RNA–Protein interactions for RNA: ENST00000448520.5

PDLIM2-213, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-213ENST00000448520 TSKSQ9UJT2 592 aa17.5■□□□□ 0.39
PDLIM2-213ENST00000448520 MMP14P50281 582 aa17.49■□□□□ 0.39
PDLIM2-213ENST00000448520 ZNF157P51786 506 aaPredicted RBP17.49■□□□□ 0.39
PDLIM2-213ENST00000448520 SCARF1Q14162 830 aa17.49■□□□□ 0.39
PDLIM2-213ENST00000448520 MYH16Q9H6N6 1097 aa17.49■□□□□ 0.39
PDLIM2-213ENST00000448520 CACNA1FO60840 1977 aa17.48■□□□□ 0.39
PDLIM2-213ENST00000448520 FAM155AB1AL88 458 aaPredicted RBP17.48■□□□□ 0.39
PDLIM2-213ENST00000448520 IGHMBP2P38935 993 aaKnown RBP17.48■□□□□ 0.39
PDLIM2-213ENST00000448520 EXOSC9Q06265 439 aaKnown RBP17.48■□□□□ 0.39
PDLIM2-213ENST00000448520 CWF19L2Q2TBE0 894 aaKnown RBP17.48■□□□□ 0.39
PDLIM2-213ENST00000448520 REM2Q8IYK8 340 aaPredicted RBP17.48■□□□□ 0.39
PDLIM2-213ENST00000448520 PLA2G12BQ9BX93 195 aa17.48■□□□□ 0.39
PDLIM2-213ENST00000448520 GREM2Q9H772 168 aa17.48■□□□□ 0.39
PDLIM2-213ENST00000448520 MYOZ2Q9NPC6 264 aa17.48■□□□□ 0.39
PDLIM2-213ENST00000448520 LEMD3Q9Y2U8 911 aa17.48■□□□□ 0.39
PDLIM2-213ENST00000448520 MYH3P11055 1940 aa17.48■□□□□ 0.39
PDLIM2-213ENST00000448520 PITPNM2Q9BZ72 1349 aa17.47■□□□□ 0.39
PDLIM2-213ENST00000448520 CCT4P50991 539 aaKnown RBP17.47■□□□□ 0.39
PDLIM2-213ENST00000448520 FKBP1BP68106 108 aa17.47■□□□□ 0.39
PDLIM2-213ENST00000448520 ANGEL2Q5VTE6 544 aaKnown RBP17.47■□□□□ 0.39
PDLIM2-213ENST00000448520 ZIC5Q96T25 663 aa17.47■□□□□ 0.39
PDLIM2-213ENST00000448520 COA1Q9GZY4 146 aa17.47■□□□□ 0.39
PDLIM2-213ENST00000448520 PSME4Q14997 1843 aa17.47■□□□□ 0.39
PDLIM2-213ENST00000448520 MED23Q9ULK4 1368 aa17.46■□□□□ 0.39
PDLIM2-213ENST00000448520 CCDC85CA6NKD9 419 aa17.46■□□□□ 0.39
PDLIM2-213ENST00000448520 KIF23Q02241 960 aaPredicted RBP17.46■□□□□ 0.39
PDLIM2-213ENST00000448520 GCKRQ14397 625 aa17.46■□□□□ 0.39
PDLIM2-213ENST00000448520 G2E3Q7L622 706 aa17.46■□□□□ 0.39
PDLIM2-213ENST00000448520 UBE3BQ7Z3V4 1068 aa17.46■□□□□ 0.39
PDLIM2-213ENST00000448520 OGFOD1Q8N543 542 aa17.46■□□□□ 0.39
PDLIM2-213ENST00000448520 CDCA5Q96FF9 252 aa17.46■□□□□ 0.39
PDLIM2-213ENST00000448520 ANKRD2Q9GZV1 360 aa17.46■□□□□ 0.39
PDLIM2-213ENST00000448520 SAGE1Q9NXZ1 904 aa17.46■□□□□ 0.39
PDLIM2-213ENST00000448520 MYO3BQ8WXR4 1341 aa17.46■□□□□ 0.38
PDLIM2-213ENST00000448520 FLIIQ13045 1269 aa17.45■□□□□ 0.38
PDLIM2-213ENST00000448520 STRIP1Q5VSL9 837 aa17.45■□□□□ 0.38
PDLIM2-213ENST00000448520 MPHOSPH8Q99549 860 aa17.45■□□□□ 0.38
PDLIM2-213ENST00000448520 ASTN2O75129 1339 aaPredicted RBP17.45■□□□□ 0.38
PDLIM2-213ENST00000448520 CSF1RP07333 972 aa17.44■□□□□ 0.38
PDLIM2-213ENST00000448520 SLC10A3P09131 477 aa17.44■□□□□ 0.38
PDLIM2-213ENST00000448520 ITGA6P23229 1130 aa17.44■□□□□ 0.38
PDLIM2-213ENST00000448520 FKBP5Q13451 457 aaPredicted RBP17.44■□□□□ 0.38
PDLIM2-213ENST00000448520 LINS1Q8NG48 757 aa17.44■□□□□ 0.38
PDLIM2-213ENST00000448520 DNAAF4Q8WXU2 420 aa17.44■□□□□ 0.38
PDLIM2-213ENST00000448520 MCOLN1Q9GZU1 580 aa17.44■□□□□ 0.38
PDLIM2-213ENST00000448520 AKAP11Q9UKA4 1901 aa17.43■□□□□ 0.38
PDLIM2-213ENST00000448520 WTIPA6NIX2 430 aaPredicted RBP17.43■□□□□ 0.38
PDLIM2-213ENST00000448520 RGS19P49795 217 aa17.43■□□□□ 0.38
PDLIM2-213ENST00000448520 DACT2Q5SW24 774 aa17.43■□□□□ 0.38
PDLIM2-213ENST00000448520 ZNF804BA4D1E1 1349 aa17.43■□□□□ 0.38
PDLIM2-213ENST00000448520 VAMP4O75379 141 aa17.42■□□□□ 0.38
PDLIM2-213ENST00000448520 CASP7P55210 303 aa17.42■□□□□ 0.38
PDLIM2-213ENST00000448520 DGKZQ13574 1117 aa17.42■□□□□ 0.38
PDLIM2-213ENST00000448520 TTLL5Q6EMB2 1281 aa17.42■□□□□ 0.38
PDLIM2-213ENST00000448520 CSRNP1Q96S65 589 aa17.42■□□□□ 0.38
PDLIM2-213ENST00000448520 RNF186Q9NXI6 227 aa17.42■□□□□ 0.38
PDLIM2-213ENST00000448520 ANKRD18BA2A2Z9 1011 aa17.4■□□□□ 0.38
PDLIM2-213ENST00000448520 WNT10BO00744 389 aa17.4■□□□□ 0.38
PDLIM2-213ENST00000448520 TRPA1O75762 1119 aa17.4■□□□□ 0.38
PDLIM2-213ENST00000448520 NF2P35240 595 aa17.4■□□□□ 0.38
PDLIM2-213ENST00000448520 NBPF9Q3BBW0 867 aa17.4■□□□□ 0.38
PDLIM2-213ENST00000448520 FBXW7Q969H0 707 aa17.4■□□□□ 0.38
PDLIM2-213ENST00000448520 HDAC9Q9UKV0 1011 aa17.4■□□□□ 0.38
PDLIM2-213ENST00000448520 KCNJ4P48050 445 aa17.39■□□□□ 0.37
PDLIM2-213ENST00000448520 MLLT1Q03111 559 aaPredicted RBP17.39■□□□□ 0.37
PDLIM2-213ENST00000448520 FAM161AQ3B820 660 aa17.39■□□□□ 0.37
PDLIM2-213ENST00000448520 TXNRD3Q86VQ6 643 aa17.39■□□□□ 0.37
PDLIM2-213ENST00000448520 RASAL3Q86YV0 1011 aa17.39■□□□□ 0.37
PDLIM2-213ENST00000448520 CHRNDQ07001 517 aa17.38■□□□□ 0.37
PDLIM2-213ENST00000448520 IFIT5Q13325 482 aaKnown RBP17.38■□□□□ 0.37
PDLIM2-213ENST00000448520 MXD3Q9BW11 206 aa17.38■□□□□ 0.37
PDLIM2-213ENST00000448520 GTF2IP78347 998 aa17.37■□□□□ 0.37
PDLIM2-213ENST00000448520 C15orf52Q6ZUT6 534 aaKnown RBP17.37■□□□□ 0.37
PDLIM2-213ENST00000448520 CD209Q9NNX6 404 aa17.37■□□□□ 0.37
PDLIM2-213ENST00000448520 PAPPA2Q9BXP8 1791 aa17.37■□□□□ 0.37
PDLIM2-213ENST00000448520 SPEF2Q9C093 1822 aa17.37■□□□□ 0.37
PDLIM2-213ENST00000448520 UBE2Q2LH0YL09 131 aa17.36■□□□□ 0.37
PDLIM2-213ENST00000448520 TTLL12Q14166 644 aaPredicted RBP17.36■□□□□ 0.37
PDLIM2-213ENST00000448520 APOBEC3FQ8IUX4 373 aaKnown RBP17.36■□□□□ 0.37
PDLIM2-213ENST00000448520 FOXO4P98177 505 aa17.35■□□□□ 0.37
PDLIM2-213ENST00000448520 BEND3Q5T5X7 828 aa17.35■□□□□ 0.37
PDLIM2-213ENST00000448520 PRAMEF18Q5VWM3 479 aa17.35■□□□□ 0.37
PDLIM2-213ENST00000448520 ARMC9Q7Z3E5 817 aa17.35■□□□□ 0.37
PDLIM2-213ENST00000448520 KIAA0825Q8IV33 1275 aa17.35■□□□□ 0.37
PDLIM2-213ENST00000448520 SCAF8Q9UPN6 1271 aaKnown RBP17.35■□□□□ 0.37
PDLIM2-213ENST00000448520 TM4SF4P48230 202 aa17.34■□□□□ 0.37
PDLIM2-213ENST00000448520 CCDC57Q2TAC2 916 aa17.34■□□□□ 0.37
PDLIM2-213ENST00000448520 MOB2Q70IA6 237 aa17.34■□□□□ 0.37
PDLIM2-213ENST00000448520 CHMP3Q9Y3E7 222 aa17.34■□□□□ 0.37
PDLIM2-213ENST00000448520 F6X3S4 739 aa17.33■□□□□ 0.36
PDLIM2-213ENST00000448520 KLRK1P26718 216 aa17.33■□□□□ 0.36
PDLIM2-213ENST00000448520 FKBP1AP62942 108 aaKnown RBP17.33■□□□□ 0.36
PDLIM2-213ENST00000448520 DLGAP5Q15398 846 aa17.33■□□□□ 0.36
PDLIM2-213ENST00000448520 MTMR14Q8NCE2 650 aa17.33■□□□□ 0.36
PDLIM2-213ENST00000448520 ZBED3Q96IU2 234 aaPredicted RBP17.33■□□□□ 0.36
PDLIM2-213ENST00000448520 GRM8O00222 908 aa17.32■□□□□ 0.36
PDLIM2-213ENST00000448520 TAF5LO75529 589 aa17.32■□□□□ 0.36
PDLIM2-213ENST00000448520 SASH1O94885 1247 aa17.32■□□□□ 0.36
PDLIM2-213ENST00000448520 IL1R1P14778 569 aa17.32■□□□□ 0.36
PDLIM2-213ENST00000448520 LMBR1LQ6UX01 489 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms