RNA–Protein interactions for RNA: ENST00000463209.1

TMEM254-208, Transcript of transmembrane protein 254, human

TSL 3

Gene TMEM254, Length 407 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM254-208	ENST00000463209	CEP350	Q5VT06	3117 aa		10.84	□□□□□ -0.67
TMEM254-208	ENST00000463209	TRAF5	O00463	557 aa		10.84	□□□□□ -0.67
TMEM254-208	ENST00000463209	TRIM27	P14373	513 aa		10.84	□□□□□ -0.67
TMEM254-208	ENST00000463209	HIRA	P54198	1017 aa	Predicted RBP	10.84	□□□□□ -0.67
TMEM254-208	ENST00000463209	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	10.84	□□□□□ -0.67
TMEM254-208	ENST00000463209	LRRC24	Q50LG9	513 aa		10.84	□□□□□ -0.67
TMEM254-208	ENST00000463209	LDHAL6A	Q6ZMR3	332 aa		10.84	□□□□□ -0.67
TMEM254-208	ENST00000463209	ANKRD2	Q9GZV1	360 aa		10.84	□□□□□ -0.67
TMEM254-208	ENST00000463209	CNOT7	Q9UIV1	285 aa	Known RBP	10.84	□□□□□ -0.67
TMEM254-208	ENST00000463209	LRRFIP2	Q9Y608	721 aa	Known RBP	10.84	□□□□□ -0.67
TMEM254-208	ENST00000463209	IRS2	Q9Y4H2	1338 aa		10.84	□□□□□ -0.67
TMEM254-208	ENST00000463209	ITGBL1	O95965	494 aa	Predicted RBP	10.83	□□□□□ -0.68
TMEM254-208	ENST00000463209	UBTFL1	P0CB47	393 aa	Predicted RBP	10.83	□□□□□ -0.68
TMEM254-208	ENST00000463209	RABL6	Q3YEC7	729 aa	Predicted RBP	10.83	□□□□□ -0.68
TMEM254-208	ENST00000463209	PNMA8A	Q86V59	439 aa	Predicted RBP	10.83	□□□□□ -0.68
TMEM254-208	ENST00000463209	CNTROB	Q8N137	903 aa		10.83	□□□□□ -0.68
TMEM254-208	ENST00000463209	ADARB2	Q9NS39	739 aa	Known RBP	10.83	□□□□□ -0.68
TMEM254-208	ENST00000463209	PASK	Q96RG2	1323 aa		10.83	□□□□□ -0.68
TMEM254-208	ENST00000463209	BRPF1	P55201	1214 aa	Predicted RBP	10.82	□□□□□ -0.68
TMEM254-208	ENST00000463209	ATF7IP	Q6VMQ6	1270 aa		10.82	□□□□□ -0.68
TMEM254-208	ENST00000463209	GLIS2	Q9BZE0	524 aa	Predicted RBP	10.82	□□□□□ -0.68
TMEM254-208	ENST00000463209	SIL1	Q9H173	461 aa		10.82	□□□□□ -0.68
TMEM254-208	ENST00000463209	SCAF8	Q9UPN6	1271 aa	Known RBP	10.82	□□□□□ -0.68
TMEM254-208	ENST00000463209	LEMD3	Q9Y2U8	911 aa		10.82	□□□□□ -0.68
TMEM254-208	ENST00000463209	USP17L3	A6NCW0	530 aa		10.81	□□□□□ -0.68
TMEM254-208	ENST00000463209	USP17L4	A6NCW7	530 aa		10.81	□□□□□ -0.68
TMEM254-208	ENST00000463209	VIL1	P09327	827 aa	Known RBP	10.81	□□□□□ -0.68
TMEM254-208	ENST00000463209	RLBP1	P12271	317 aa		10.81	□□□□□ -0.68
TMEM254-208	ENST00000463209	GYG1	P46976	350 aa		10.81	□□□□□ -0.68
TMEM254-208	ENST00000463209	RFX5	P48382	616 aa	Predicted RBP	10.81	□□□□□ -0.68
TMEM254-208	ENST00000463209	RSBN1L	Q6PCB5	846 aa	Predicted RBP	10.81	□□□□□ -0.68
TMEM254-208	ENST00000463209	USP50	Q70EL3	339 aa	Predicted RBP	10.81	□□□□□ -0.68
TMEM254-208	ENST00000463209	USP17L1	Q7RTZ2	530 aa		10.81	□□□□□ -0.68
TMEM254-208	ENST00000463209	TMEM57	Q8N5G2	664 aa		10.81	□□□□□ -0.68
TMEM254-208	ENST00000463209	DNAJC5G	Q8N7S2	189 aa		10.81	□□□□□ -0.68
TMEM254-208	ENST00000463209	MKRN1	Q9UHC7	482 aa	Known RBP	10.81	□□□□□ -0.68
TMEM254-208	ENST00000463209	ADM5	C9JUS6	153 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209		H7C1D1	291 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	GTF2I	P78347	998 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	KIF4B	Q2VIQ3	1234 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	METTL24	Q5JXM2	366 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	DACT2	Q5SW24	774 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	ZKSCAN2	Q63HK3	967 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	INTS3	Q68E01	1043 aa	Known RBP	10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	ARHGAP45	Q92619	1136 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	YTHDC1	Q96MU7	727 aa	Known RBP	10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	COA1	Q9GZY4	146 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	C1orf115	Q9H7X2	142 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	ZNF408	Q9H9D4	720 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	CD209	Q9NNX6	404 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	PA2G4	Q9UQ80	394 aa	Known RBP	10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	RIPOR2	Q9Y4F9	1068 aa		10.8	□□□□□ -0.68
TMEM254-208	ENST00000463209	IPO8	O15397	1037 aa	Known RBP	10.79	□□□□□ -0.68
TMEM254-208	ENST00000463209	RPS12	P25398	132 aa	Known RBP	10.79	□□□□□ -0.68
TMEM254-208	ENST00000463209	PODN	Q7Z5L7	613 aa		10.79	□□□□□ -0.68
TMEM254-208	ENST00000463209	CERS5	Q8N5B7	392 aa		10.79	□□□□□ -0.68
TMEM254-208	ENST00000463209	DPF2	Q92785	391 aa		10.79	□□□□□ -0.68
TMEM254-208	ENST00000463209	GML	Q99445	158 aa		10.79	□□□□□ -0.68
TMEM254-208	ENST00000463209	MROH5	Q6ZUA9	1318 aa		10.79	□□□□□ -0.68
TMEM254-208	ENST00000463209	TRPM7	Q96QT4	1865 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	ARAP2	Q8WZ64	1704 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209		F8W031	263 aa	Predicted RBP	10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	ZBTB22	O15209	634 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	SASH1	O94885	1247 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	USP17L8	P0C7I0	530 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	PTPN12	Q05209	780 aa	Known RBP	10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	ATG9A	Q7Z3C6	839 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	ZNF804A	Q7Z570	1209 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	USP48	Q86UV5	1035 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	KIAA0825	Q8IV33	1275 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	VGLL2	Q8N8G2	317 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	PANK1	Q8TE04	598 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	KLRG1	Q96E93	195 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	GGA3	Q9NZ52	723 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	PCDHAC2	Q9Y5I4	1007 aa		10.78	□□□□□ -0.68
TMEM254-208	ENST00000463209	POLR2A	P24928	1970 aa	Known RBP	10.77	□□□□□ -0.68
TMEM254-208	ENST00000463209	ZNF609	O15014	1411 aa		10.77	□□□□□ -0.68
TMEM254-208	ENST00000463209	TMEM88B	A6NKF7	163 aa		10.77	□□□□□ -0.69
TMEM254-208	ENST00000463209	EYA2	O00167	538 aa		10.77	□□□□□ -0.69
TMEM254-208	ENST00000463209	GRM1	Q13255	1194 aa		10.77	□□□□□ -0.69
TMEM254-208	ENST00000463209	STRIP1	Q5VSL9	837 aa		10.77	□□□□□ -0.69
TMEM254-208	ENST00000463209	TTLL5	Q6EMB2	1281 aa		10.77	□□□□□ -0.69
TMEM254-208	ENST00000463209	ITPRIP	Q8IWB1	547 aa		10.77	□□□□□ -0.69
TMEM254-208	ENST00000463209	FTSJ3	Q8IY81	847 aa	Known RBP	10.77	□□□□□ -0.69
TMEM254-208	ENST00000463209	AGBL3	Q8NEM8	1001 aa		10.77	□□□□□ -0.69
TMEM254-208	ENST00000463209	MYOZ2	Q9NPC6	264 aa		10.77	□□□□□ -0.69
TMEM254-208	ENST00000463209	CREBZF	Q9NS37	354 aa		10.77	□□□□□ -0.69
TMEM254-208	ENST00000463209	ABT1	Q9ULW3	272 aa	Known RBP	10.77	□□□□□ -0.69
TMEM254-208	ENST00000463209	MYH13	Q9UKX3	1938 aa		10.76	□□□□□ -0.69
TMEM254-208	ENST00000463209	COL1A1	P02452	1464 aa	Predicted RBP	10.76	□□□□□ -0.69
TMEM254-208	ENST00000463209	PNMA6E	A0A0J9YXQ4	647 aa		10.76	□□□□□ -0.69
TMEM254-208	ENST00000463209	SRGAP3	O43295	1099 aa		10.76	□□□□□ -0.69
TMEM254-208	ENST00000463209	PDE8B	O95263	885 aa		10.76	□□□□□ -0.69
TMEM254-208	ENST00000463209	CELF2	O95319	508 aa	Known RBP	10.76	□□□□□ -0.69
TMEM254-208	ENST00000463209	GNAI3	P08754	354 aa		10.76	□□□□□ -0.69
TMEM254-208	ENST00000463209	BCAM	P50895	628 aa		10.76	□□□□□ -0.69
TMEM254-208	ENST00000463209	ZNF280A	P59817	542 aa	Predicted RBP	10.76	□□□□□ -0.69
TMEM254-208	ENST00000463209	CHAF1A	Q13111	956 aa	Predicted RBP	10.76	□□□□□ -0.69
TMEM254-208	ENST00000463209	SCARF1	Q14162	830 aa		10.76	□□□□□ -0.69

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