RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 ARFGAP2Q8N6H7 521 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 ARID3AQ99856 593 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 MAP3K19Q56UN5 1328 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 POLR3EQ9NVU0 708 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 MTMR6Q9Y217 621 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 PFKFB2O60825 505 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 KIF5BP33176 963 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 IARSP41252 1262 aaKnown RBP8.06□□□□□ -1.12
SYNE1-216ENST00000461872 FKBP15Q5T1M5 1219 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 TMC6Q7Z403 805 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 MAP4K1Q92918 833 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 SLIT1O75093 1534 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 CTAGE15A4D2H0 777 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 CTAGE8P0CG41 777 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 UBASH3AP57075 661 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 CTAGE6Q86UF2 777 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 FERMT3Q86UX7 667 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 CTAGE4Q8IX94 777 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 CCDC191Q8NCU4 936 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 F6X3S4 739 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 ZNF213O14771 459 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 CAMK4Q16566 473 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 RUBCNQ92622 972 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 AIDAQ96BJ3 306 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 CWC25Q9NXE8 425 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-216ENST00000461872 OPA1O60313 960 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 CBX1P83916 185 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 SPA17Q15506 151 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 IFNL2Q8IZJ0 200 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.06□□□□□ -1.12
SYNE1-216ENST00000461872 NLRP2Q9NX02 1062 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 PES1O00541 588 aaKnown RBP8.06□□□□□ -1.12
SYNE1-216ENST00000461872 IFIT1P09914 478 aaKnown RBP8.06□□□□□ -1.12
SYNE1-216ENST00000461872 IFI16Q16666 785 aaKnown RBP8.06□□□□□ -1.12
SYNE1-216ENST00000461872 RABGGTAQ92696 567 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 ATG3Q9NT62 314 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 MAP3K2Q9Y2U5 619 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 CUTAO60888 179 aa8.06□□□□□ -1.12
SYNE1-216ENST00000461872 MTHFSDQ2M296 383 aaKnown RBP8.06□□□□□ -1.12
SYNE1-216ENST00000461872 A0A087WZG4 1122 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 PCP11498 1178 aaKnown RBP8.05□□□□□ -1.12
SYNE1-216ENST00000461872 LSG1Q9H089 658 aaKnown RBP8.05□□□□□ -1.12
SYNE1-216ENST00000461872 BMP2KQ9NSY1 1161 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-216ENST00000461872 UTP14AQ9BVJ6 771 aaKnown RBP8.05□□□□□ -1.12
SYNE1-216ENST00000461872 SLC12A7Q9Y666 1083 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 STARD3NLO95772 234 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 ATF3P18847 181 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 SSRP1Q08945 709 aaKnown RBP8.05□□□□□ -1.12
SYNE1-216ENST00000461872 TACO1Q9BSH4 297 aaKnown RBP8.05□□□□□ -1.12
SYNE1-216ENST00000461872 BCL2L12Q9HB09 334 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 COPRSQ9NQ92 184 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 ORC3Q9UBD5 711 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-216ENST00000461872 RNF113AO15541 343 aaKnown RBP8.05□□□□□ -1.12
SYNE1-216ENST00000461872 CYLC1P35663 651 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-216ENST00000461872 KBTBD3Q8NAB2 608 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 KIF2CQ99661 725 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 FAM83GA6ND36 823 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 KRT86O43790 486 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 CALML3P27482 149 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 GNAQP50148 359 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 ANKRD13DQ6ZTN6 518 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 MAGEF1Q9HAY2 307 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 TMTC1Q8IUR5 882 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 USP44Q9H0E7 712 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 AMOTL2Q9Y2J4 779 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 SH3TC1Q8TE82 1336 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 MYL1P05976 194 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 KRI1Q8N9T8 703 aaKnown RBP8.05□□□□□ -1.12
SYNE1-216ENST00000461872 TSKSQ9UJT2 592 aa8.05□□□□□ -1.12
SYNE1-216ENST00000461872 RIOK3O14730 519 aaKnown RBP8.04□□□□□ -1.12
SYNE1-216ENST00000461872 URI1O94763 535 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-216ENST00000461872 SLC27A2O14975 620 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 PTGS1P23219 599 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 PAFAH1B1P43034 410 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 POTEDQ86YR6 584 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 CABP4P57796 275 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 ETF1P62495 437 aaKnown RBP8.04□□□□□ -1.12
SYNE1-216ENST00000461872 CCDC181Q5TID7 509 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 ELOA2Q8IYF1 753 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-216ENST00000461872 DCAF5Q96JK2 942 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 TNNQ9UQP3 1299 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 NPHP1O15259 732 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 ERCC5P28715 1186 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-216ENST00000461872 METAP2P50579 478 aaKnown RBP eCLIP8.04□□□□□ -1.12
SYNE1-216ENST00000461872 GNG11P61952 73 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 NMIQ13287 307 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-216ENST00000461872 IFIT5Q13325 482 aaKnown RBP8.04□□□□□ -1.12
SYNE1-216ENST00000461872 KIF4BQ2VIQ3 1234 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 RPAP1Q9BWH6 1393 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-216ENST00000461872 BICDL2A1A5D9 508 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 STX10O60499 249 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 FERMT2Q96AC1 680 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 TMEM131LA2VDJ0 1609 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 APBA1Q02410 837 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 PCMTD1Q96MG8 357 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-216ENST00000461872 CCDC151A5D8V7 595 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 SMARCC1Q92922 1105 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-216ENST00000461872 DNAJC25Q9H1X3 360 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 RASSF4Q9H2L5 321 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 CBX8Q9HC52 389 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms