RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 ZNF652Q9Y2D9 606 aa7.12□□□□□ -1.27
PTPN4-209ENST00000469511 CEP290O15078 2479 aa7.11□□□□□ -1.27
PTPN4-209ENST00000469511 TRIOBPQ9H2D6 2365 aa7.11□□□□□ -1.27
PTPN4-209ENST00000469511 ANKRD36CQ5JPF3 1778 aa7.11□□□□□ -1.27
PTPN4-209ENST00000469511 ABCC4O15439 1325 aa7.11□□□□□ -1.27
PTPN4-209ENST00000469511 NTSR2O95665 410 aa7.11□□□□□ -1.27
PTPN4-209ENST00000469511 TBC1D8O95759 1140 aa7.11□□□□□ -1.27
PTPN4-209ENST00000469511 SNRPA1P09661 255 aaKnown RBP7.11□□□□□ -1.27
PTPN4-209ENST00000469511 ZNF157P51786 506 aaPredicted RBP7.11□□□□□ -1.27
PTPN4-209ENST00000469511 AMHR2Q16671 573 aa7.11□□□□□ -1.27
PTPN4-209ENST00000469511 CC2D1BQ5T0F9 858 aaKnown RBP7.11□□□□□ -1.27
PTPN4-209ENST00000469511 MOB2Q70IA6 237 aa7.11□□□□□ -1.27
PTPN4-209ENST00000469511 ZNF296Q8WUU4 475 aaPredicted RBP7.11□□□□□ -1.27
PTPN4-209ENST00000469511 OTUD5Q96G74 571 aa7.11□□□□□ -1.27
PTPN4-209ENST00000469511 RBM17Q96I25 401 aaKnown RBP7.11□□□□□ -1.27
PTPN4-209ENST00000469511 ZBTB3Q9H5J0 574 aa7.11□□□□□ -1.27
PTPN4-209ENST00000469511 SAGE1Q9NXZ1 904 aa7.11□□□□□ -1.27
PTPN4-209ENST00000469511 KNSTRNQ9Y448 316 aa7.11□□□□□ -1.27
PTPN4-209ENST00000469511 KIF7Q2M1P5 1343 aa7.1□□□□□ -1.27
PTPN4-209ENST00000469511 PSMD14O00487 310 aa7.1□□□□□ -1.27
PTPN4-209ENST00000469511 SLC10A3P09131 477 aa7.1□□□□□ -1.27
PTPN4-209ENST00000469511 HOXB1P14653 301 aaPredicted RBP7.1□□□□□ -1.27
PTPN4-209ENST00000469511 PRKAR2BP31323 418 aa7.1□□□□□ -1.27
PTPN4-209ENST00000469511 FXR1P51114 621 aaKnown RBP eCLIP7.1□□□□□ -1.27
PTPN4-209ENST00000469511 C6orf132Q5T0Z8 1188 aa7.1□□□□□ -1.27
PTPN4-209ENST00000469511 KRT26Q7Z3Y9 468 aa7.1□□□□□ -1.27
PTPN4-209ENST00000469511 RASAL3Q86YV0 1011 aa7.1□□□□□ -1.27
PTPN4-209ENST00000469511 ZNF34Q8IZ26 560 aa7.1□□□□□ -1.27
PTPN4-209ENST00000469511 GAS2L2Q8NHY3 880 aa7.1□□□□□ -1.27
PTPN4-209ENST00000469511 RTFDC1Q9BY42 306 aaPredicted RBP7.1□□□□□ -1.27
PTPN4-209ENST00000469511 DAXXQ9UER7 740 aaPredicted RBP7.1□□□□□ -1.27
PTPN4-209ENST00000469511 RRP7AQ9Y3A4 280 aaKnown RBP7.1□□□□□ -1.27
PTPN4-209ENST00000469511 ATP6V0A2Q9Y487 856 aa7.1□□□□□ -1.27
PTPN4-209ENST00000469511 KDM3BQ7LBC6 1761 aa7.1□□□□□ -1.27
PTPN4-209ENST00000469511 MAP3K15Q6ZN16 1313 aa7.09□□□□□ -1.27
PTPN4-209ENST00000469511 PER1O15534 1290 aaPredicted RBP7.09□□□□□ -1.27
PTPN4-209ENST00000469511 MYL6BP14649 208 aa7.09□□□□□ -1.27
PTPN4-209ENST00000469511 KIAA2012Q0VF49 1180 aa7.09□□□□□ -1.27
PTPN4-209ENST00000469511 PRAMEF18Q5VWM3 479 aa7.09□□□□□ -1.27
PTPN4-209ENST00000469511 MPNDQ8N594 471 aa7.09□□□□□ -1.27
PTPN4-209ENST00000469511 C2orf69Q8N8R5 385 aa7.09□□□□□ -1.27
PTPN4-209ENST00000469511 THUMPD2Q9BTF0 503 aaKnown RBP7.09□□□□□ -1.27
PTPN4-209ENST00000469511 RSPH6AQ9H0K4 717 aa7.09□□□□□ -1.27
PTPN4-209ENST00000469511 KDM4CQ9H3R0 1056 aa7.09□□□□□ -1.27
PTPN4-209ENST00000469511 DBNDD1Q9H9R9 158 aa7.09□□□□□ -1.27
PTPN4-209ENST00000469511 RBM27Q9P2N5 1060 aaKnown RBP7.09□□□□□ -1.27
PTPN4-209ENST00000469511 LHX6Q9UPM6 363 aa7.09□□□□□ -1.27
PTPN4-209ENST00000469511 LRRC37AA6NMS7 1700 aa7.08□□□□□ -1.28
PTPN4-209ENST00000469511 DDX60Q8IY21 1712 aaKnown RBP7.08□□□□□ -1.28
PTPN4-209ENST00000469511 ANXA1P04083 346 aa7.08□□□□□ -1.28
PTPN4-209ENST00000469511 HCLS1P14317 486 aaPredicted RBP7.08□□□□□ -1.28
PTPN4-209ENST00000469511 TNIP1Q15025 636 aa7.08□□□□□ -1.28
PTPN4-209ENST00000469511 PPP4R3BQ5MIZ7 849 aa7.08□□□□□ -1.28
PTPN4-209ENST00000469511 DPP8Q6V1X1 898 aaPredicted RBP7.08□□□□□ -1.28
PTPN4-209ENST00000469511 SP8Q8IXZ3 490 aa7.08□□□□□ -1.28
PTPN4-209ENST00000469511 ADAM33Q9BZ11 813 aa7.08□□□□□ -1.28
PTPN4-209ENST00000469511 NYXQ9GZU5 481 aa7.08□□□□□ -1.28
PTPN4-209ENST00000469511 RTL9Q8NET4 1388 aa7.08□□□□□ -1.28
PTPN4-209ENST00000469511 ERVV-1B6SEH8 477 aa7.07□□□□□ -1.28
PTPN4-209ENST00000469511 UBE2Q2LH0YL09 131 aa7.07□□□□□ -1.28
PTPN4-209ENST00000469511 H7C1D1 291 aa7.07□□□□□ -1.28
PTPN4-209ENST00000469511 GPR25O00155 361 aa7.07□□□□□ -1.28
PTPN4-209ENST00000469511 CAP1Q01518 475 aa7.07□□□□□ -1.28
PTPN4-209ENST00000469511 SLC10A5Q5PT55 438 aa7.07□□□□□ -1.28
PTPN4-209ENST00000469511 TTC13Q8NBP0 860 aa7.07□□□□□ -1.28
PTPN4-209ENST00000469511 CDCA5Q96FF9 252 aa7.07□□□□□ -1.28
PTPN4-209ENST00000469511 NLRP3Q96P20 1036 aa7.07□□□□□ -1.28
PTPN4-209ENST00000469511 GGA3Q9NZ52 723 aa7.07□□□□□ -1.28
PTPN4-209ENST00000469511 HDAC9Q9UKV0 1011 aa7.07□□□□□ -1.28
PTPN4-209ENST00000469511 RBBP6Q7Z6E9 1792 aaKnown RBP7.07□□□□□ -1.28
PTPN4-209ENST00000469511 PSME4Q14997 1843 aa7.06□□□□□ -1.28
PTPN4-209ENST00000469511 CDHR2Q9BYE9 1310 aa7.06□□□□□ -1.28
PTPN4-209ENST00000469511 EIF4G2P78344 907 aaKnown RBP eCLIP7.06□□□□□ -1.28
PTPN4-209ENST00000469511 PROSER3Q2NL68 480 aa7.06□□□□□ -1.28
PTPN4-209ENST00000469511 GRIPAP1Q4V328 841 aa7.06□□□□□ -1.28
PTPN4-209ENST00000469511 LHX8Q68G74 356 aa7.06□□□□□ -1.28
PTPN4-209ENST00000469511 FBXO46Q6PJ61 603 aaPredicted RBP7.06□□□□□ -1.28
PTPN4-209ENST00000469511 GIGYF2Q6Y7W6 1299 aaKnown RBP7.06□□□□□ -1.28
PTPN4-209ENST00000469511 LRP10Q7Z4F1 713 aa7.06□□□□□ -1.28
PTPN4-209ENST00000469511 DPF2Q92785 391 aa7.06□□□□□ -1.28
PTPN4-209ENST00000469511 DCPSQ96C86 337 aaKnown RBP7.06□□□□□ -1.28
PTPN4-209ENST00000469511 VPS33BQ9H267 617 aa7.06□□□□□ -1.28
PTPN4-209ENST00000469511 POLLQ9UGP5 575 aa7.06□□□□□ -1.28
PTPN4-209ENST00000469511 IBTKQ9P2D0 1353 aaPredicted RBP7.06□□□□□ -1.28
PTPN4-209ENST00000469511 EN2P19622 333 aaPredicted RBP7.05□□□□□ -1.28
PTPN4-209ENST00000469511 EIF4A1P60842 406 aaKnown RBP7.05□□□□□ -1.28
PTPN4-209ENST00000469511 GPSM2P81274 684 aa7.05□□□□□ -1.28
PTPN4-209ENST00000469511 TAF7Q15545 349 aaPredicted RBP7.05□□□□□ -1.28
PTPN4-209ENST00000469511 KIF4BQ2VIQ3 1234 aa7.05□□□□□ -1.28
PTPN4-209ENST00000469511 ANGEL2Q5VTE6 544 aaKnown RBP7.05□□□□□ -1.28
PTPN4-209ENST00000469511 PARP9Q8IXQ6 854 aa7.05□□□□□ -1.28
PTPN4-209ENST00000469511 SUPT20HQ8NEM7 779 aa7.05□□□□□ -1.28
PTPN4-209ENST00000469511 CELF1Q92879 486 aaKnown RBP7.05□□□□□ -1.28
PTPN4-209ENST00000469511 GCC1Q96CN9 775 aa7.05□□□□□ -1.28
PTPN4-209ENST00000469511 FZD1Q9UP38 647 aa7.05□□□□□ -1.28
PTPN4-209ENST00000469511 GTF3C3Q9Y5Q9 886 aa7.05□□□□□ -1.28
PTPN4-209ENST00000469511 ZNF646O15015 1829 aaPredicted RBP7.05□□□□□ -1.28
PTPN4-209ENST00000469511 SZT2Q5T011 3432 aa7.04□□□□□ -1.28
PTPN4-209ENST00000469511 MKI67P46013 3256 aaKnown RBP7.04□□□□□ -1.28
PTPN4-209ENST00000469511 ZSWIM8A7E2V4 1837 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms