RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 SCARF1Q14162 830 aa26.91■■□□□ 1.9
COL9A3-207ENST00000467819 ANGEL2Q5VTE6 544 aaKnown RBP26.91■■□□□ 1.9
COL9A3-207ENST00000467819 RGMBQ6NW40 437 aa26.91■■□□□ 1.9
COL9A3-207ENST00000467819 ABHD8Q96I13 439 aa26.91■■□□□ 1.9
COL9A3-207ENST00000467819 MYH16Q9H6N6 1097 aa26.91■■□□□ 1.9
COL9A3-207ENST00000467819 CA12O43570 354 aa26.9■■□□□ 1.9
COL9A3-207ENST00000467819 VAMP4O75379 141 aa26.9■■□□□ 1.9
COL9A3-207ENST00000467819 ITGA6P23229 1130 aa26.9■■□□□ 1.9
COL9A3-207ENST00000467819 EXOSC9Q06265 439 aaKnown RBP26.9■■□□□ 1.9
COL9A3-207ENST00000467819 FAM161AQ3B820 660 aa26.9■■□□□ 1.9
COL9A3-207ENST00000467819 FBXW7Q969H0 707 aa26.9■■□□□ 1.9
COL9A3-207ENST00000467819 CDCA5Q96FF9 252 aa26.9■■□□□ 1.9
COL9A3-207ENST00000467819 PLA2G12BQ9BX93 195 aa26.9■■□□□ 1.9
COL9A3-207ENST00000467819 MYOZ2Q9NPC6 264 aa26.9■■□□□ 1.9
COL9A3-207ENST00000467819 ZEB1P37275 1124 aaPredicted RBP26.89■■□□□ 1.9
COL9A3-207ENST00000467819 CASP7P55210 303 aa26.89■■□□□ 1.9
COL9A3-207ENST00000467819 WDR63Q8IWG1 891 aa26.89■■□□□ 1.9
COL9A3-207ENST00000467819 LINS1Q8NG48 757 aa26.89■■□□□ 1.9
COL9A3-207ENST00000467819 AKAP11Q9UKA4 1901 aa26.88■■□□□ 1.89
COL9A3-207ENST00000467819 ZNF316A6NFI3 1004 aaPredicted RBP26.88■■□□□ 1.89
COL9A3-207ENST00000467819 MXD3Q9BW11 206 aa26.88■■□□□ 1.89
COL9A3-207ENST00000467819 A0A1B0GUL6 1792 aa26.88■■□□□ 1.89
COL9A3-207ENST00000467819 ZNF157P51786 506 aaPredicted RBP26.87■■□□□ 1.89
COL9A3-207ENST00000467819 TXNRD3Q86VQ6 643 aa26.87■■□□□ 1.89
COL9A3-207ENST00000467819 MPHOSPH8Q99549 860 aa26.87■■□□□ 1.89
COL9A3-207ENST00000467819 LEMD3Q9Y2U8 911 aa26.87■■□□□ 1.89
COL9A3-207ENST00000467819 FAM155AB1AL88 458 aaPredicted RBP26.86■■□□□ 1.89
COL9A3-207ENST00000467819 CSF1RP07333 972 aa26.85■■□□□ 1.89
COL9A3-207ENST00000467819 DACT2Q5SW24 774 aa26.85■■□□□ 1.89
COL9A3-207ENST00000467819 COA1Q9GZY4 146 aa26.85■■□□□ 1.89
COL9A3-207ENST00000467819 SCAF8Q9UPN6 1271 aaKnown RBP26.85■■□□□ 1.89
COL9A3-207ENST00000467819 ZNF804BA4D1E1 1349 aa26.85■■□□□ 1.89
COL9A3-207ENST00000467819 PAPPA2Q9BXP8 1791 aa26.84■■□□□ 1.89
COL9A3-207ENST00000467819 F6X3S4 739 aa26.84■■□□□ 1.89
COL9A3-207ENST00000467819 KLRK1P26718 216 aa26.84■■□□□ 1.89
COL9A3-207ENST00000467819 CCDC102AQ96A19 550 aa26.84■■□□□ 1.89
COL9A3-207ENST00000467819 ANKRD2Q9GZV1 360 aa26.84■■□□□ 1.89
COL9A3-207ENST00000467819 SPINK5Q9NQ38 1064 aaPredicted RBP26.84■■□□□ 1.89
COL9A3-207ENST00000467819 PITPNM2Q9BZ72 1349 aa26.83■■□□□ 1.89
COL9A3-207ENST00000467819 KCNJ4P48050 445 aa26.82■■□□□ 1.88
COL9A3-207ENST00000467819 KIF23Q02241 960 aaPredicted RBP26.82■■□□□ 1.88
COL9A3-207ENST00000467819 NBPF9Q3BBW0 867 aa26.82■■□□□ 1.88
COL9A3-207ENST00000467819 STRIP1Q5VSL9 837 aa26.82■■□□□ 1.88
COL9A3-207ENST00000467819 ANKRD18BA2A2Z9 1011 aa26.81■■□□□ 1.88
COL9A3-207ENST00000467819 SLC10A3P09131 477 aa26.81■■□□□ 1.88
COL9A3-207ENST00000467819 CHRNDQ07001 517 aa26.81■■□□□ 1.88
COL9A3-207ENST00000467819 FAM9BQ8IZU0 186 aa26.81■■□□□ 1.88
COL9A3-207ENST00000467819 OGFOD1Q8N543 542 aa26.81■■□□□ 1.88
COL9A3-207ENST00000467819 CHMP3Q9Y3E7 222 aa26.81■■□□□ 1.88
COL9A3-207ENST00000467819 MYO3BQ8WXR4 1341 aa26.81■■□□□ 1.88
COL9A3-207ENST00000467819 CCDC85CA6NKD9 419 aa26.79■■□□□ 1.88
COL9A3-207ENST00000467819 BEND3Q5T5X7 828 aa26.79■■□□□ 1.88
COL9A3-207ENST00000467819 TTLL5Q6EMB2 1281 aa26.79■■□□□ 1.88
COL9A3-207ENST00000467819 FOXO4P98177 505 aa26.78■■□□□ 1.88
COL9A3-207ENST00000467819 PRAMEF18Q5VWM3 479 aa26.78■■□□□ 1.88
COL9A3-207ENST00000467819 SNAP23O00161 211 aa26.77■■□□□ 1.88
COL9A3-207ENST00000467819 WNT10BO00744 389 aa26.77■■□□□ 1.88
COL9A3-207ENST00000467819 SASH1O94885 1247 aa26.77■■□□□ 1.88
COL9A3-207ENST00000467819 GTF2IP78347 998 aa26.77■■□□□ 1.88
COL9A3-207ENST00000467819 IFIT5Q13325 482 aaKnown RBP26.77■■□□□ 1.88
COL9A3-207ENST00000467819 MOB2Q70IA6 237 aa26.77■■□□□ 1.88
COL9A3-207ENST00000467819 RASAL3Q86YV0 1011 aa26.77■■□□□ 1.88
COL9A3-207ENST00000467819 HELBQ8NG08 1087 aaPredicted RBP26.77■■□□□ 1.88
COL9A3-207ENST00000467819 MCOLN1Q9GZU1 580 aa26.77■■□□□ 1.88
COL9A3-207ENST00000467819 TAF5LO75529 589 aa26.76■■□□□ 1.87
COL9A3-207ENST00000467819 FKBP1BP68106 108 aa26.76■■□□□ 1.87
COL9A3-207ENST00000467819 KIAA0825Q8IV33 1275 aa26.76■■□□□ 1.87
COL9A3-207ENST00000467819 SAGE1Q9NXZ1 904 aa26.75■■□□□ 1.87
COL9A3-207ENST00000467819 ECM29Q5VYK3 1845 aa26.74■■□□□ 1.87
COL9A3-207ENST00000467819 TRPA1O75762 1119 aa26.74■■□□□ 1.87
COL9A3-207ENST00000467819 DGKZQ13574 1117 aa26.74■■□□□ 1.87
COL9A3-207ENST00000467819 LMBR1LQ6UX01 489 aa26.74■■□□□ 1.87
COL9A3-207ENST00000467819 CSRNP1Q96S65 589 aa26.74■■□□□ 1.87
COL9A3-207ENST00000467819 CD209Q9NNX6 404 aa26.74■■□□□ 1.87
COL9A3-207ENST00000467819 RNF186Q9NXI6 227 aa26.74■■□□□ 1.87
COL9A3-207ENST00000467819 HDAC9Q9UKV0 1011 aa26.74■■□□□ 1.87
COL9A3-207ENST00000467819 UBE2Q2LH0YL09 131 aa26.73■■□□□ 1.87
COL9A3-207ENST00000467819 GRM8O00222 908 aa26.73■■□□□ 1.87
COL9A3-207ENST00000467819 TTLL12Q14166 644 aaPredicted RBP26.73■■□□□ 1.87
COL9A3-207ENST00000467819 EPHA10Q5JZY3 1008 aa26.73■■□□□ 1.87
COL9A3-207ENST00000467819 IRS2Q9Y4H2 1338 aa26.72■■□□□ 1.87
COL9A3-207ENST00000467819 TAF7LQ5H9L4 462 aa26.72■■□□□ 1.87
COL9A3-207ENST00000467819 SLC4A10Q6U841 1118 aa26.72■■□□□ 1.87
COL9A3-207ENST00000467819 ZNF594Q96JF6 807 aaPredicted RBP26.72■■□□□ 1.87
COL9A3-207ENST00000467819 CCDC57Q2TAC2 916 aa26.71■■□□□ 1.87
COL9A3-207ENST00000467819 C9orf78Q9NZ63 289 aaPredicted RBP26.71■■□□□ 1.87
COL9A3-207ENST00000467819 PLIN1O60240 522 aa26.7■■□□□ 1.86
COL9A3-207ENST00000467819 NF2P35240 595 aa26.7■■□□□ 1.86
COL9A3-207ENST00000467819 MMP14P50281 582 aa26.7■■□□□ 1.86
COL9A3-207ENST00000467819 C15orf52Q6ZUT6 534 aaKnown RBP26.69■■□□□ 1.86
COL9A3-207ENST00000467819 ZNF804AQ7Z570 1209 aa26.69■■□□□ 1.86
COL9A3-207ENST00000467819 APOBEC3FQ8IUX4 373 aaKnown RBP26.69■■□□□ 1.86
COL9A3-207ENST00000467819 LDHAL6AQ6ZMR3 332 aa26.68■■□□□ 1.86
COL9A3-207ENST00000467819 CERS5Q8N5B7 392 aa26.68■■□□□ 1.86
COL9A3-207ENST00000467819 SRCIN1Q9C0H9 1055 aa26.68■■□□□ 1.86
COL9A3-207ENST00000467819 CNNM1Q9NRU3 951 aa26.68■■□□□ 1.86
COL9A3-207ENST00000467819 ALDH1L1O75891 902 aa26.67■■□□□ 1.86
COL9A3-207ENST00000467819 PRKG1Q13976 671 aa26.67■■□□□ 1.86
COL9A3-207ENST00000467819 ZBED3Q96IU2 234 aaPredicted RBP26.67■■□□□ 1.86
COL9A3-207ENST00000467819 DLGAP5Q15398 846 aa26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms