RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 SPTA1P02549 2419 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 MGEA5O60502 916 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 RPL13P26373 211 aaKnown RBP5.9□□□□□ -1.47
CSMD3-204ENST00000455883 ZNF622Q969S3 477 aaKnown RBP eCLIP5.9□□□□□ -1.47
CSMD3-204ENST00000455883 ZBTB7CA1YPR0 619 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 SPTY2D1Q68D10 685 aaPredicted RBP5.9□□□□□ -1.47
CSMD3-204ENST00000455883 CCDC62Q6P9F0 684 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 IFT20Q8IY31 132 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 EXOC6Q8TAG9 804 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 HYPKQ9NX55 129 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 A0A1B0GW55 424 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 DUX4L2P0CJ85 424 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 DUX4L3P0CJ86 424 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 DUX4L4P0CJ87 422 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 DUX4L5P0CJ88 424 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 DUX4L6P0CJ89 424 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 DUX4L7P0CJ90 424 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 ZNF830Q96NB3 372 aaPredicted RBP5.9□□□□□ -1.47
CSMD3-204ENST00000455883 CCDC68Q9H2F9 335 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 DUX4Q9UBX2 424 aa5.9□□□□□ -1.47
CSMD3-204ENST00000455883 FOXP2O15409 715 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 CCDC170Q8IYT3 715 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 FLOT1O75955 427 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 SSBP05455 408 aaKnown RBP eCLIP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 SLC17A8Q8NDX2 589 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 RRP36Q96EU6 259 aaKnown RBP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 NBPF8Q3BBV2 869 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 CCDC152Q4G0S7 254 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 UTP14CQ5TAP6 766 aaKnown RBP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 ZNF713Q8N859 430 aaPredicted RBP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 NKIRAS1Q9NYS0 192 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 MAP2P11137 1827 aaKnown RBP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 LARP1Q6PKG0 1096 aaKnown RBP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 URB2Q14146 1524 aaKnown RBP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 MAP7D1Q3KQU3 841 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 MRC2Q9UBG0 1479 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 PPP1R14CQ8TAE6 165 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 CCDC124Q96CT7 223 aaKnown RBP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 PRPF6O94906 941 aaKnown RBP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 MEX3CQ5U5Q3 659 aaKnown RBP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 CALCOCO2Q13137 446 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 TWISTNBQ3B726 338 aaPredicted RBP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 ATP6V1AP38606 617 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 ANKRD27Q96NW4 1050 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 RABEP2Q9H5N1 569 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 FAF1Q9UNN5 650 aaPredicted RBP5.89□□□□□ -1.47
CSMD3-204ENST00000455883 ARAP1Q96P48 1450 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 RTL1A6NKG5 1358 aa5.89□□□□□ -1.47
CSMD3-204ENST00000455883 ERICH4A6NGS2 130 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 MYL1P05976 194 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 CWC27Q6UX04 472 aaKnown RBP5.88□□□□□ -1.47
CSMD3-204ENST00000455883 CATIPQ7Z7H3 387 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 KRT23Q9C075 422 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 LNPKQ9C0E8 428 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.88□□□□□ -1.47
CSMD3-204ENST00000455883 RIC3Q7Z5B4 369 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 PIK3R4Q99570 1358 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 SURF6O75683 361 aaKnown RBP5.88□□□□□ -1.47
CSMD3-204ENST00000455883 EIF2S2P20042 333 aaKnown RBP5.88□□□□□ -1.47
CSMD3-204ENST00000455883 MAML3Q96JK9 1138 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 BAG4O95429 457 aaKnown RBP5.88□□□□□ -1.47
CSMD3-204ENST00000455883 CAPN2P17655 700 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 TMCO5AQ8N6Q1 288 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 TTC3P53804 2025 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 ASXL2Q76L83 1435 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 APAF1O14727 1248 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 RTL9Q8NET4 1388 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 THAP12O43422 761 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 STX6O43752 255 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 CTNNA2P26232 953 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 SMC5Q8IY18 1101 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 SPATS2LQ9NUQ6 558 aaKnown RBP5.88□□□□□ -1.47
CSMD3-204ENST00000455883 KIAA1210Q9ULL0 1709 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 SYCE3A1L190 88 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 PAK3O75914 559 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-204ENST00000455883 NEBLO76041 1014 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 UBL4BQ8N7F7 174 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 NUF2Q9BZD4 464 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 RAB17Q9H0T7 212 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 EFCC1Q9HA90 598 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 ARID1BQ8NFD5 2236 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-204ENST00000455883 PDE4BQ07343 736 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 NBPF10Q6P3W6 841 aaKnown RBP5.88□□□□□ -1.47
CSMD3-204ENST00000455883 NAIPQ13075 1403 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 CCDC144CPQ8IYA2 1237 aa5.88□□□□□ -1.47
CSMD3-204ENST00000455883 SOS2Q07890 1332 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-204ENST00000455883 A0A1W2PRG0 241 aa5.87□□□□□ -1.47
CSMD3-204ENST00000455883 ARHGAP6O43182 974 aa5.87□□□□□ -1.47
CSMD3-204ENST00000455883 CNOT10Q9H9A5 744 aaKnown RBP5.87□□□□□ -1.47
CSMD3-204ENST00000455883 A0A1B0GVL5 298 aa5.87□□□□□ -1.47
CSMD3-204ENST00000455883 CEP104O60308 925 aa5.87□□□□□ -1.47
CSMD3-204ENST00000455883 PDE4CQ08493 712 aa5.87□□□□□ -1.47
CSMD3-204ENST00000455883 MAP3K12Q12852 859 aa5.87□□□□□ -1.47
CSMD3-204ENST00000455883 NRBF2Q96F24 287 aa5.87□□□□□ -1.47
CSMD3-204ENST00000455883 SPAG5Q96R06 1193 aa5.87□□□□□ -1.47
CSMD3-204ENST00000455883 LRRIQ1Q96JM4 1722 aa5.87□□□□□ -1.47
CSMD3-204ENST00000455883 FRMD3A2A2Y4 597 aa5.87□□□□□ -1.47
CSMD3-204ENST00000455883 CEP290O15078 2479 aa5.87□□□□□ -1.47
CSMD3-204ENST00000455883 HNRNPCL1O60812 293 aaKnown RBP5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms