RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 RNF216Q9NWF9 866 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-204ENST00000446625 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-204ENST00000446625 CHPF2Q9P2E5 772 aa10.17□□□□□ -0.78
LIMCH1-204ENST00000446625 ANGEL1Q9UNK9 670 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-204ENST00000446625 FZD1Q9UP38 647 aa10.17□□□□□ -0.78
LIMCH1-204ENST00000446625 MAPK8IP3Q9UPT6 1336 aa10.16□□□□□ -0.78
LIMCH1-204ENST00000446625 MANSC4A6NHS7 340 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-204ENST00000446625 WTIPA6NIX2 430 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-204ENST00000446625 SASH1O94885 1247 aa10.16□□□□□ -0.78
LIMCH1-204ENST00000446625 INHBEP58166 350 aa10.16□□□□□ -0.78
LIMCH1-204ENST00000446625 CAP1Q01518 475 aa10.16□□□□□ -0.78
LIMCH1-204ENST00000446625 DACT2Q5SW24 774 aa10.16□□□□□ -0.78
LIMCH1-204ENST00000446625 ERO1AQ96HE7 468 aa10.16□□□□□ -0.78
LIMCH1-204ENST00000446625 BABAM1Q9NWV8 329 aa10.16□□□□□ -0.78
LIMCH1-204ENST00000446625 SPEF2Q9C093 1822 aa10.16□□□□□ -0.78
LIMCH1-204ENST00000446625 RANBP2P49792 3224 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-204ENST00000446625 XDHP47989 1333 aa10.15□□□□□ -0.78
LIMCH1-204ENST00000446625 H0YGN5 161 aa10.15□□□□□ -0.78
LIMCH1-204ENST00000446625 DLL1O00548 723 aa10.15□□□□□ -0.78
LIMCH1-204ENST00000446625 TRIM28Q13263 835 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-204ENST00000446625 OGFOD1Q8N543 542 aa10.15□□□□□ -0.78
LIMCH1-204ENST00000446625 SLC10A4Q96EP9 437 aa10.15□□□□□ -0.78
LIMCH1-204ENST00000446625 CCDC85AQ96PX6 553 aaPredicted RBP10.15□□□□□ -0.78
LIMCH1-204ENST00000446625 TMEM106CQ9BVX2 250 aa10.15□□□□□ -0.78
LIMCH1-204ENST00000446625 EFCC1Q9HA90 598 aa10.15□□□□□ -0.78
LIMCH1-204ENST00000446625 A0A0C4DFX4 3053 aa10.15□□□□□ -0.79
LIMCH1-204ENST00000446625 ZBTB48P10074 688 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-204ENST00000446625 ATP2B4P23634 1241 aa10.14□□□□□ -0.79
LIMCH1-204ENST00000446625 RIPK4P57078 832 aa10.14□□□□□ -0.79
LIMCH1-204ENST00000446625 CRHR2Q13324 411 aa10.14□□□□□ -0.79
LIMCH1-204ENST00000446625 APOBEC3FQ8IUX4 373 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-204ENST00000446625 FBXW7Q969H0 707 aa10.14□□□□□ -0.79
LIMCH1-204ENST00000446625 OTUD5Q96G74 571 aa10.14□□□□□ -0.79
LIMCH1-204ENST00000446625 WNK4Q96J92 1243 aa10.14□□□□□ -0.79
LIMCH1-204ENST00000446625 ZNF333Q96JL9 665 aa10.14□□□□□ -0.79
LIMCH1-204ENST00000446625 CLMNQ96JQ2 1002 aa10.14□□□□□ -0.79
LIMCH1-204ENST00000446625 ECM29Q5VYK3 1845 aa10.13□□□□□ -0.79
LIMCH1-204ENST00000446625 SP3Q02447 781 aa10.13□□□□□ -0.79
LIMCH1-204ENST00000446625 CCDC152Q4G0S7 254 aa10.13□□□□□ -0.79
LIMCH1-204ENST00000446625 HDGFL1Q5TGJ6 251 aa10.13□□□□□ -0.79
LIMCH1-204ENST00000446625 STRIP1Q5VSL9 837 aa10.13□□□□□ -0.79
LIMCH1-204ENST00000446625 ZBTB38Q8NAP3 1195 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-204ENST00000446625 JARID2Q92833 1246 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-204ENST00000446625 ZBED3Q96IU2 234 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-204ENST00000446625 MYH3P11055 1940 aa10.13□□□□□ -0.79
LIMCH1-204ENST00000446625 MED23Q9ULK4 1368 aa10.13□□□□□ -0.79
LIMCH1-204ENST00000446625 MYO3BQ8WXR4 1341 aa10.12□□□□□ -0.79
LIMCH1-204ENST00000446625 KCNA4P22459 653 aa10.12□□□□□ -0.79
LIMCH1-204ENST00000446625 MAP3K11Q16584 847 aa10.12□□□□□ -0.79
LIMCH1-204ENST00000446625 CHRDL2Q6WN34 429 aa10.12□□□□□ -0.79
LIMCH1-204ENST00000446625 KIAA0825Q8IV33 1275 aa10.12□□□□□ -0.79
LIMCH1-204ENST00000446625 ANKRD18AQ8IVF6 992 aa10.12□□□□□ -0.79
LIMCH1-204ENST00000446625 CCER1Q8TC90 406 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-204ENST00000446625 PTPN18Q99952 460 aa10.12□□□□□ -0.79
LIMCH1-204ENST00000446625 DEFB129Q9H1M3 183 aa10.12□□□□□ -0.79
LIMCH1-204ENST00000446625 PNNQ9H307 717 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-204ENST00000446625 DBF4Q9UBU7 674 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-204ENST00000446625 SSC5DA1L4H1 1573 aa10.12□□□□□ -0.79
LIMCH1-204ENST00000446625 CHL1O00533 1208 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 PDE8AO60658 829 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 MYCP01106 439 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 HSP90B1P14625 803 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 GJA5P36382 358 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 TMPOP42166 694 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 SLC4A8Q2Y0W8 1093 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 SLC9C1Q4G0N8 1177 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 OTUD7BQ6GQQ9 843 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 TXNRD3Q86VQ6 643 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 SLC17A8Q8NDX2 589 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 HYPKQ9NX55 129 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 PTCH2Q9Y6C5 1203 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 OTOFQ9HC10 1997 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 ZSWIM8A7E2V4 1837 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 COL6A3P12111 3177 aa10.11□□□□□ -0.79
LIMCH1-204ENST00000446625 COL1A1P02452 1464 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-204ENST00000446625 PPP1R12BO60237 982 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-204ENST00000446625 NPM3O75607 178 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-204ENST00000446625 PCCAP05165 728 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-204ENST00000446625 MMP14P50281 582 aa10.1□□□□□ -0.79
LIMCH1-204ENST00000446625 TTLL5Q6EMB2 1281 aa10.1□□□□□ -0.79
LIMCH1-204ENST00000446625 RIC3Q7Z5B4 369 aa10.1□□□□□ -0.79
LIMCH1-204ENST00000446625 NBPF11Q86T75 865 aa10.1□□□□□ -0.79
LIMCH1-204ENST00000446625 COA1Q9GZY4 146 aa10.1□□□□□ -0.79
LIMCH1-204ENST00000446625 RBM27Q9P2N5 1060 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-204ENST00000446625 MINPP1Q9UNW1 487 aa10.1□□□□□ -0.79
LIMCH1-204ENST00000446625 LAS1LQ9Y4W2 734 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-204ENST00000446625 TESPA1A2RU30 521 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-204ENST00000446625 HOXB7P09629 217 aa10.09□□□□□ -0.79
LIMCH1-204ENST00000446625 KLRK1P26718 216 aa10.09□□□□□ -0.79
LIMCH1-204ENST00000446625 CCT4P50991 539 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-204ENST00000446625 LMOD3Q0VAK6 560 aa10.09□□□□□ -0.79
LIMCH1-204ENST00000446625 MYD88Q99836 296 aa10.09□□□□□ -0.79
LIMCH1-204ENST00000446625 PCDHAC2Q9Y5I4 1007 aa10.09□□□□□ -0.79
LIMCH1-204ENST00000446625 UNCXA6NJT0 531 aa10.08□□□□□ -0.8
LIMCH1-204ENST00000446625 USP2O75604 605 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-204ENST00000446625 GTF2IP78347 998 aa10.08□□□□□ -0.8
LIMCH1-204ENST00000446625 GOLGA2Q08379 1002 aa10.08□□□□□ -0.8
LIMCH1-204ENST00000446625 DLGAP5Q15398 846 aa10.08□□□□□ -0.8
LIMCH1-204ENST00000446625 NEUROD2Q15784 382 aa10.08□□□□□ -0.8
LIMCH1-204ENST00000446625 NBPF12Q5TAG4 269 aaPredicted RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms