RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 KCNJ4P48050 445 aa16.34■□□□□ 0.21
COL28A1-206ENST00000465339 CHADLQ6NUI6 762 aa16.34■□□□□ 0.21
COL28A1-206ENST00000465339 LDHDQ86WU2 507 aa16.34■□□□□ 0.21
COL28A1-206ENST00000465339 GPRC5DQ9NZD1 345 aa16.34■□□□□ 0.21
COL28A1-206ENST00000465339 WTIPA6NIX2 430 aaPredicted RBP16.33■□□□□ 0.2
COL28A1-206ENST00000465339 GNAI3P08754 354 aa16.33■□□□□ 0.2
COL28A1-206ENST00000465339 EPS15P42566 896 aa16.33■□□□□ 0.2
COL28A1-206ENST00000465339 GMPSP49915 693 aaPredicted RBP16.33■□□□□ 0.2
COL28A1-206ENST00000465339 EAPPQ56P03 285 aaPredicted RBP16.33■□□□□ 0.2
COL28A1-206ENST00000465339 DPF2Q92785 391 aa16.33■□□□□ 0.2
COL28A1-206ENST00000465339 A0A1B0GUL6 1792 aa16.33■□□□□ 0.2
COL28A1-206ENST00000465339 PSME4Q14997 1843 aa16.33■□□□□ 0.2
COL28A1-206ENST00000465339 PSMD14O00487 310 aa16.32■□□□□ 0.2
COL28A1-206ENST00000465339 TAF5LO75529 589 aa16.32■□□□□ 0.2
COL28A1-206ENST00000465339 PRKAR2AP13861 404 aaKnown RBP16.32■□□□□ 0.2
COL28A1-206ENST00000465339 RPS12P25398 132 aaKnown RBP16.32■□□□□ 0.2
COL28A1-206ENST00000465339 SCN9AQ15858 1988 aa16.32■□□□□ 0.2
COL28A1-206ENST00000465339 C15orf52Q6ZUT6 534 aaKnown RBP16.32■□□□□ 0.2
COL28A1-206ENST00000465339 USP50Q70EL3 339 aaPredicted RBP16.32■□□□□ 0.2
COL28A1-206ENST00000465339 HELBQ8NG08 1087 aaPredicted RBP16.32■□□□□ 0.2
COL28A1-206ENST00000465339 COA1Q9GZY4 146 aa16.32■□□□□ 0.2
COL28A1-206ENST00000465339 KCNQ5Q9NR82 932 aa16.32■□□□□ 0.2
COL28A1-206ENST00000465339 ADARB2Q9NS39 739 aaKnown RBP16.32■□□□□ 0.2
COL28A1-206ENST00000465339 MROH5Q6ZUA9 1318 aa16.31■□□□□ 0.2
COL28A1-206ENST00000465339 VIL1P09327 827 aaKnown RBP16.31■□□□□ 0.2
COL28A1-206ENST00000465339 POTEIP0CG38 1075 aa16.31■□□□□ 0.2
COL28A1-206ENST00000465339 POTEJP0CG39 1038 aa16.31■□□□□ 0.2
COL28A1-206ENST00000465339 APLP1P51693 650 aa16.31■□□□□ 0.2
COL28A1-206ENST00000465339 CLUAP1Q96AJ1 413 aa16.31■□□□□ 0.2
COL28A1-206ENST00000465339 RIPOR2Q9Y4F9 1068 aa16.31■□□□□ 0.2
COL28A1-206ENST00000465339 H7C1D1 291 aa16.3■□□□□ 0.2
COL28A1-206ENST00000465339 PLIN1O60240 522 aa16.3■□□□□ 0.2
COL28A1-206ENST00000465339 TXNRD3Q86VQ6 643 aa16.3■□□□□ 0.2
COL28A1-206ENST00000465339 MEIS3Q99687 375 aa16.3■□□□□ 0.2
COL28A1-206ENST00000465339 PUS3Q9BZE2 481 aaKnown RBP16.3■□□□□ 0.2
COL28A1-206ENST00000465339 CNOT7Q9UIV1 285 aaKnown RBP16.3■□□□□ 0.2
COL28A1-206ENST00000465339 LRRFIP2Q9Y608 721 aaKnown RBP16.3■□□□□ 0.2
COL28A1-206ENST00000465339 ADAMTSL1Q8N6G6 1762 aa16.3■□□□□ 0.2
COL28A1-206ENST00000465339 USP17L3A6NCW0 530 aa16.29■□□□□ 0.2
COL28A1-206ENST00000465339 USP17L4A6NCW7 530 aa16.29■□□□□ 0.2
COL28A1-206ENST00000465339 UBE4AQ14139 1066 aa16.29■□□□□ 0.2
COL28A1-206ENST00000465339 USP17L1Q7RTZ2 530 aa16.29■□□□□ 0.2
COL28A1-206ENST00000465339 FBXO3Q9UK99 471 aa16.29■□□□□ 0.2
COL28A1-206ENST00000465339 TNNQ9UQP3 1299 aa16.29■□□□□ 0.2
COL28A1-206ENST00000465339 RFX5P48382 616 aaPredicted RBP16.28■□□□□ 0.2
COL28A1-206ENST00000465339 RSBN1LQ6PCB5 846 aaPredicted RBP16.28■□□□□ 0.2
COL28A1-206ENST00000465339 FTSJ3Q8IY81 847 aaKnown RBP16.28■□□□□ 0.2
COL28A1-206ENST00000465339 DZIP1LQ8IYY4 767 aaKnown RBP16.28■□□□□ 0.2
COL28A1-206ENST00000465339 TMEM57Q8N5G2 664 aa16.28■□□□□ 0.2
COL28A1-206ENST00000465339 AGBL3Q8NEM8 1001 aa16.28■□□□□ 0.2
COL28A1-206ENST00000465339 IRS2Q9Y4H2 1338 aa16.27■□□□□ 0.2
COL28A1-206ENST00000465339 SNAP23O00161 211 aa16.27■□□□□ 0.2
COL28A1-206ENST00000465339 MS4A1P11836 297 aa16.27■□□□□ 0.2
COL28A1-206ENST00000465339 PTPN12Q05209 780 aaKnown RBP16.27■□□□□ 0.2
COL28A1-206ENST00000465339 LRRC24Q50LG9 513 aa16.27■□□□□ 0.2
COL28A1-206ENST00000465339 STRIP1Q5VSL9 837 aa16.27■□□□□ 0.2
COL28A1-206ENST00000465339 ZNF804AQ7Z570 1209 aa16.27■□□□□ 0.2
COL28A1-206ENST00000465339 MICALL2Q8IY33 904 aa16.27■□□□□ 0.2
COL28A1-206ENST00000465339 CD209Q9NNX6 404 aa16.27■□□□□ 0.2
COL28A1-206ENST00000465339 ZNF609O15014 1411 aa16.27■□□□□ 0.19
COL28A1-206ENST00000465339 EYA2O00167 538 aa16.26■□□□□ 0.19
COL28A1-206ENST00000465339 PDE8BO95263 885 aa16.26■□□□□ 0.19
COL28A1-206ENST00000465339 GNAI2P04899 355 aa16.26■□□□□ 0.19
COL28A1-206ENST00000465339 KLRK1P26718 216 aa16.26■□□□□ 0.19
COL28A1-206ENST00000465339 METTL24Q5JXM2 366 aa16.26■□□□□ 0.19
COL28A1-206ENST00000465339 CNTROBQ8N137 903 aa16.26■□□□□ 0.19
COL28A1-206ENST00000465339 KLHDC4Q8TBB5 520 aa16.26■□□□□ 0.19
COL28A1-206ENST00000465339 ZC3H15Q8WU90 426 aaKnown RBP16.26■□□□□ 0.19
COL28A1-206ENST00000465339 RCAN3Q9UKA8 241 aa16.26■□□□□ 0.19
COL28A1-206ENST00000465339 MYO3BQ8WXR4 1341 aa16.25■□□□□ 0.19
COL28A1-206ENST00000465339 CIAO1O76071 339 aa16.25■□□□□ 0.19
COL28A1-206ENST00000465339 ITGBL1O95965 494 aaPredicted RBP16.25■□□□□ 0.19
COL28A1-206ENST00000465339 IL1R1P14778 569 aa16.25■□□□□ 0.19
COL28A1-206ENST00000465339 MMP14P50281 582 aa16.25■□□□□ 0.19
COL28A1-206ENST00000465339 MTX1Q13505 466 aa16.25■□□□□ 0.19
COL28A1-206ENST00000465339 TTLL5Q6EMB2 1281 aa16.25■□□□□ 0.19
COL28A1-206ENST00000465339 PGAP2Q9UHJ9 254 aa16.25■□□□□ 0.19
COL28A1-206ENST00000465339 DACT2Q5SW24 774 aa16.24■□□□□ 0.19
COL28A1-206ENST00000465339 MAP1SQ66K74 1059 aaPredicted RBP16.24■□□□□ 0.19
COL28A1-206ENST00000465339 GMLQ99445 158 aa16.24■□□□□ 0.19
COL28A1-206ENST00000465339 ZNF646O15015 1829 aaPredicted RBP16.24■□□□□ 0.19
COL28A1-206ENST00000465339 PASKQ96RG2 1323 aa16.23■□□□□ 0.19
COL28A1-206ENST00000465339 SHTN1A0MZ66 631 aa16.23■□□□□ 0.19
COL28A1-206ENST00000465339 USP17L8P0C7I0 530 aa16.23■□□□□ 0.19
COL28A1-206ENST00000465339 HIBADHP31937 336 aaKnown RBP16.23■□□□□ 0.19
COL28A1-206ENST00000465339 HIRAP54198 1017 aaPredicted RBP16.23■□□□□ 0.19
COL28A1-206ENST00000465339 ZNF280AP59817 542 aaPredicted RBP16.23■□□□□ 0.19
COL28A1-206ENST00000465339 GTF2IP78347 998 aa16.23■□□□□ 0.19
COL28A1-206ENST00000465339 PLCB2Q00722 1185 aa16.23■□□□□ 0.19
COL28A1-206ENST00000465339 SAMD7Q7Z3H4 446 aa16.23■□□□□ 0.19
COL28A1-206ENST00000465339 ITPRIPQ8IWB1 547 aa16.23■□□□□ 0.19
COL28A1-206ENST00000465339 VGLL2Q8N8G2 317 aa16.23■□□□□ 0.19
COL28A1-206ENST00000465339 COPRSQ9NQ92 184 aa16.23■□□□□ 0.19
COL28A1-206ENST00000465339 ZBTB7BO15156 539 aaPredicted RBP16.22■□□□□ 0.19
COL28A1-206ENST00000465339 SRGAP3O43295 1099 aa16.22■□□□□ 0.19
COL28A1-206ENST00000465339 SASH1O94885 1247 aa16.22■□□□□ 0.19
COL28A1-206ENST00000465339 RLBP1P12271 317 aa16.22■□□□□ 0.19
COL28A1-206ENST00000465339 IL15P40933 162 aaPredicted RBP16.22■□□□□ 0.19
COL28A1-206ENST00000465339 TBC1D10BQ4KMP7 808 aaPredicted RBP16.22■□□□□ 0.19
COL28A1-206ENST00000465339 CAVIN4Q5BKX8 364 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms