBP11.77□□□□□ -0.53
CPSF4-211ENST00000471455 CCDC191Q8NCU4 936 aa11.77□□□□□ -0.53
CPSF4-211ENST00000471455 AGBL3Q8NEM8 1001 aa11.77□□□□□ -0.53
CPSF4-211ENST00000471455 KRTAP3-3Q9BYR6 98 aa11.77□□□□□ -0.53
CPSF4-211ENST00000471455 KRTAP3-2Q9BYR7 98 aa11.77□□□□□ -0.53
CPSF4-211ENST00000471455 IFT57Q9NWB7 429 aa11.77□□□□□ -0.53
CPSF4-211ENST00000471455 XDHP47989 1333 aa11.77□□□□□ -0.53
CPSF4-211ENST00000471455 ZNF316A6NFI3 1004 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms