RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 LARP1Q6PKG0 1096 aaKnown RBP10.78□□□□□ -0.68
USP54-208ENST00000461520 STRN4Q9NRL3 753 aa10.78□□□□□ -0.68
USP54-208ENST00000461520 ACIN1Q9UKV3 1341 aaKnown RBP10.78□□□□□ -0.68
USP54-208ENST00000461520 MST1RQ04912 1400 aa10.77□□□□□ -0.68
USP54-208ENST00000461520 ADGRL3Q9HAR2 1447 aa10.77□□□□□ -0.68
USP54-208ENST00000461520 C21orf2O43822 256 aa10.77□□□□□ -0.69
USP54-208ENST00000461520 LGR5O75473 907 aa10.77□□□□□ -0.69
USP54-208ENST00000461520 SNRPNP63162 240 aaKnown RBP10.77□□□□□ -0.69
USP54-208ENST00000461520 KANK3Q6NY19 840 aa10.77□□□□□ -0.69
USP54-208ENST00000461520 CCDC144AA2RUR9 1427 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 PTCH1Q13635 1447 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 PRAG1Q86YV5 1406 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 ASXL1Q8IXJ9 1541 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 NEURL1BA8MQ27 555 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 PPP1R12BO60237 982 aaPredicted RBP10.76□□□□□ -0.69
USP54-208ENST00000461520 FAM157BP0CG42 384 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 RXRBP28702 533 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 SEC13P55735 322 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 SAMD5Q5TGI4 173 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 PODNQ7Z5L7 613 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 MPHOSPH9Q99550 1183 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 NEUROD4Q9HD90 331 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 NHSL1Q5SYE7 1610 aa10.76□□□□□ -0.69
USP54-208ENST00000461520 PHF20L1A8MW92 1017 aa10.75□□□□□ -0.69
USP54-208ENST00000461520 ARAFP10398 606 aa10.75□□□□□ -0.69
USP54-208ENST00000461520 PTK7Q13308 1070 aa10.75□□□□□ -0.69
USP54-208ENST00000461520 SLCO4C1Q6ZQN7 724 aa10.75□□□□□ -0.69
USP54-208ENST00000461520 RHPN1Q8TCX5 695 aa10.75□□□□□ -0.69
USP54-208ENST00000461520 PHACTR1Q9C0D0 580 aa10.75□□□□□ -0.69
USP54-208ENST00000461520 RRAGCQ9HB90 399 aa10.75□□□□□ -0.69
USP54-208ENST00000461520 KLF15Q9UIH9 416 aa10.75□□□□□ -0.69
USP54-208ENST00000461520 ATAD2Q6PL18 1390 aa10.75□□□□□ -0.69
USP54-208ENST00000461520 SETD5Q9C0A6 1442 aa10.75□□□□□ -0.69
USP54-208ENST00000461520 EFSO43281 561 aa10.74□□□□□ -0.69
USP54-208ENST00000461520 DPYDQ12882 1025 aa10.74□□□□□ -0.69
USP54-208ENST00000461520 GRIN2CQ14957 1233 aa10.74□□□□□ -0.69
USP54-208ENST00000461520 FAM182BQ5T319 152 aa10.74□□□□□ -0.69
USP54-208ENST00000461520 GAS2L2Q8NHY3 880 aa10.74□□□□□ -0.69
USP54-208ENST00000461520 SCG3Q8WXD2 468 aaKnown RBP10.74□□□□□ -0.69
USP54-208ENST00000461520 HINFPQ9BQA5 517 aa10.74□□□□□ -0.69
USP54-208ENST00000461520 VRTNQ9H8Y1 702 aa10.74□□□□□ -0.69
USP54-208ENST00000461520 MARK1Q9P0L2 795 aa10.74□□□□□ -0.69
USP54-208ENST00000461520 CHMP3Q9Y3E7 222 aa10.74□□□□□ -0.69
USP54-208ENST00000461520 ROBO2Q9HCK4 1378 aa10.74□□□□□ -0.69
USP54-208ENST00000461520 PPLO60437 1756 aa10.73□□□□□ -0.69
USP54-208ENST00000461520 AMPD1P23109 780 aa10.73□□□□□ -0.69
USP54-208ENST00000461520 PCBP4P57723 403 aaKnown RBP10.73□□□□□ -0.69
USP54-208ENST00000461520 LRRC59Q96AG4 307 aaKnown RBP10.73□□□□□ -0.69
USP54-208ENST00000461520 AFF2P51816 1311 aa10.73□□□□□ -0.69
USP54-208ENST00000461520 SPATA31E1Q6ZUB1 1445 aa10.73□□□□□ -0.69
USP54-208ENST00000461520 NALCNQ8IZF0 1738 aa10.72□□□□□ -0.69
USP54-208ENST00000461520 EPXP11678 715 aa10.72□□□□□ -0.69
USP54-208ENST00000461520 HIRAP54198 1017 aaPredicted RBP10.72□□□□□ -0.69
USP54-208ENST00000461520 C1orf53Q5VUE5 145 aa10.72□□□□□ -0.69
USP54-208ENST00000461520 HSH2DQ96JZ2 352 aa10.72□□□□□ -0.69
USP54-208ENST00000461520 BTBD6Q96KE9 485 aa10.72□□□□□ -0.69
USP54-208ENST00000461520 PRR12Q9ULL5 1215 aa10.72□□□□□ -0.69
USP54-208ENST00000461520 ANKRD30BQ9BXX2 1392 aa10.72□□□□□ -0.69
USP54-208ENST00000461520 C1orf167Q5SNV9 1468 aa10.72□□□□□ -0.69
USP54-208ENST00000461520 CDK12Q9NYV4 1490 aaPredicted RBP10.72□□□□□ -0.69
USP54-208ENST00000461520 USP17L15C9J2P7 530 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 USP17L10C9JJH3 530 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 USP17L13C9JLJ4 530 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 USP17L12C9JPN9 530 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 USP17L11C9JVI0 530 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 USP17L21D6R901 530 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 USP17L18D6R9N7 530 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 USP17L22D6RA61 530 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 USP17L17D6RBQ6 530 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 USP17L19D6RCP7 530 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 USP17L20D6RJB6 530 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 USP17L24Q0WX57 530 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 SFSWAPQ12872 951 aaKnown RBP10.71□□□□□ -0.69
USP54-208ENST00000461520 RGL3Q3MIN7 710 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 CDCA8Q53HL2 280 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 CFAP70Q5T0N1 1121 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 ANKMY2Q8IV38 441 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 ADGRF5Q8IZF2 1346 aa10.71□□□□□ -0.69
USP54-208ENST00000461520 RGS12O14924 1447 aa10.7□□□□□ -0.7
USP54-208ENST00000461520 ADH6P28332 368 aa10.7□□□□□ -0.7
USP54-208ENST00000461520 LAMC2Q13753 1193 aa10.7□□□□□ -0.7
USP54-208ENST00000461520 FCHSD1Q86WN1 690 aa10.7□□□□□ -0.7
USP54-208ENST00000461520 ZNF280CQ8ND82 737 aa10.7□□□□□ -0.7
USP54-208ENST00000461520 DDX17Q92841 729 aaKnown RBP10.7□□□□□ -0.7
USP54-208ENST00000461520 C8orf37Q96NL8 207 aa10.7□□□□□ -0.7
USP54-208ENST00000461520 C2orf49Q9BVC5 232 aaPredicted RBP10.7□□□□□ -0.7
USP54-208ENST00000461520 GPC6Q9Y625 555 aaPredicted RBP10.7□□□□□ -0.7
USP54-208ENST00000461520 PNPLA6Q8IY17 1366 aa10.69□□□□□ -0.7
USP54-208ENST00000461520 FAM196BA6NMK8 535 aa10.69□□□□□ -0.7
USP54-208ENST00000461520 HOXB4P17483 251 aaPredicted RBP10.69□□□□□ -0.7
USP54-208ENST00000461520 GPAT2Q6NUI2 795 aa10.69□□□□□ -0.7
USP54-208ENST00000461520 ALDH16A1Q8IZ83 802 aa10.69□□□□□ -0.7
USP54-208ENST00000461520 NGLY1Q96IV0 654 aa10.69□□□□□ -0.7
USP54-208ENST00000461520 DCAF5Q96JK2 942 aa10.69□□□□□ -0.7
USP54-208ENST00000461520 TECPR2O15040 1411 aa10.68□□□□□ -0.7
USP54-208ENST00000461520 PIK3C2GO75747 1445 aa10.68□□□□□ -0.7
USP54-208ENST00000461520 RFX1P22670 979 aa10.68□□□□□ -0.7
USP54-208ENST00000461520 ZNF468Q5VIY5 522 aaPredicted RBP10.68□□□□□ -0.7
USP54-208ENST00000461520 SUSD3Q96L08 255 aa10.68□□□□□ -0.7
USP54-208ENST00000461520 ORAI2Q96SN7 254 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms