RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 LTBP1Q14766 1721 aa13.52□□□□□ -0.24
SCN9A-205ENST00000454569 PDE8BO95263 885 aa13.52□□□□□ -0.25
SCN9A-205ENST00000454569 CLASRPQ8N2M8 674 aaKnown RBP13.52□□□□□ -0.25
SCN9A-205ENST00000454569 ZNF622Q969S3 477 aaKnown RBP eCLIP13.52□□□□□ -0.25
SCN9A-205ENST00000454569 A0A1B0GUL7 405 aa13.51□□□□□ -0.25
SCN9A-205ENST00000454569 NPR1P16066 1061 aa13.51□□□□□ -0.25
SCN9A-205ENST00000454569 DPEP1P16444 411 aa13.51□□□□□ -0.25
SCN9A-205ENST00000454569 FGFR2P21802 821 aa13.51□□□□□ -0.25
SCN9A-205ENST00000454569 PDE1AP54750 535 aa13.51□□□□□ -0.25
SCN9A-205ENST00000454569 MASTLQ96GX5 879 aa13.51□□□□□ -0.25
SCN9A-205ENST00000454569 WWC3Q9ULE0 1092 aa13.51□□□□□ -0.25
SCN9A-205ENST00000454569 MROH5Q6ZUA9 1318 aa13.51□□□□□ -0.25
SCN9A-205ENST00000454569 H0YIN7 160 aa13.5□□□□□ -0.25
SCN9A-205ENST00000454569 CHRM1P11229 460 aaPredicted RBP13.5□□□□□ -0.25
SCN9A-205ENST00000454569 GSPT1P15170 499 aaKnown RBP13.5□□□□□ -0.25
SCN9A-205ENST00000454569 KLRK1P26718 216 aa13.5□□□□□ -0.25
SCN9A-205ENST00000454569 POLD1P28340 1107 aa13.5□□□□□ -0.25
SCN9A-205ENST00000454569 NEUROD6Q96NK8 337 aa13.5□□□□□ -0.25
SCN9A-205ENST00000454569 CHD4Q14839 1912 aa13.5□□□□□ -0.25
SCN9A-205ENST00000454569 MX1P20591 662 aa13.49□□□□□ -0.25
SCN9A-205ENST00000454569 GPSM2P81274 684 aa13.49□□□□□ -0.25
SCN9A-205ENST00000454569 PI4K2BQ8TCG2 481 aa13.49□□□□□ -0.25
SCN9A-205ENST00000454569 GPR101Q96P66 508 aaPredicted RBP13.49□□□□□ -0.25
SCN9A-205ENST00000454569 GPR108Q9NPR9 543 aa13.49□□□□□ -0.25
SCN9A-205ENST00000454569 STAP2Q9UGK3 403 aa13.49□□□□□ -0.25
SCN9A-205ENST00000454569 IFIT2P09913 472 aaKnown RBP13.49□□□□□ -0.25
SCN9A-205ENST00000454569 ATP2B3Q16720 1220 aa13.49□□□□□ -0.25
SCN9A-205ENST00000454569 STYK1Q6J9G0 422 aa13.49□□□□□ -0.25
SCN9A-205ENST00000454569 TXNRD3Q86VQ6 643 aa13.49□□□□□ -0.25
SCN9A-205ENST00000454569 XAGE2Q96GT9 111 aa13.49□□□□□ -0.25
SCN9A-205ENST00000454569 OSBPL3Q9H4L5 887 aa13.49□□□□□ -0.25
SCN9A-205ENST00000454569 PPP1R1BQ9UD71 204 aaPredicted RBP13.49□□□□□ -0.25
SCN9A-205ENST00000454569 NDUFB9Q9Y6M9 179 aa13.49□□□□□ -0.25
SCN9A-205ENST00000454569 DUOX1Q9NRD9 1551 aa13.48□□□□□ -0.25
SCN9A-205ENST00000454569 MYH13Q9UKX3 1938 aa13.48□□□□□ -0.25
SCN9A-205ENST00000454569 PPEF1O14829 653 aaPredicted RBP13.48□□□□□ -0.25
SCN9A-205ENST00000454569 BBOX1O75936 387 aa13.48□□□□□ -0.25
SCN9A-205ENST00000454569 MAP4K4O95819 1239 aaPredicted RBP13.48□□□□□ -0.25
SCN9A-205ENST00000454569 IRS2Q9Y4H2 1338 aa13.48□□□□□ -0.25
SCN9A-205ENST00000454569 SOCS7O14512 581 aa13.47□□□□□ -0.25
SCN9A-205ENST00000454569 TTC22Q5TAA0 569 aa13.47□□□□□ -0.25
SCN9A-205ENST00000454569 PRPF40BQ6NWY9 871 aaKnown RBP13.47□□□□□ -0.25
SCN9A-205ENST00000454569 NLGN2Q8NFZ4 835 aa13.47□□□□□ -0.25
SCN9A-205ENST00000454569 C7orf43Q8WVR3 580 aa13.47□□□□□ -0.25
SCN9A-205ENST00000454569 SPON1Q9HCB6 807 aa13.47□□□□□ -0.25
SCN9A-205ENST00000454569 ALDH1B1P30837 517 aa13.46□□□□□ -0.25
SCN9A-205ENST00000454569 SCARF1Q14162 830 aa13.46□□□□□ -0.25
SCN9A-205ENST00000454569 PUM3Q15397 648 aaKnown RBP13.46□□□□□ -0.25
SCN9A-205ENST00000454569 SP8Q8IXZ3 490 aa13.46□□□□□ -0.25
SCN9A-205ENST00000454569 EDC3Q96F86 508 aaKnown RBP13.46□□□□□ -0.25
SCN9A-205ENST00000454569 ATP6V0A2Q9Y487 856 aa13.46□□□□□ -0.25
SCN9A-205ENST00000454569 PHKA1P46020 1223 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 BCAMP50895 628 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 LPIN2Q92539 896 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 BOLA2Q9H3K6 86 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 ECHDC1Q9NTX5 307 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 POLLQ9UGP5 575 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 NSFL1CQ9UNZ2 370 aaKnown RBP13.45□□□□□ -0.26
SCN9A-205ENST00000454569 AKAP2Q9Y2D5 859 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 SNED1Q8TER0 1413 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 GYG1P46976 350 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 PI16Q6UXB8 463 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 ANKIB1Q9P2G1 1089 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 TAOK2Q9UL54 1235 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 ZNF804BA4D1E1 1349 aa13.45□□□□□ -0.26
SCN9A-205ENST00000454569 CCDC88AQ3V6T2 1871 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 C21orf2O43822 256 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 SDSP20132 328 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 TGFB2P61812 414 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 UBE4AQ14139 1066 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 CCDC102BQ68D86 513 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 TBC1D16Q8TBP0 767 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 CNKSR1Q969H4 720 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 FAM84BQ96KN1 310 aaPredicted RBP13.44□□□□□ -0.26
SCN9A-205ENST00000454569 ANKRD2Q9GZV1 360 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 SNRKQ9NRH2 765 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 XDHP47989 1333 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 TTC41PQ6P2S7 1318 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 FER1L6Q2WGJ9 1857 aa13.44□□□□□ -0.26
SCN9A-205ENST00000454569 UTRNP46939 3433 aa13.43□□□□□ -0.26
SCN9A-205ENST00000454569 MYH7P12883 1935 aa13.43□□□□□ -0.26
SCN9A-205ENST00000454569 SLC5A1P13866 664 aa13.43□□□□□ -0.26
SCN9A-205ENST00000454569 ATP5JP18859 108 aa13.43□□□□□ -0.26
SCN9A-205ENST00000454569 TTLL6Q8N841 843 aa13.43□□□□□ -0.26
SCN9A-205ENST00000454569 PODXL2Q9NZ53 605 aa13.43□□□□□ -0.26
SCN9A-205ENST00000454569 IQSEC3Q9UPP2 1182 aaPredicted RBP13.43□□□□□ -0.26
SCN9A-205ENST00000454569 CD2APQ9Y5K6 639 aa13.43□□□□□ -0.26
SCN9A-205ENST00000454569 ARFGEF1Q9Y6D6 1849 aa13.43□□□□□ -0.26
SCN9A-205ENST00000454569 CHGBP05060 677 aa13.42□□□□□ -0.26
SCN9A-205ENST00000454569 IFIT1P09914 478 aaKnown RBP13.42□□□□□ -0.26
SCN9A-205ENST00000454569 MCAMP43121 646 aa13.42□□□□□ -0.26
SCN9A-205ENST00000454569 BMP2KLQ5H9B9 411 aa13.42□□□□□ -0.26
SCN9A-205ENST00000454569 FHDC1Q9C0D6 1143 aaPredicted RBP13.42□□□□□ -0.26
SCN9A-205ENST00000454569 ANTXR1Q9H6X2 564 aa13.42□□□□□ -0.26
SCN9A-205ENST00000454569 AOX1Q06278 1338 aa13.42□□□□□ -0.26
SCN9A-205ENST00000454569 SCN9AQ15858 1988 aa13.42□□□□□ -0.26
SCN9A-205ENST00000454569 COL1A1P02452 1464 aaPredicted RBP13.41□□□□□ -0.26
SCN9A-205ENST00000454569 UFL1O94874 794 aa13.41□□□□□ -0.26
SCN9A-205ENST00000454569 C8orf34Q49A92 452 aa13.41□□□□□ -0.26
SCN9A-205ENST00000454569 GORABQ5T7V8 394 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms