RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 CDK2AP1O14519 115 aa7.76□□□□□ -1.17
SYNE1-219ENST00000469439 RAD21O60216 631 aa7.76□□□□□ -1.17
SYNE1-219ENST00000469439 NEFMP07197 916 aa7.76□□□□□ -1.17
SYNE1-219ENST00000469439 FIGNL1Q6PIW4 674 aa7.76□□□□□ -1.17
SYNE1-219ENST00000469439 C1orf229Q6ZS94 237 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-219ENST00000469439 PODNQ7Z5L7 613 aa7.76□□□□□ -1.17
SYNE1-219ENST00000469439 NLRP8Q86W28 1048 aa7.76□□□□□ -1.17
SYNE1-219ENST00000469439 ADAMTS19Q8TE59 1207 aa7.76□□□□□ -1.17
SYNE1-219ENST00000469439 GDF2Q9UK05 429 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-219ENST00000469439 POM121CA8CG34 1229 aa7.75□□□□□ -1.17
SYNE1-219ENST00000469439 USP17L5A8MUK1 530 aa7.75□□□□□ -1.17
SYNE1-219ENST00000469439 C2CD2LO14523 706 aa7.75□□□□□ -1.17
SYNE1-219ENST00000469439 NGEFQ8N5V2 710 aa7.75□□□□□ -1.17
SYNE1-219ENST00000469439 BEND7Q8N7W2 519 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-219ENST00000469439 GOLGA6L1Q8N7Z2 621 aa7.75□□□□□ -1.17
SYNE1-219ENST00000469439 ZNF358Q9NW07 568 aa7.75□□□□□ -1.17
SYNE1-219ENST00000469439 ZDHHC3Q9NYG2 299 aa7.75□□□□□ -1.17
SYNE1-219ENST00000469439 CPSF1Q10570 1443 aaKnown RBP7.75□□□□□ -1.17
SYNE1-219ENST00000469439 NSD3Q9BZ95 1437 aa7.75□□□□□ -1.17
SYNE1-219ENST00000469439 A0A1W2PP64 1363 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 ARHGEF10O15013 1369 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 LRRC7Q96NW7 1537 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 BMP4P12644 408 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 FOXK2Q01167 660 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 CTBSQ01459 385 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 CC2D1BQ5T0F9 858 aaKnown RBP7.74□□□□□ -1.17
SYNE1-219ENST00000469439 SLCO4C1Q6ZQN7 724 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 ABTB2Q8N961 1025 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 AIDAQ96BJ3 306 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 ZCCHC2Q9C0B9 1178 aaKnown RBP7.74□□□□□ -1.17
SYNE1-219ENST00000469439 PCDHGC4Q9Y5F7 938 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 TTC21BQ7Z4L5 1316 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 C1orf167Q5SNV9 1468 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 STRCQ7RTU9 1775 aa7.74□□□□□ -1.17
SYNE1-219ENST00000469439 SBNO1A3KN83 1393 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 KIF24Q5T7B8 1368 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 USP6P35125 1406 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 BACH1O14867 736 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 FYB1O15117 783 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 IGHA1P01876 353 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 EPHA4P54764 986 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 WDR43Q15061 677 aaKnown RBP eCLIP7.73□□□□□ -1.17
SYNE1-219ENST00000469439 GPAT2Q6NUI2 795 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 KRT28Q7Z3Y7 464 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 DEPDC4Q8N2C3 294 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.73□□□□□ -1.17
SYNE1-219ENST00000469439 GALNT6Q8NCL4 622 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 PMFBP1Q8TBY8 1022 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 LRRC59Q96AG4 307 aaKnown RBP7.73□□□□□ -1.17
SYNE1-219ENST00000469439 DCAF5Q96JK2 942 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 UCN2Q96RP3 112 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 SCHIP1Q9P0W5 487 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-219ENST00000469439 HCN2Q9UL51 889 aa7.73□□□□□ -1.17
SYNE1-219ENST00000469439 PARD3Q8TEW0 1356 aa7.72□□□□□ -1.17
SYNE1-219ENST00000469439 ITSN1Q15811 1721 aa7.72□□□□□ -1.17
SYNE1-219ENST00000469439 A0A1W2PNR3 127 aa7.72□□□□□ -1.17
SYNE1-219ENST00000469439 ATXN7O15265 892 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-219ENST00000469439 FOXO3O43524 673 aa7.72□□□□□ -1.17
SYNE1-219ENST00000469439 TATP17735 454 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-219ENST00000469439 SNRPNP63162 240 aaKnown RBP7.72□□□□□ -1.17
SYNE1-219ENST00000469439 PLEKHM2Q8IWE5 1019 aa7.72□□□□□ -1.17
SYNE1-219ENST00000469439 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.72□□□□□ -1.17
SYNE1-219ENST00000469439 EDARADDQ8WWZ3 215 aa7.72□□□□□ -1.17
SYNE1-219ENST00000469439 MRS2Q9HD23 443 aa7.72□□□□□ -1.17
SYNE1-219ENST00000469439 GGA1Q9UJY5 639 aa7.72□□□□□ -1.17
SYNE1-219ENST00000469439 PRR36Q9H6K5 1346 aa7.72□□□□□ -1.17
SYNE1-219ENST00000469439 AATKQ6ZMQ8 1374 aa7.71□□□□□ -1.17
SYNE1-219ENST00000469439 ARAFP10398 606 aa7.71□□□□□ -1.18
SYNE1-219ENST00000469439 ZDHHC1Q8WTX9 485 aa7.71□□□□□ -1.18
SYNE1-219ENST00000469439 ZIC5Q96T25 663 aa7.71□□□□□ -1.18
SYNE1-219ENST00000469439 INSRP06213 1382 aa7.71□□□□□ -1.18
SYNE1-219ENST00000469439 USP31Q70CQ4 1352 aa7.71□□□□□ -1.18
SYNE1-219ENST00000469439 MST1RQ04912 1400 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 KIF1AQ12756 1690 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-219ENST00000469439 DCDC2BA2VCK2 349 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 USP17L3A6NCW0 530 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 USP17L4A6NCW7 530 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 FAM157BP0CG42 384 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 MAPTP10636 758 aaKnown RBP7.7□□□□□ -1.18
SYNE1-219ENST00000469439 HOXB4P17483 251 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-219ENST00000469439 TXLNAP40222 546 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 TNP2Q05952 138 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 PLA2G4EQ3MJ16 856 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 ARSJQ5FYB0 599 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-219ENST00000469439 FAM182BQ5T319 152 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 USP17L2Q6R6M4 530 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 USP17L1Q7RTZ2 530 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 KIAA1024Q9UPX6 916 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 USP32Q8NFA0 1604 aa7.7□□□□□ -1.18
SYNE1-219ENST00000469439 FMN2Q9NZ56 1722 aa7.69□□□□□ -1.18
SYNE1-219ENST00000469439 UBAP1LF5GYI3 381 aa7.69□□□□□ -1.18
SYNE1-219ENST00000469439 ITGB2P05107 769 aa7.69□□□□□ -1.18
SYNE1-219ENST00000469439 PPP2R1AP30153 589 aa7.69□□□□□ -1.18
SYNE1-219ENST00000469439 AMPHP49418 695 aa7.69□□□□□ -1.18
SYNE1-219ENST00000469439 TEAD4Q15561 434 aa7.69□□□□□ -1.18
SYNE1-219ENST00000469439 SAMD5Q5TGI4 173 aa7.69□□□□□ -1.18
SYNE1-219ENST00000469439 BRINP3Q76B58 766 aa7.69□□□□□ -1.18
SYNE1-219ENST00000469439 TRIM50Q86XT4 487 aa7.69□□□□□ -1.18
SYNE1-219ENST00000469439 ORAI2Q96SN7 254 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms