RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 TAF5LO75529 589 aa17.37■□□□□ 0.37
HDAC6-213ENST00000462730 RAB3GAP1Q15042 981 aa17.37■□□□□ 0.37
HDAC6-213ENST00000462730 PUM3Q15397 648 aaKnown RBP17.37■□□□□ 0.37
HDAC6-213ENST00000462730 MCMDC2Q4G0Z9 681 aa17.37■□□□□ 0.37
HDAC6-213ENST00000462730 CCDC129Q6ZRS4 1044 aa17.37■□□□□ 0.37
HDAC6-213ENST00000462730 CNBD1Q8NA66 436 aa17.37■□□□□ 0.37
HDAC6-213ENST00000462730 AKT1S1Q96B36 256 aa17.37■□□□□ 0.37
HDAC6-213ENST00000462730 SLC27A2O14975 620 aa17.36■□□□□ 0.37
HDAC6-213ENST00000462730 ZKSCAN1P17029 563 aaPredicted RBP17.36■□□□□ 0.37
HDAC6-213ENST00000462730 FKBP4Q02790 459 aaKnown RBP eCLIP17.36■□□□□ 0.37
HDAC6-213ENST00000462730 ANKRD18AQ8IVF6 992 aa17.36■□□□□ 0.37
HDAC6-213ENST00000462730 JAKMIP1Q96N16 626 aaKnown RBP17.36■□□□□ 0.37
HDAC6-213ENST00000462730 SEC62Q99442 399 aaKnown RBP17.36■□□□□ 0.37
HDAC6-213ENST00000462730 CASTP20810 708 aaKnown RBP17.35■□□□□ 0.37
HDAC6-213ENST00000462730 SCARF1Q14162 830 aa17.35■□□□□ 0.37
HDAC6-213ENST00000462730 TICAM2Q86XR7 235 aa17.35■□□□□ 0.37
HDAC6-213ENST00000462730 ZGPATQ8N5A5 531 aaKnown RBP17.35■□□□□ 0.37
HDAC6-213ENST00000462730 FGFR2P21802 821 aa17.35■□□□□ 0.37
HDAC6-213ENST00000462730 LPIN2Q92539 896 aa17.35■□□□□ 0.37
HDAC6-213ENST00000462730 TNPO1Q92973 898 aaKnown RBP17.35■□□□□ 0.37
HDAC6-213ENST00000462730 TTC14Q96N46 770 aa17.35■□□□□ 0.37
HDAC6-213ENST00000462730 CWC22Q9HCG8 908 aaKnown RBP17.35■□□□□ 0.37
HDAC6-213ENST00000462730 HELLSQ9NRZ9 838 aa17.35■□□□□ 0.37
HDAC6-213ENST00000462730 RNF113AO15541 343 aaKnown RBP17.34■□□□□ 0.37
HDAC6-213ENST00000462730 CPA1P15085 419 aa17.34■□□□□ 0.37
HDAC6-213ENST00000462730 MCM4P33991 863 aa17.34■□□□□ 0.37
HDAC6-213ENST00000462730 CHRNDQ07001 517 aa17.34■□□□□ 0.37
HDAC6-213ENST00000462730 ADCK5Q3MIX3 580 aa17.34■□□□□ 0.37
HDAC6-213ENST00000462730 SLFNL1Q499Z3 407 aa17.34■□□□□ 0.37
HDAC6-213ENST00000462730 ZMYM1Q5SVZ6 1142 aa17.34■□□□□ 0.37
HDAC6-213ENST00000462730 RNF20Q5VTR2 975 aa17.34■□□□□ 0.37
HDAC6-213ENST00000462730 CELF1Q92879 486 aaKnown RBP17.34■□□□□ 0.37
HDAC6-213ENST00000462730 TM6SF1Q9BZW5 370 aa17.34■□□□□ 0.37
HDAC6-213ENST00000462730 ZAP70P43403 619 aa17.33■□□□□ 0.37
HDAC6-213ENST00000462730 CUL4AQ13619 759 aa17.33■□□□□ 0.37
HDAC6-213ENST00000462730 PRR5LQ6MZQ0 368 aa17.33■□□□□ 0.37
HDAC6-213ENST00000462730 SNAP23O00161 211 aa17.33■□□□□ 0.36
HDAC6-213ENST00000462730 SLC5A1P13866 664 aa17.33■□□□□ 0.36
HDAC6-213ENST00000462730 AK2P54819 239 aa17.33■□□□□ 0.36
HDAC6-213ENST00000462730 ZSWIM6Q9HCJ5 1215 aa17.33■□□□□ 0.36
HDAC6-213ENST00000462730 BSDC1Q9NW68 430 aaPredicted RBP17.33■□□□□ 0.36
HDAC6-213ENST00000462730 AKAP11Q9UKA4 1901 aa17.33■□□□□ 0.36
HDAC6-213ENST00000462730 TM4SF1P30408 202 aa17.32■□□□□ 0.36
HDAC6-213ENST00000462730 PI16Q6UXB8 463 aa17.32■□□□□ 0.36
HDAC6-213ENST00000462730 HMG20BQ9P0W2 317 aa17.32■□□□□ 0.36
HDAC6-213ENST00000462730 CYP46A1Q9Y6A2 500 aa17.32■□□□□ 0.36
HDAC6-213ENST00000462730 U3KPZ7 1027 aaPredicted RBP17.32■□□□□ 0.36
HDAC6-213ENST00000462730 RPAP1Q9BWH6 1393 aaPredicted RBP17.32■□□□□ 0.36
HDAC6-213ENST00000462730 SERPINB2P05120 415 aa17.31■□□□□ 0.36
HDAC6-213ENST00000462730 MCAMP43121 646 aa17.31■□□□□ 0.36
HDAC6-213ENST00000462730 DDR1Q08345 913 aa17.31■□□□□ 0.36
HDAC6-213ENST00000462730 LRRFIP1Q32MZ4 808 aaKnown RBP17.31■□□□□ 0.36
HDAC6-213ENST00000462730 CCDC102BQ68D86 513 aa17.31■□□□□ 0.36
HDAC6-213ENST00000462730 COL23A1Q86Y22 540 aaPredicted RBP17.31■□□□□ 0.36
HDAC6-213ENST00000462730 ZNF512BQ96KM6 892 aaPredicted RBP17.31■□□□□ 0.36
HDAC6-213ENST00000462730 PDRG1Q9NUG6 133 aa17.31■□□□□ 0.36
HDAC6-213ENST00000462730 PHKA1P46020 1223 aa17.31■□□□□ 0.36
HDAC6-213ENST00000462730 NUCB2P80303 420 aa17.31■□□□□ 0.36
HDAC6-213ENST00000462730 FAM43AQ8N2R8 423 aa17.31■□□□□ 0.36
HDAC6-213ENST00000462730 MAST3O60307 1309 aa17.31■□□□□ 0.36
HDAC6-213ENST00000462730 POLRMTO00411 1230 aaKnown RBP17.3■□□□□ 0.36
HDAC6-213ENST00000462730 PSMA5P28066 241 aa17.3■□□□□ 0.36
HDAC6-213ENST00000462730 ST5P78524 1137 aa17.3■□□□□ 0.36
HDAC6-213ENST00000462730 VPS53Q5VIR6 699 aa17.3■□□□□ 0.36
HDAC6-213ENST00000462730 RUFY3Q7L099 469 aa17.3■□□□□ 0.36
HDAC6-213ENST00000462730 TAF6LQ9Y6J9 622 aa17.3■□□□□ 0.36
HDAC6-213ENST00000462730 M0R2C6 588 aa17.29■□□□□ 0.36
HDAC6-213ENST00000462730 ZFYP08048 801 aaPredicted RBP17.29■□□□□ 0.36
HDAC6-213ENST00000462730 UQCRFS1P1P0C7P4 283 aa17.29■□□□□ 0.36
HDAC6-213ENST00000462730 ARID4AP29374 1257 aaPredicted RBP17.29■□□□□ 0.36
HDAC6-213ENST00000462730 RPS8P62241 208 aaKnown RBP17.29■□□□□ 0.36
HDAC6-213ENST00000462730 L1TD1Q5T7N2 865 aaKnown RBP17.29■□□□□ 0.36
HDAC6-213ENST00000462730 INTS4Q96HW7 963 aaKnown RBP17.29■□□□□ 0.36
HDAC6-213ENST00000462730 GBP4Q96PP9 640 aa17.29■□□□□ 0.36
HDAC6-213ENST00000462730 PNPLA7Q6ZV29 1317 aa17.29■□□□□ 0.36
HDAC6-213ENST00000462730 EN1Q05925 392 aaPredicted RBP17.29■□□□□ 0.36
HDAC6-213ENST00000462730 EZH2Q15910 746 aaKnown RBP17.29■□□□□ 0.36
HDAC6-213ENST00000462730 MINPP1Q9UNW1 487 aa17.29■□□□□ 0.36
HDAC6-213ENST00000462730 LIMCH1Q9UPQ0 1083 aa17.29■□□□□ 0.36
HDAC6-213ENST00000462730 MYH7P12883 1935 aa17.29■□□□□ 0.36
HDAC6-213ENST00000462730 TSGA10IPQ3SY00 556 aa17.28■□□□□ 0.36
HDAC6-213ENST00000462730 FLAD1Q8NFF5 587 aa17.28■□□□□ 0.36
HDAC6-213ENST00000462730 LARP6Q9BRS8 491 aaKnown RBP17.28■□□□□ 0.36
HDAC6-213ENST00000462730 NRXN2Q9P2S2 1712 aa17.28■□□□□ 0.36
HDAC6-213ENST00000462730 DDX11L8A8MPP1 907 aa17.28■□□□□ 0.36
HDAC6-213ENST00000462730 CYP2E1P05181 493 aaPredicted RBP17.28■□□□□ 0.36
HDAC6-213ENST00000462730 WASHC4Q2M389 1173 aa17.28■□□□□ 0.36
HDAC6-213ENST00000462730 BLOC1S2Q6QNY1 142 aa17.28■□□□□ 0.36
HDAC6-213ENST00000462730 OSBP2Q969R2 916 aa17.28■□□□□ 0.36
HDAC6-213ENST00000462730 CAMKK2Q96RR4 588 aa17.28■□□□□ 0.36
HDAC6-213ENST00000462730 DSCC1Q9BVC3 393 aa17.28■□□□□ 0.36
HDAC6-213ENST00000462730 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.28■□□□□ 0.36
HDAC6-213ENST00000462730 PKP1Q13835 747 aa17.27■□□□□ 0.36
HDAC6-213ENST00000462730 KRT32Q14532 448 aa17.27■□□□□ 0.36
HDAC6-213ENST00000462730 TTF1Q15361 905 aaPredicted RBP17.26■□□□□ 0.35
HDAC6-213ENST00000462730 NLGN1Q8N2Q7 840 aa17.26■□□□□ 0.35
HDAC6-213ENST00000462730 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.26■□□□□ 0.352e-8■■■■□ 24.1
HDAC6-213ENST00000462730 PIH1D3Q9NQM4 214 aaKnown RBP17.26■□□□□ 0.35
HDAC6-213ENST00000462730 ANKRD31Q8N7Z5 1873 aa17.26■□□□□ 0.35
HDAC6-213ENST00000462730 MYO5AQ9Y4I1 1855 aaKnown RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms