RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 C3orf67Q6ZVT6 689 aa21.86■■□□□ 1.09
COL9A3-205ENST00000466192 ZNF512BQ96KM6 892 aaPredicted RBP21.86■■□□□ 1.09
COL9A3-205ENST00000466192 LARP6Q9BRS8 491 aaKnown RBP21.86■■□□□ 1.09
COL9A3-205ENST00000466192 BCL11BQ9C0K0 894 aaPredicted RBP21.86■■□□□ 1.09
COL9A3-205ENST00000466192 VPS53Q5VIR6 699 aa21.85■■□□□ 1.09
COL9A3-205ENST00000466192 LPIN2Q92539 896 aa21.85■■□□□ 1.09
COL9A3-205ENST00000466192 HMG20BQ9P0W2 317 aa21.85■■□□□ 1.09
COL9A3-205ENST00000466192 ZDHHC9Q9Y397 364 aa21.85■■□□□ 1.09
COL9A3-205ENST00000466192 A0A1B0GUL6 1792 aa21.85■■□□□ 1.09
COL9A3-205ENST00000466192 ZPR1O75312 459 aa21.85■■□□□ 1.09
COL9A3-205ENST00000466192 ARHGEF1Q92888 912 aaKnown RBP21.85■■□□□ 1.09
COL9A3-205ENST00000466192 PDRG1Q9NUG6 133 aa21.85■■□□□ 1.09
COL9A3-205ENST00000466192 MAST3O60307 1309 aa21.85■■□□□ 1.09
COL9A3-205ENST00000466192 GOLGA6L22H0YM25 854 aa21.84■■□□□ 1.09
COL9A3-205ENST00000466192 SNAP23O00161 211 aa21.84■■□□□ 1.09
COL9A3-205ENST00000466192 IGHMBP2P38935 993 aaKnown RBP21.84■■□□□ 1.09
COL9A3-205ENST00000466192 PHKA1P46020 1223 aa21.84■■□□□ 1.09
COL9A3-205ENST00000466192 TSGA10IPQ3SY00 556 aa21.84■■□□□ 1.09
COL9A3-205ENST00000466192 CCDC102BQ68D86 513 aa21.84■■□□□ 1.09
COL9A3-205ENST00000466192 LIMCH1Q9UPQ0 1083 aa21.84■■□□□ 1.09
COL9A3-205ENST00000466192 U3KPZ7 1027 aaPredicted RBP21.84■■□□□ 1.09
COL9A3-205ENST00000466192 LAMA4Q16363 1823 aa21.83■■□□□ 1.09
COL9A3-205ENST00000466192 SF3B3Q15393 1217 aaKnown RBP21.83■■□□□ 1.09
COL9A3-205ENST00000466192 LRRC4BQ9NT99 713 aa21.83■■□□□ 1.09
COL9A3-205ENST00000466192 M0R2C6 588 aa21.82■■□□□ 1.08
COL9A3-205ENST00000466192 PSMA5P28066 241 aa21.82■■□□□ 1.08
COL9A3-205ENST00000466192 OSBP2Q969R2 916 aa21.82■■□□□ 1.08
COL9A3-205ENST00000466192 SETDB2Q96T68 719 aa21.82■■□□□ 1.08
COL9A3-205ENST00000466192 ARID4AP29374 1257 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-205ENST00000466192 SLC10A5Q5PT55 438 aa21.82■■□□□ 1.08
COL9A3-205ENST00000466192 FOXD4L5Q5VV16 416 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-205ENST00000466192 MCTP1Q6DN14 999 aa21.82■■□□□ 1.08
COL9A3-205ENST00000466192 FOXD4L4Q8WXT5 416 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-205ENST00000466192 SLC5A1P13866 664 aa21.81■■□□□ 1.08
COL9A3-205ENST00000466192 PTMSP20962 102 aa21.81■■□□□ 1.08
COL9A3-205ENST00000466192 LRRFIP1Q32MZ4 808 aaKnown RBP21.81■■□□□ 1.08
COL9A3-205ENST00000466192 ZFYP08048 801 aaPredicted RBP21.81■■□□□ 1.08
COL9A3-205ENST00000466192 CYP21A2P08686 494 aa21.81■■□□□ 1.08
COL9A3-205ENST00000466192 GTF2E1P29083 439 aaPredicted RBP21.81■■□□□ 1.08
COL9A3-205ENST00000466192 FAM196AQ6ZSG2 479 aa21.81■■□□□ 1.08
COL9A3-205ENST00000466192 CDC5LQ99459 802 aaKnown RBP21.81■■□□□ 1.08
COL9A3-205ENST00000466192 DSCC1Q9BVC3 393 aa21.81■■□□□ 1.08
COL9A3-205ENST00000466192 UBR3Q6ZT12 1888 aa21.8■■□□□ 1.08
COL9A3-205ENST00000466192 LARGE1O95461 756 aa21.8■■□□□ 1.08
COL9A3-205ENST00000466192 CHRNDQ07001 517 aa21.8■■□□□ 1.08
COL9A3-205ENST00000466192 BLOC1S2Q6QNY1 142 aa21.8■■□□□ 1.08
COL9A3-205ENST00000466192 NYXQ9GZU5 481 aa21.8■■□□□ 1.08
COL9A3-205ENST00000466192 PHF14O94880 888 aa21.8■■□□□ 1.08
COL9A3-205ENST00000466192 UQCRFS1P1P0C7P4 283 aa21.8■■□□□ 1.08
COL9A3-205ENST00000466192 HSPD1P10809 573 aaKnown RBP21.8■■□□□ 1.08
COL9A3-205ENST00000466192 RPS6KB1P23443 525 aa21.79■■□□□ 1.08
COL9A3-205ENST00000466192 SKOR2Q2VWA4 1001 aaPredicted RBP21.79■■□□□ 1.08
COL9A3-205ENST00000466192 NBPF5PQ86XG9 351 aaPredicted RBP21.79■■□□□ 1.08
COL9A3-205ENST00000466192 DOCK2Q92608 1830 aa21.78■■□□□ 1.08
COL9A3-205ENST00000466192 KRT32Q14532 448 aa21.78■■□□□ 1.08
COL9A3-205ENST00000466192 WASHC4Q2M389 1173 aa21.78■■□□□ 1.08
COL9A3-205ENST00000466192 TRAPPC3LQ5T215 181 aa21.78■■□□□ 1.08
COL9A3-205ENST00000466192 KRT27Q7Z3Y8 459 aa21.78■■□□□ 1.08
COL9A3-205ENST00000466192 TCEANC2Q96MN5 208 aa21.78■■□□□ 1.08
COL9A3-205ENST00000466192 PIH1D3Q9NQM4 214 aaKnown RBP21.78■■□□□ 1.08
COL9A3-205ENST00000466192 RFC4P35249 363 aa21.78■■□□□ 1.08
COL9A3-205ENST00000466192 ANKRD18AQ8IVF6 992 aa21.78■■□□□ 1.08
COL9A3-205ENST00000466192 TTF1Q15361 905 aaPredicted RBP21.77■■□□□ 1.08
COL9A3-205ENST00000466192 APPBP2Q92624 585 aa21.77■■□□□ 1.08
COL9A3-205ENST00000466192 CHAMP1Q96JM3 812 aa21.77■■□□□ 1.08
COL9A3-205ENST00000466192 BRD1O95696 1058 aa21.77■■□□□ 1.07
COL9A3-205ENST00000466192 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.77■■□□□ 1.07
COL9A3-205ENST00000466192 PUS7LQ9H0K6 701 aaKnown RBP21.77■■□□□ 1.07
COL9A3-205ENST00000466192 CCDC24Q8N4L8 307 aa21.76■■□□□ 1.07
COL9A3-205ENST00000466192 NEK1Q96PY6 1258 aa21.76■■□□□ 1.07
COL9A3-205ENST00000466192 ALDH8A1Q9H2A2 487 aaPredicted RBP21.76■■□□□ 1.07
COL9A3-205ENST00000466192 A0A0G2JLW4 131 aa21.75■■□□□ 1.07
COL9A3-205ENST00000466192 FOXP2O15409 715 aa21.75■■□□□ 1.07
COL9A3-205ENST00000466192 ADD2P35612 726 aa21.75■■□□□ 1.07
COL9A3-205ENST00000466192 RASGRF1Q13972 1273 aa21.75■■□□□ 1.07
COL9A3-205ENST00000466192 ME3Q16798 604 aa21.75■■□□□ 1.07
COL9A3-205ENST00000466192 TPTE2Q6XPS3 522 aa21.75■■□□□ 1.07
COL9A3-205ENST00000466192 STOX1Q6ZVD7 989 aa21.75■■□□□ 1.07
COL9A3-205ENST00000466192 SPATA5Q8NB90 893 aa21.75■■□□□ 1.07
COL9A3-205ENST00000466192 CELF1Q92879 486 aaKnown RBP21.75■■□□□ 1.07
COL9A3-205ENST00000466192 ZSCAN31Q96LW9 406 aaPredicted RBP21.75■■□□□ 1.07
COL9A3-205ENST00000466192 TPCN1Q9ULQ1 816 aa21.75■■□□□ 1.07
COL9A3-205ENST00000466192 TRIM37O94972 964 aa21.75■■□□□ 1.07
COL9A3-205ENST00000466192 SH2B1Q9NRF2 756 aaPredicted RBP21.75■■□□□ 1.07
COL9A3-205ENST00000466192 BSDC1Q9NW68 430 aaPredicted RBP21.75■■□□□ 1.07
COL9A3-205ENST00000466192 TNRC6CQ9HCJ0 1690 aaKnown RBP21.74■■□□□ 1.07
COL9A3-205ENST00000466192 BCAMP50895 628 aa21.74■■□□□ 1.07
COL9A3-205ENST00000466192 TOB2Q14106 344 aaPredicted RBP21.74■■□□□ 1.07
COL9A3-205ENST00000466192 SLC9C2Q5TAH2 1124 aa21.74■■□□□ 1.07
COL9A3-205ENST00000466192 NLRP3Q96P20 1036 aa21.74■■□□□ 1.07
COL9A3-205ENST00000466192 DDX49Q9Y6V7 483 aaKnown RBP21.74■■□□□ 1.07
COL9A3-205ENST00000466192 IDH1O75874 414 aaKnown RBP21.74■■□□□ 1.07
COL9A3-205ENST00000466192 ST3GAL1Q11201 340 aa21.74■■□□□ 1.07
COL9A3-205ENST00000466192 ZSCAN25Q6NSZ9 544 aa21.74■■□□□ 1.07
COL9A3-205ENST00000466192 CCDC83Q8IWF9 413 aa21.74■■□□□ 1.07
COL9A3-205ENST00000466192 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.74■■□□□ 1.07
COL9A3-205ENST00000466192 LMBRD1Q9NUN5 540 aa21.73■■□□□ 1.07
COL9A3-205ENST00000466192 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.72■■□□□ 1.07
COL9A3-205ENST00000466192 WTIPA6NIX2 430 aaPredicted RBP21.72■■□□□ 1.07
COL9A3-205ENST00000466192 TTLL5Q6EMB2 1281 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms