RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 TESPA1A2RU30 521 aaPredicted RBP21.59■■□□□ 1.05
SF3B4-202ENST00000457312 U2SURPO15042 1029 aaKnown RBP21.59■■□□□ 1.05
SF3B4-202ENST00000457312 GJA8P48165 433 aa21.59■■□□□ 1.05
SF3B4-202ENST00000457312 ARHGAP39Q9C0H5 1083 aa21.58■■□□□ 1.05
SF3B4-202ENST00000457312 RAPGEFL1Q9UHV5 662 aa21.58■■□□□ 1.05
SF3B4-202ENST00000457312 SH3TC1Q8TE82 1336 aa21.57■■□□□ 1.04
SF3B4-202ENST00000457312 G3V3G9 751 aa21.57■■□□□ 1.04
SF3B4-202ENST00000457312 PLA2G5P39877 138 aa21.57■■□□□ 1.04
SF3B4-202ENST00000457312 AMER1Q5JTC6 1135 aaPredicted RBP21.57■■□□□ 1.04
SF3B4-202ENST00000457312 DCAF8Q5TAQ9 597 aa21.57■■□□□ 1.04
SF3B4-202ENST00000457312 NLRP10Q86W26 655 aa21.57■■□□□ 1.04
SF3B4-202ENST00000457312 RPTORQ8N122 1335 aa21.56■■□□□ 1.04
SF3B4-202ENST00000457312 EVI5O60447 810 aa21.56■■□□□ 1.04
SF3B4-202ENST00000457312 SASH1O94885 1247 aa21.56■■□□□ 1.04
SF3B4-202ENST00000457312 FARP2O94887 1054 aaPredicted RBP21.56■■□□□ 1.04
SF3B4-202ENST00000457312 BMP8BP34820 402 aa21.56■■□□□ 1.04
SF3B4-202ENST00000457312 DCTN1Q14203 1278 aa21.56■■□□□ 1.04
SF3B4-202ENST00000457312 LRIT3Q3SXY7 679 aa21.56■■□□□ 1.04
SF3B4-202ENST00000457312 APOBEC3FQ8IUX4 373 aaKnown RBP21.56■■□□□ 1.04
SF3B4-202ENST00000457312 GDF15Q99988 308 aa21.56■■□□□ 1.04
SF3B4-202ENST00000457312 KNSTRNQ9Y448 316 aa21.56■■□□□ 1.04
SF3B4-202ENST00000457312 ECM29Q5VYK3 1845 aa21.56■■□□□ 1.04
SF3B4-202ENST00000457312 UFL1O94874 794 aa21.55■■□□□ 1.04
SF3B4-202ENST00000457312 LRP10Q7Z4F1 713 aa21.55■■□□□ 1.04
SF3B4-202ENST00000457312 MIS18AQ9NYP9 233 aa21.55■■□□□ 1.04
SF3B4-202ENST00000457312 PODXL2Q9NZ53 605 aa21.55■■□□□ 1.04
SF3B4-202ENST00000457312 USP17L3A6NCW0 530 aa21.54■■□□□ 1.04
SF3B4-202ENST00000457312 USP17L4A6NCW7 530 aa21.54■■□□□ 1.04
SF3B4-202ENST00000457312 GJB1P08034 283 aa21.54■■□□□ 1.04
SF3B4-202ENST00000457312 PRKAR2BP31323 418 aa21.54■■□□□ 1.04
SF3B4-202ENST00000457312 USP17L1Q7RTZ2 530 aa21.54■■□□□ 1.04
SF3B4-202ENST00000457312 RTF1Q92541 710 aaKnown RBP21.54■■□□□ 1.04
SF3B4-202ENST00000457312 TRMT112Q9UI30 125 aaKnown RBP21.54■■□□□ 1.04
SF3B4-202ENST00000457312 BCAMP50895 628 aa21.53■■□□□ 1.04
SF3B4-202ENST00000457312 TAF1CQ15572 869 aaPredicted RBP21.53■■□□□ 1.04
SF3B4-202ENST00000457312 UNCXA6NJT0 531 aa21.51■■□□□ 1.03
SF3B4-202ENST00000457312 GUCD1Q96NT3 240 aa21.51■■□□□ 1.03
SF3B4-202ENST00000457312 THUMPD2Q9BTF0 503 aaKnown RBP21.51■■□□□ 1.03
SF3B4-202ENST00000457312 MXD3Q9BW11 206 aa21.51■■□□□ 1.03
SF3B4-202ENST00000457312 RSPH6AQ9H0K4 717 aa21.51■■□□□ 1.03
SF3B4-202ENST00000457312 ZFYVE28Q9HCC9 887 aa21.51■■□□□ 1.03
SF3B4-202ENST00000457312 CCL5P13501 91 aa21.5■■□□□ 1.03
SF3B4-202ENST00000457312 LACTBP83111 547 aaPredicted RBP21.5■■□□□ 1.03
SF3B4-202ENST00000457312 SF3B3Q15393 1217 aaKnown RBP21.5■■□□□ 1.03
SF3B4-202ENST00000457312 TAF7Q15545 349 aaPredicted RBP21.5■■□□□ 1.03
SF3B4-202ENST00000457312 MS4A4AQ96JQ5 239 aa21.5■■□□□ 1.03
SF3B4-202ENST00000457312 GGA1Q9UJY5 639 aa21.5■■□□□ 1.03
SF3B4-202ENST00000457312 PRMT2P55345 433 aa21.49■■□□□ 1.03
SF3B4-202ENST00000457312 BRI3BPQ8WY22 251 aa21.49■■□□□ 1.03
SF3B4-202ENST00000457312 LAMA2P24043 3122 aaKnown RBP21.49■■□□□ 1.03
SF3B4-202ENST00000457312 PPP1R12BO60237 982 aaPredicted RBP21.48■■□□□ 1.03
SF3B4-202ENST00000457312 GNRH1P01148 92 aa21.48■■□□□ 1.03
SF3B4-202ENST00000457312 OGFOD1Q8N543 542 aa21.48■■□□□ 1.03
SF3B4-202ENST00000457312 U2AF1L4Q8WU68 220 aaKnown RBP21.48■■□□□ 1.03
SF3B4-202ENST00000457312 DLG5Q8TDM6 1919 aa21.48■■□□□ 1.03
SF3B4-202ENST00000457312 EIF4A1P60842 406 aaKnown RBP21.47■■□□□ 1.03
SF3B4-202ENST00000457312 HSP90AB3PQ58FF7 597 aa21.47■■□□□ 1.03
SF3B4-202ENST00000457312 DACT2Q5SW24 774 aa21.47■■□□□ 1.03
SF3B4-202ENST00000457312 PODNQ7Z5L7 613 aa21.47■■□□□ 1.03
SF3B4-202ENST00000457312 ZNF428Q96B54 188 aa21.47■■□□□ 1.03
SF3B4-202ENST00000457312 ZBED3Q96IU2 234 aaPredicted RBP21.47■■□□□ 1.03
SF3B4-202ENST00000457312 RNF208Q9H0X6 261 aa21.47■■□□□ 1.03
SF3B4-202ENST00000457312 DEFB129Q9H1M3 183 aa21.47■■□□□ 1.03
SF3B4-202ENST00000457312 ANKIB1Q9P2G1 1089 aa21.47■■□□□ 1.03
SF3B4-202ENST00000457312 HOXD11P31277 338 aaPredicted RBP21.46■■□□□ 1.03
SF3B4-202ENST00000457312 KIF22Q14807 665 aa21.46■■□□□ 1.03
SF3B4-202ENST00000457312 PDIA6Q15084 440 aa21.46■■□□□ 1.03
SF3B4-202ENST00000457312 TDHQ8IZJ6 230 aa21.46■■□□□ 1.03
SF3B4-202ENST00000457312 FAM43AQ8N2R8 423 aa21.46■■□□□ 1.03
SF3B4-202ENST00000457312 FAM122AQ96E09 287 aa21.46■■□□□ 1.03
SF3B4-202ENST00000457312 GRK4P32298 578 aa21.45■■□□□ 1.02
SF3B4-202ENST00000457312 RPS8P62241 208 aaKnown RBP21.45■■□□□ 1.02
SF3B4-202ENST00000457312 PROSER3Q2NL68 480 aa21.45■■□□□ 1.02
SF3B4-202ENST00000457312 OPTNQ96CV9 577 aa21.44■■□□□ 1.02
SF3B4-202ENST00000457312 MYO3BQ8WXR4 1341 aa21.44■■□□□ 1.02
SF3B4-202ENST00000457312 HTATSF1O43719 755 aaKnown RBP21.43■■□□□ 1.02
SF3B4-202ENST00000457312 CTGFP29279 349 aa21.43■■□□□ 1.02
SF3B4-202ENST00000457312 IREB2P48200 963 aaKnown RBP21.43■■□□□ 1.02
SF3B4-202ENST00000457312 RIPOR2Q9Y4F9 1068 aa21.43■■□□□ 1.02
SF3B4-202ENST00000457312 IRS2Q9Y4H2 1338 aa21.43■■□□□ 1.02
SF3B4-202ENST00000457312 CCL15-CCL14A0A0B4J2E2 113 aa21.42■■□□□ 1.02
SF3B4-202ENST00000457312 TLR2O60603 784 aa21.42■■□□□ 1.02
SF3B4-202ENST00000457312 ANXA1P04083 346 aa21.42■■□□□ 1.02
SF3B4-202ENST00000457312 CCL15Q16663 113 aa21.42■■□□□ 1.02
SF3B4-202ENST00000457312 ANKRD13AQ8IZ07 590 aa21.42■■□□□ 1.02
SF3B4-202ENST00000457312 ELP3Q9H9T3 547 aa21.42■■□□□ 1.02
SF3B4-202ENST00000457312 SRRDQ9UH36 339 aa21.42■■□□□ 1.02
SF3B4-202ENST00000457312 ZMYND8Q9ULU4 1186 aaPredicted RBP21.42■■□□□ 1.02
SF3B4-202ENST00000457312 PPP2R3BQ9Y5P8 575 aa21.42■■□□□ 1.02
SF3B4-202ENST00000457312 COL2A1P02458 1487 aaPredicted RBP21.4■■□□□ 1.02
SF3B4-202ENST00000457312 USP2O75604 605 aaPredicted RBP21.4■■□□□ 1.02
SF3B4-202ENST00000457312 ECM2O94769 699 aaPredicted RBP21.4■■□□□ 1.02
SF3B4-202ENST00000457312 SGPL1O95470 568 aa21.4■■□□□ 1.02
SF3B4-202ENST00000457312 RAET1EQ8TD07 263 aa21.4■■□□□ 1.02
SF3B4-202ENST00000457312 PNISRQ8TF01 805 aaKnown RBP21.4■■□□□ 1.02
SF3B4-202ENST00000457312 CNKSR2Q8WXI2 1034 aa21.4■■□□□ 1.02
SF3B4-202ENST00000457312 UNC93B1Q9H1C4 597 aa21.4■■□□□ 1.02
SF3B4-202ENST00000457312 NCOR1O75376 2440 aa21.4■■□□□ 1.02
SF3B4-202ENST00000457312 MGAMO43451 1857 aa21.39■■□□□ 1.02
SF3B4-202ENST00000457312 MAGEA10P43363 369 aaPredicted RBP21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms