RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 GPC2Q8N158 579 aa24.5■■□□□ 1.51
COL9A3-204ENST00000463487 VGLL2Q8N8G2 317 aa24.5■■□□□ 1.51
COL9A3-204ENST00000463487 AKAP2Q9Y2D5 859 aa24.5■■□□□ 1.51
COL9A3-204ENST00000463487 COL4A5P29400 1685 aa24.5■■□□□ 1.51
COL9A3-204ENST00000463487 CENPBP07199 599 aaPredicted RBP24.49■■□□□ 1.51
COL9A3-204ENST00000463487 CAVIN4Q5BKX8 364 aa24.49■■□□□ 1.51
COL9A3-204ENST00000463487 CIAPIN1Q6FI81 312 aa24.49■■□□□ 1.51
COL9A3-204ENST00000463487 ZNF526Q8TF50 670 aaPredicted RBP24.49■■□□□ 1.51
COL9A3-204ENST00000463487 LPIN2Q92539 896 aa24.49■■□□□ 1.51
COL9A3-204ENST00000463487 VPS37DQ86XT2 251 aa24.48■■□□□ 1.51
COL9A3-204ENST00000463487 ERC1Q8IUD2 1116 aa24.48■■□□□ 1.51
COL9A3-204ENST00000463487 ZNF784Q8NCA9 323 aaPredicted RBP24.48■■□□□ 1.51
COL9A3-204ENST00000463487 ZNF541Q9H0D2 1346 aa24.48■■□□□ 1.51
COL9A3-204ENST00000463487 ATP2B3Q16720 1220 aa24.47■■□□□ 1.51
COL9A3-204ENST00000463487 NOP58Q9Y2X3 529 aaKnown RBP24.47■■□□□ 1.51
COL9A3-204ENST00000463487 GJA3Q9Y6H8 435 aa24.47■■□□□ 1.51
COL9A3-204ENST00000463487 WTIPA6NIX2 430 aaPredicted RBP24.46■■□□□ 1.51
COL9A3-204ENST00000463487 SNAP23O00161 211 aa24.46■■□□□ 1.51
COL9A3-204ENST00000463487 IQCA1LA6NCM1 817 aa24.45■■□□□ 1.5
COL9A3-204ENST00000463487 RAD17O75943 681 aa24.45■■□□□ 1.5
COL9A3-204ENST00000463487 DDNO94850 711 aaPredicted RBP24.45■■□□□ 1.5
COL9A3-204ENST00000463487 HIBADHP31937 336 aaKnown RBP24.45■■□□□ 1.5
COL9A3-204ENST00000463487 CXCL9Q07325 125 aa24.45■■□□□ 1.5
COL9A3-204ENST00000463487 YDJCA8MPS7 323 aa24.44■■□□□ 1.5
COL9A3-204ENST00000463487 FGFR2P21802 821 aa24.44■■□□□ 1.5
COL9A3-204ENST00000463487 KLRK1P26718 216 aa24.44■■□□□ 1.5
COL9A3-204ENST00000463487 TFCP2Q12800 502 aa24.44■■□□□ 1.5
COL9A3-204ENST00000463487 TXNRD3Q86VQ6 643 aa24.44■■□□□ 1.5
COL9A3-204ENST00000463487 IRS2Q9Y4H2 1338 aa24.43■■□□□ 1.5
COL9A3-204ENST00000463487 LMOD1P29536 600 aaPredicted RBP24.43■■□□□ 1.5
COL9A3-204ENST00000463487 L3MBTL3Q96JM7 780 aaPredicted RBP24.43■■□□□ 1.5
COL9A3-204ENST00000463487 CD209Q9NNX6 404 aa24.43■■□□□ 1.5
COL9A3-204ENST00000463487 USP17L3A6NCW0 530 aa24.42■■□□□ 1.5
COL9A3-204ENST00000463487 USP17L4A6NCW7 530 aa24.42■■□□□ 1.5
COL9A3-204ENST00000463487 USP17L1Q7RTZ2 530 aa24.42■■□□□ 1.5
COL9A3-204ENST00000463487 WDR90Q96KV7 1748 aa24.41■■□□□ 1.5
COL9A3-204ENST00000463487 RAB11FIP3O75154 756 aa24.41■■□□□ 1.5
COL9A3-204ENST00000463487 FRAT2O75474 233 aaPredicted RBP24.41■■□□□ 1.5
COL9A3-204ENST00000463487 VEGFAP15692 232 aaPredicted RBP24.41■■□□□ 1.5
COL9A3-204ENST00000463487 RPS12P25398 132 aaKnown RBP24.41■■□□□ 1.5
COL9A3-204ENST00000463487 GYG1P46976 350 aa24.41■■□□□ 1.5
COL9A3-204ENST00000463487 SIRT2Q8IXJ6 389 aa24.41■■□□□ 1.5
COL9A3-204ENST00000463487 FBXW7Q969H0 707 aa24.41■■□□□ 1.5
COL9A3-204ENST00000463487 FAM84BQ96KN1 310 aaPredicted RBP24.41■■□□□ 1.5
COL9A3-204ENST00000463487 GPR108Q9NPR9 543 aa24.41■■□□□ 1.5
COL9A3-204ENST00000463487 GNL3LQ9NVN8 582 aaKnown RBP24.41■■□□□ 1.5
COL9A3-204ENST00000463487 EXOC6BQ9Y2D4 811 aa24.41■■□□□ 1.5
COL9A3-204ENST00000463487 PSMD14O00487 310 aa24.4■■□□□ 1.5
COL9A3-204ENST00000463487 IL1R1P14778 569 aa24.4■■□□□ 1.5
COL9A3-204ENST00000463487 STRIP1Q5VSL9 837 aa24.4■■□□□ 1.5
COL9A3-204ENST00000463487 C16orf71Q8IYS4 520 aaPredicted RBP24.4■■□□□ 1.5
COL9A3-204ENST00000463487 MYO3BQ8WXR4 1341 aa24.39■■□□□ 1.5
COL9A3-204ENST00000463487 A0A1B0GUL7 405 aa24.39■■□□□ 1.49
COL9A3-204ENST00000463487 SASH1O94885 1247 aa24.39■■□□□ 1.49
COL9A3-204ENST00000463487 VIL1P09327 827 aaKnown RBP24.39■■□□□ 1.49
COL9A3-204ENST00000463487 GORABQ5T7V8 394 aa24.39■■□□□ 1.49
COL9A3-204ENST00000463487 HACL1Q9UJ83 578 aa24.39■■□□□ 1.49
COL9A3-204ENST00000463487 TTLL5Q6EMB2 1281 aa24.38■■□□□ 1.49
COL9A3-204ENST00000463487 FBXO33Q7Z6M2 555 aa24.38■■□□□ 1.49
COL9A3-204ENST00000463487 KIF1BPQ96EK5 621 aa24.38■■□□□ 1.49
COL9A3-204ENST00000463487 NEUROD6Q96NK8 337 aa24.38■■□□□ 1.49
COL9A3-204ENST00000463487 RRAGCQ9HB90 399 aa24.38■■□□□ 1.49
COL9A3-204ENST00000463487 NMRK2Q9NPI5 230 aa24.38■■□□□ 1.49
COL9A3-204ENST00000463487 ZNF609O15014 1411 aa24.37■■□□□ 1.49
COL9A3-204ENST00000463487 RSBN1LQ6PCB5 846 aaPredicted RBP24.37■■□□□ 1.49
COL9A3-204ENST00000463487 EXOC6Q8TAG9 804 aa24.37■■□□□ 1.49
COL9A3-204ENST00000463487 DPF2Q92785 391 aa24.37■■□□□ 1.49
COL9A3-204ENST00000463487 SCN4AP35499 1836 aa24.37■■□□□ 1.49
COL9A3-204ENST00000463487 PSME4Q14997 1843 aa24.37■■□□□ 1.49
COL9A3-204ENST00000463487 ARAP2Q8WZ64 1704 aa24.36■■□□□ 1.49
COL9A3-204ENST00000463487 GMPSP49915 693 aaPredicted RBP24.36■■□□□ 1.49
COL9A3-204ENST00000463487 TIMM10P62072 90 aa24.36■■□□□ 1.49
COL9A3-204ENST00000463487 GTF2IP78347 998 aa24.36■■□□□ 1.49
COL9A3-204ENST00000463487 TNNI3KQ59H18 835 aa24.36■■□□□ 1.49
COL9A3-204ENST00000463487 AGBL3Q8NEM8 1001 aa24.36■■□□□ 1.49
COL9A3-204ENST00000463487 TDRD7Q8NHU6 1098 aaKnown RBP24.36■■□□□ 1.49
COL9A3-204ENST00000463487 KCNQ5Q9NR82 932 aa24.36■■□□□ 1.49
COL9A3-204ENST00000463487 PCDHB15Q9Y5E8 787 aa24.36■■□□□ 1.49
COL9A3-204ENST00000463487 FPGT-TNNI3KV9GXZ4 949 aa24.36■■□□□ 1.49
COL9A3-204ENST00000463487 SCN9AQ15858 1988 aa24.36■■□□□ 1.49
COL9A3-204ENST00000463487 BCAMP50895 628 aa24.35■■□□□ 1.49
COL9A3-204ENST00000463487 CLASRPQ8N2M8 674 aaKnown RBP24.35■■□□□ 1.49
COL9A3-204ENST00000463487 RHPN1Q8TCX5 695 aa24.35■■□□□ 1.49
COL9A3-204ENST00000463487 XAGE2Q96GT9 111 aa24.35■■□□□ 1.49
COL9A3-204ENST00000463487 GPRC5DQ9NZD1 345 aa24.35■■□□□ 1.49
COL9A3-204ENST00000463487 H7C1D1 291 aa24.34■■□□□ 1.49
COL9A3-204ENST00000463487 SEMA3EO15041 775 aa24.34■■□□□ 1.49
COL9A3-204ENST00000463487 APBB1O00213 710 aa24.33■■□□□ 1.49
COL9A3-204ENST00000463487 EPHX2P34913 555 aa24.33■■□□□ 1.49
COL9A3-204ENST00000463487 MMP14P50281 582 aa24.33■■□□□ 1.49
COL9A3-204ENST00000463487 SCNN1DP51172 638 aa24.33■■□□□ 1.49
COL9A3-204ENST00000463487 FKBP1AP62942 108 aaKnown RBP24.33■■□□□ 1.49
COL9A3-204ENST00000463487 DACT2Q5SW24 774 aa24.33■■□□□ 1.49
COL9A3-204ENST00000463487 PNMA8AQ86V59 439 aaPredicted RBP24.33■■□□□ 1.49
COL9A3-204ENST00000463487 OGFOD1Q8N543 542 aa24.33■■□□□ 1.49
COL9A3-204ENST00000463487 TBC1D22AQ8WUA7 517 aa24.33■■□□□ 1.49
COL9A3-204ENST00000463487 ZBTB12Q9Y330 459 aaPredicted RBP24.33■■□□□ 1.49
COL9A3-204ENST00000463487 IRX6P78412 446 aaPredicted RBP24.32■■□□□ 1.48
COL9A3-204ENST00000463487 CCDC158Q5M9N0 1113 aa24.32■■□□□ 1.48
COL9A3-204ENST00000463487 CCDC102BQ68D86 513 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms