RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 RPS8P62241 208 aaKnown RBP8.62□□□□□ -1.03
SYNE1-213ENST00000448038 STIM1Q13586 685 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 USPL1Q5W0Q7 1092 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 CEP57L1Q8IYX8 460 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 BMP2KQ9NSY1 1161 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-213ENST00000448038 HEG1Q9ULI3 1381 aa8.62□□□□□ -1.03
SYNE1-213ENST00000448038 PRC1O43663 620 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 FILIP1LQ4L180 1135 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 SEPT12Q8IYM1 358 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 FLAD1Q8NFF5 587 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 CEP170BQ9Y4F5 1589 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-213ENST00000448038 BRPF1P55201 1214 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-213ENST00000448038 KCNQ4P56696 695 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 CCDC178Q5BJE1 867 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 GIGYF2Q6Y7W6 1299 aaKnown RBP8.61□□□□□ -1.03
SYNE1-213ENST00000448038 DACH1Q9UI36 760 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 MSL1Q68DK7 614 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 HOMER1Q86YM7 354 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 ZNF592Q92610 1267 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 TNPO1Q92973 898 aaKnown RBP8.61□□□□□ -1.03
SYNE1-213ENST00000448038 CUL5Q93034 780 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 VEZTQ9HBM0 779 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 MED14O60244 1454 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 DPP8Q6V1X1 898 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-213ENST00000448038 CCDC12Q8WUD4 166 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-213ENST00000448038 USP26Q9BXU7 913 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 SEC24BO95487 1268 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 RBM26Q5T8P6 1007 aaKnown RBP8.61□□□□□ -1.03
SYNE1-213ENST00000448038 CCDC129Q6ZRS4 1044 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 CHST3Q7LGC8 479 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 NDUFB9Q9Y6M9 179 aa8.61□□□□□ -1.03
SYNE1-213ENST00000448038 SPATA31D1Q6ZQQ2 1576 aa8.6□□□□□ -1.03
SYNE1-213ENST00000448038 RTN1Q16799 776 aa8.6□□□□□ -1.03
SYNE1-213ENST00000448038 TFIP11Q9UBB9 837 aaKnown RBP8.6□□□□□ -1.03
SYNE1-213ENST00000448038 KBTBD3Q8NAB2 608 aa8.6□□□□□ -1.03
SYNE1-213ENST00000448038 FRMPD1Q5SYB0 1578 aa8.6□□□□□ -1.03
SYNE1-213ENST00000448038 OFD1O75665 1012 aa8.6□□□□□ -1.03
SYNE1-213ENST00000448038 CCAR2Q8N163 923 aaKnown RBP8.6□□□□□ -1.03
SYNE1-213ENST00000448038 APPBP2Q92624 585 aa8.6□□□□□ -1.03
SYNE1-213ENST00000448038 CAMK4Q16566 473 aa8.6□□□□□ -1.03
SYNE1-213ENST00000448038 FAM227BQ96M60 508 aa8.6□□□□□ -1.03
SYNE1-213ENST00000448038 AFF2P51816 1311 aa8.6□□□□□ -1.03
SYNE1-213ENST00000448038 PNPLA6Q8IY17 1366 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 NCAPD2Q15021 1401 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 SERPINC1P01008 464 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 ALDH1B1P30837 517 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 MAP3K11Q16584 847 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 WDR78Q5VTH9 848 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 WDR66Q8TBY9 1149 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 PTPRUQ92729 1446 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 ZAP70P43403 619 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 DHX32Q7L7V1 743 aaKnown RBP8.59□□□□□ -1.03
SYNE1-213ENST00000448038 GDPD2Q9HCC8 539 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 TNIP1Q15025 636 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 PPP4R3BQ5MIZ7 849 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 SPATA5Q8NB90 893 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 SNX21Q969T3 373 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 ARMT1Q9H993 441 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 AK2P54819 239 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 TEX11Q8IYF3 940 aa8.59□□□□□ -1.03
SYNE1-213ENST00000448038 WDHD1O75717 1129 aaPredicted RBP8.59□□□□□ -1.04
SYNE1-213ENST00000448038 ATP5JP18859 108 aa8.59□□□□□ -1.04
SYNE1-213ENST00000448038 PDE6BP35913 854 aa8.59□□□□□ -1.04
SYNE1-213ENST00000448038 DIP2AQ14689 1571 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 GPAA1O43292 621 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 GNAQP50148 359 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 LRRC24Q50LG9 513 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 EAF2Q96CJ1 260 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-213ENST00000448038 ALG1Q9BT22 464 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 GREM2Q9H772 168 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 NRXN1Q9ULB1 1477 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 RUFY3Q7L099 469 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 VSIG10Q8N0Z9 540 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 NLGN1Q8N2Q7 840 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 RAB34Q9BZG1 259 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 CCDC39Q9UFE4 941 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 PALLDQ8WX93 1383 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 KIAA1210Q9ULL0 1709 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 SYCE3A1L190 88 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 SGSM2O43147 1006 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 APOBRQ0VD83 1088 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 MPNDQ8N594 471 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 CERKQ8TCT0 537 aa8.58□□□□□ -1.04
SYNE1-213ENST00000448038 DHX8Q14562 1220 aaKnown RBP8.58□□□□□ -1.04
SYNE1-213ENST00000448038 NAP1L1P55209 391 aaKnown RBP8.57□□□□□ -1.04
SYNE1-213ENST00000448038 TMEM266Q2M3C6 531 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 TTC6Q86TZ1 520 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 LARGE2Q8N3Y3 721 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 ZSCAN16Q9H4T2 348 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-213ENST00000448038 EHMT1Q9H9B1 1298 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 VWDEQ8N2E2 1590 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 IBTKQ9P2D0 1353 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-213ENST00000448038 ZSCAN22P10073 491 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-213ENST00000448038 RBM25P49756 843 aaKnown RBP8.57□□□□□ -1.04
SYNE1-213ENST00000448038 SPC24Q8NBT2 197 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 EDC3Q96F86 508 aaKnown RBP8.57□□□□□ -1.04
SYNE1-213ENST00000448038 COPRSQ9NQ92 184 aa8.57□□□□□ -1.04
SYNE1-213ENST00000448038 SAP30BPQ9UHR5 308 aaKnown RBP8.57□□□□□ -1.04
SYNE1-213ENST00000448038 BAG4O95429 457 aaKnown RBP8.57□□□□□ -1.04
SYNE1-213ENST00000448038 PAXIP1Q6ZW49 1069 aaPredicted RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms