RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 RIC1Q4ADV7 1423 aa20.22■□□□□ 0.83
SMARCD3-206ENST00000470588 COL24A1Q17RW2 1714 aa20.22■□□□□ 0.83
SMARCD3-206ENST00000470588 UBR3Q6ZT12 1888 aa20.22■□□□□ 0.83
SMARCD3-206ENST00000470588 PHF14O94880 888 aa20.21■□□□□ 0.83
SMARCD3-206ENST00000470588 PDE8BO95263 885 aa20.21■□□□□ 0.83
SMARCD3-206ENST00000470588 GTF2E1P29083 439 aaPredicted RBP20.21■□□□□ 0.83
SMARCD3-206ENST00000470588 FKBP4Q02790 459 aaKnown RBP eCLIP20.21■□□□□ 0.83
SMARCD3-206ENST00000470588 CCDC152Q4G0S7 254 aa20.21■□□□□ 0.83
SMARCD3-206ENST00000470588 L1TD1Q5T7N2 865 aaKnown RBP20.21■□□□□ 0.83
SMARCD3-206ENST00000470588 CCDC129Q6ZRS4 1044 aa20.21■□□□□ 0.83
SMARCD3-206ENST00000470588 VGLL2Q8N8G2 317 aa20.21■□□□□ 0.83
SMARCD3-206ENST00000470588 LRRC4BQ9NT99 713 aa20.21■□□□□ 0.83
SMARCD3-206ENST00000470588 MROH5Q6ZUA9 1318 aa20.21■□□□□ 0.83
SMARCD3-206ENST00000470588 HCLS1P14317 486 aaPredicted RBP20.21■□□□□ 0.83
SMARCD3-206ENST00000470588 SRP68Q9UHB9 627 aaKnown RBP20.21■□□□□ 0.83
SMARCD3-206ENST00000470588 WDR33Q9C0J8 1336 aaKnown RBP20.2■□□□□ 0.82
SMARCD3-206ENST00000470588 CHGBP05060 677 aa20.2■□□□□ 0.82
SMARCD3-206ENST00000470588 TBC1D9BQ66K14 1250 aa20.2■□□□□ 0.82
SMARCD3-206ENST00000470588 BICDL1Q6ZP65 573 aa20.2■□□□□ 0.82
SMARCD3-206ENST00000470588 GZF1Q9H116 711 aaPredicted RBP20.2■□□□□ 0.82
SMARCD3-206ENST00000470588 SMC3Q9UQE7 1217 aa20.2■□□□□ 0.82
SMARCD3-206ENST00000470588 TXNRD1Q16881 649 aa20.19■□□□□ 0.82
SMARCD3-206ENST00000470588 BCL2L12Q9HB09 334 aa20.19■□□□□ 0.82
SMARCD3-206ENST00000470588 LMBRD1Q9NUN5 540 aa20.19■□□□□ 0.82
SMARCD3-206ENST00000470588 RTL9Q8NET4 1388 aa20.19■□□□□ 0.82
SMARCD3-206ENST00000470588 KLHL40Q2TBA0 621 aa20.18■□□□□ 0.82
SMARCD3-206ENST00000470588 NEK1Q96PY6 1258 aa20.18■□□□□ 0.82
SMARCD3-206ENST00000470588 LARP6Q9BRS8 491 aaKnown RBP20.18■□□□□ 0.82
SMARCD3-206ENST00000470588 PLSCR1O15162 318 aa20.18■□□□□ 0.82
SMARCD3-206ENST00000470588 APBA3O96018 575 aa20.18■□□□□ 0.82
SMARCD3-206ENST00000470588 ZAP70P43403 619 aa20.18■□□□□ 0.82
SMARCD3-206ENST00000470588 NBPF5PQ86XG9 351 aaPredicted RBP20.18■□□□□ 0.82
SMARCD3-206ENST00000470588 LRP5O75197 1615 aa20.17■□□□□ 0.82
SMARCD3-206ENST00000470588 UQCRFS1P1P0C7P4 283 aa20.17■□□□□ 0.82
SMARCD3-206ENST00000470588 PDIA4P13667 645 aaKnown RBP20.17■□□□□ 0.82
SMARCD3-206ENST00000470588 SMIM5Q71RC9 77 aa20.17■□□□□ 0.82
SMARCD3-206ENST00000470588 LPIN2Q92539 896 aa20.17■□□□□ 0.82
SMARCD3-206ENST00000470588 ISY1Q9ULR0 285 aaKnown RBP20.17■□□□□ 0.82
SMARCD3-206ENST00000470588 DDX49Q9Y6V7 483 aaKnown RBP20.17■□□□□ 0.82
SMARCD3-206ENST00000470588 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 FSD2A1L4K1 749 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 GOLGA6L3A6NEY3 463 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 LARGE1O95461 756 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 CYP21A2P08686 494 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 HMGB1P09429 215 aaKnown RBP20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 FGFR2P21802 821 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 SCARF1Q14162 830 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 TTF1Q15361 905 aaPredicted RBP20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 PUM3Q15397 648 aaKnown RBP20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 ME3Q16798 604 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 ZSCAN25Q6NSZ9 544 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 MPHOSPH8Q99549 860 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 TPCN1Q9ULQ1 816 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 TAF6LQ9Y6J9 622 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 MAST3O60307 1309 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 RGPD3A6NKT7 1758 aaPredicted RBP20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 RGPD4Q7Z3J3 1758 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 NPHP1O15259 732 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 HSPD1P10809 573 aaKnown RBP20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 ERFEQ4G0M1 354 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 TPTE2Q6XPS3 522 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 CCDC83Q8IWF9 413 aa20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.16■□□□□ 0.82
SMARCD3-206ENST00000470588 TNS1Q9HBL0 1735 aaKnown RBP20.15■□□□□ 0.82
SMARCD3-206ENST00000470588 CASZ1Q86V15 1759 aa20.15■□□□□ 0.82
SMARCD3-206ENST00000470588 IGHMBP2P38935 993 aaKnown RBP20.15■□□□□ 0.82
SMARCD3-206ENST00000470588 SLFNL1Q499Z3 407 aa20.15■□□□□ 0.82
SMARCD3-206ENST00000470588 FOXD4L5Q5VV16 416 aaPredicted RBP20.15■□□□□ 0.82
SMARCD3-206ENST00000470588 CARMIL3Q8ND23 1372 aa20.15■□□□□ 0.82
SMARCD3-206ENST00000470588 FOXD4L4Q8WXT5 416 aaPredicted RBP20.15■□□□□ 0.82
SMARCD3-206ENST00000470588 OSBP2Q969R2 916 aa20.15■□□□□ 0.82
SMARCD3-206ENST00000470588 RGS17Q9UGC6 210 aaPredicted RBP20.15■□□□□ 0.82
SMARCD3-206ENST00000470588 PRPF40AO75400 957 aaKnown RBP20.14■□□□□ 0.81
SMARCD3-206ENST00000470588 SLC5A1P13866 664 aa20.14■□□□□ 0.81
SMARCD3-206ENST00000470588 ARID4AP29374 1257 aaPredicted RBP20.14■□□□□ 0.81
SMARCD3-206ENST00000470588 TOB2Q14106 344 aaPredicted RBP20.14■□□□□ 0.81
SMARCD3-206ENST00000470588 POTEAQ6S8J7 498 aa20.14■□□□□ 0.81
SMARCD3-206ENST00000470588 APPBP2Q92624 585 aa20.14■□□□□ 0.81
SMARCD3-206ENST00000470588 CDC5LQ99459 802 aaKnown RBP20.14■□□□□ 0.81
SMARCD3-206ENST00000470588 CTNNA3Q9UI47 895 aa20.14■□□□□ 0.81
SMARCD3-206ENST00000470588 M0R2C6 588 aa20.13■□□□□ 0.81
SMARCD3-206ENST00000470588 MCAMP43121 646 aa20.13■□□□□ 0.81
SMARCD3-206ENST00000470588 SLC10A5Q5PT55 438 aa20.13■□□□□ 0.81
SMARCD3-206ENST00000470588 AMIGO3Q86WK7 504 aa20.13■□□□□ 0.81
SMARCD3-206ENST00000470588 STX6O43752 255 aa20.13■□□□□ 0.81
SMARCD3-206ENST00000470588 ZSCAN22P10073 491 aaPredicted RBP20.13■□□□□ 0.81
SMARCD3-206ENST00000470588 GJB2P29033 226 aa20.13■□□□□ 0.81
SMARCD3-206ENST00000470588 WASHC4Q2M389 1173 aa20.13■□□□□ 0.81
SMARCD3-206ENST00000470588 CCDC102BQ68D86 513 aa20.13■□□□□ 0.81
SMARCD3-206ENST00000470588 SEC31BQ9NQW1 1179 aa20.13■□□□□ 0.81
SMARCD3-206ENST00000470588 SYT1P21579 422 aa20.12■□□□□ 0.81
SMARCD3-206ENST00000470588 SF3B3Q15393 1217 aaKnown RBP20.12■□□□□ 0.81
SMARCD3-206ENST00000470588 ST3GAL1Q11201 340 aa20.11■□□□□ 0.81
SMARCD3-206ENST00000470588 DHX32Q7L7V1 743 aaKnown RBP20.11■□□□□ 0.81
SMARCD3-206ENST00000470588 NECAB1Q8N987 351 aa20.11■□□□□ 0.81
SMARCD3-206ENST00000470588 HELBQ8NG08 1087 aaPredicted RBP20.11■□□□□ 0.81
SMARCD3-206ENST00000470588 NLRP3Q96P20 1036 aa20.11■□□□□ 0.81
SMARCD3-206ENST00000470588 COL9A3Q14050 684 aaPredicted RBP20.11■□□□□ 0.81
SMARCD3-206ENST00000470588 ADD2P35612 726 aa20.1■□□□□ 0.81
SMARCD3-206ENST00000470588 PHKA1P46020 1223 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms