RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 IDI1Q13907 227 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 IFIT1BQ5T764 474 aaKnown RBP8.83□□□□□ -1
NEDD9-204ENST00000448183 C8orf58Q8NAV2 365 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 PUF60Q9UHX1 559 aaKnown RBP8.83□□□□□ -1
NEDD9-204ENST00000448183 GUCA1BQ9UMX6 200 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 GRM8O00222 908 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 FOXO3O43524 673 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 BRAPQ7Z569 592 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 TSNARE1Q96NA8 513 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 NOS1P29475 1434 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 RHOXF2BP0C7M4 288 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 RLBP1P12271 317 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 FERP16591 822 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 ATP2B3Q16720 1220 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 ATL3Q6DD88 541 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 USP37Q86T82 979 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 CEP57Q86XR8 500 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 RHOXF2Q9BQY4 288 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 ZBTB40Q9NUA8 1239 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 CHPF2Q9P2E5 772 aa8.83□□□□□ -1
NEDD9-204ENST00000448183 PARD3Q8TEW0 1356 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 IL15P40933 162 aaPredicted RBP8.82□□□□□ -1
NEDD9-204ENST00000448183 HDXQ7Z353 690 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 PLEKHM2Q8IWE5 1019 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 ZEB2O60315 1214 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 GRIPAP1Q4V328 841 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 CREB3L3Q68CJ9 461 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 CEP85Q6P2H3 762 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.82□□□□□ -1
NEDD9-204ENST00000448183 CPLX4Q7Z7G2 160 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 CNGA4Q8IV77 575 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 JARID2Q92833 1246 aaPredicted RBP8.82□□□□□ -1
NEDD9-204ENST00000448183 CAPZA3Q96KX2 299 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 PAIP2Q9BPZ3 127 aaKnown RBP8.82□□□□□ -1
NEDD9-204ENST00000448183 USP26Q9BXU7 913 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 AMOTL2Q9Y2J4 779 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 LUC7L2Q9Y383 392 aaKnown RBP8.82□□□□□ -1
NEDD9-204ENST00000448183 ASXL1Q8IXJ9 1541 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 PTPDC1A2A3K4 754 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 ATP2A1O14983 1001 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 SEC24BO95487 1268 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 KRT13P13646 458 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 EVCP57679 992 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 MXRA7P84157 204 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 MYL5Q02045 173 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 RASSF4Q9H2L5 321 aa8.82□□□□□ -1
NEDD9-204ENST00000448183 BICDL2A1A5D9 508 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 CALML3P27482 149 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 STX17P56962 302 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 PPP2R3AQ06190 1150 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 KSR2Q6VAB6 950 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 TRMT1LQ7Z2T5 733 aaKnown RBP8.81□□□□□ -1
NEDD9-204ENST00000448183 C10orf67Q8IYJ2 551 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 FAM76AQ8TAV0 307 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 RPGRQ92834 1020 aaKnown RBP8.81□□□□□ -1
NEDD9-204ENST00000448183 CCDC114Q96M63 670 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 UTP14AQ9BVJ6 771 aaKnown RBP8.81□□□□□ -1
NEDD9-204ENST00000448183 RBSNQ9H1K0 784 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 SAMM50Q9Y512 469 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 POLR3AO14802 1390 aaPredicted RBP8.81□□□□□ -1
NEDD9-204ENST00000448183 RAD50Q92878 1312 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 HLA-DOAP06340 250 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 CHMLP26374 656 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 DHX32Q7L7V1 743 aaKnown RBP8.81□□□□□ -1
NEDD9-204ENST00000448183 SREK1Q8WXA9 508 aaKnown RBP8.81□□□□□ -1
NEDD9-204ENST00000448183 TNNQ9UQP3 1299 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 SLC4A4Q9Y6R1 1079 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 CYP7A1P22680 504 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 U2AF2P26368 475 aaKnown RBP eCLIP8.81□□□□□ -14e-7■■□□□ 14.3
NEDD9-204ENST00000448183 UBXN1Q04323 297 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 ZBTB16Q05516 673 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 CFAP58Q5T655 872 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 LMBR1LQ6UX01 489 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 SMC6Q96SB8 1091 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 CABP5Q9NP86 173 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 COMMD10Q9Y6G5 202 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 C6orf229H3BNL8 230 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 TRAF1Q13077 416 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 SF3B2Q13435 895 aaKnown RBP8.81□□□□□ -1
NEDD9-204ENST00000448183 SLC9C2Q5TAH2 1124 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 RUFY3Q7L099 469 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 XAGE3Q8WTP9 111 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 GTF3C6Q969F1 213 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 BAG1Q99933 345 aaPredicted RBP8.81□□□□□ -1
NEDD9-204ENST00000448183 SELENOSQ9BQE4 189 aa8.81□□□□□ -1
NEDD9-204ENST00000448183 RRAGDQ9NQL2 400 aaPredicted RBP8.81□□□□□ -1
NEDD9-204ENST00000448183 VAMP4O75379 141 aa8.8□□□□□ -1
NEDD9-204ENST00000448183 TNNC1P63316 161 aa8.8□□□□□ -1
NEDD9-204ENST00000448183 FAM160A1Q05DH4 1040 aa8.8□□□□□ -1
NEDD9-204ENST00000448183 NEK11Q8NG66 645 aa8.8□□□□□ -1
NEDD9-204ENST00000448183 PAG1Q9NWQ8 432 aa8.8□□□□□ -1
NEDD9-204ENST00000448183 ADAMTS12P58397 1594 aa8.8□□□□□ -1
NEDD9-204ENST00000448183 APOBRQ0VD83 1088 aa8.8□□□□□ -1
NEDD9-204ENST00000448183 DNAJC21Q5F1R6 531 aaKnown RBP8.8□□□□□ -1
NEDD9-204ENST00000448183 COPS6Q7L5N1 327 aa8.8□□□□□ -1
NEDD9-204ENST00000448183 LINS1Q8NG48 757 aa8.8□□□□□ -1
NEDD9-204ENST00000448183 KIF21AQ7Z4S6 1674 aa8.8□□□□□ -1
NEDD9-204ENST00000448183 TSPY3P0CV98 308 aa8.8□□□□□ -1
NEDD9-204ENST00000448183 TSPY8P0CW00 308 aa8.8□□□□□ -1
NEDD9-204ENST00000448183 CALM1P0DP23 149 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms