RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 USP17L7P0C7H9 530 aa8.28□□□□□ -1.08
MCF2-206ENST00000446225 IRS1P35568 1242 aa8.28□□□□□ -1.08
MCF2-206ENST00000446225 TBX4P57082 545 aa8.28□□□□□ -1.08
MCF2-206ENST00000446225 DGKZQ13574 1117 aa8.28□□□□□ -1.08
MCF2-206ENST00000446225 INTS6LQ5JSJ4 861 aaKnown RBP8.28□□□□□ -1.08
MCF2-206ENST00000446225 EPS8L3Q8TE67 593 aaKnown RBP8.28□□□□□ -1.08
MCF2-206ENST00000446225 APPBP2Q92624 585 aa8.28□□□□□ -1.08
MCF2-206ENST00000446225 KANSL2Q9H9L4 492 aa8.28□□□□□ -1.08
MCF2-206ENST00000446225 EFCAB6Q5THR3 1501 aa8.28□□□□□ -1.08
MCF2-206ENST00000446225 CFAP65Q6ZU64 1925 aaKnown RBP8.28□□□□□ -1.08
MCF2-206ENST00000446225 IQGAP3Q86VI3 1631 aa8.27□□□□□ -1.09
MCF2-206ENST00000446225 A6NHS1 94 aa8.27□□□□□ -1.09
MCF2-206ENST00000446225 C11orf91Q3C1V1 193 aa8.27□□□□□ -1.09
MCF2-206ENST00000446225 ODR4Q5SWX8 454 aa8.27□□□□□ -1.09
MCF2-206ENST00000446225 GPR152Q8TDT2 470 aa8.27□□□□□ -1.09
MCF2-206ENST00000446225 HNRNPLLQ8WVV9 542 aaKnown RBP8.27□□□□□ -1.09
MCF2-206ENST00000446225 GGNBP2Q9H3C7 697 aa8.27□□□□□ -1.09
MCF2-206ENST00000446225 HPS5Q9UPZ3 1129 aa8.27□□□□□ -1.09
MCF2-206ENST00000446225 SPATA31D1Q6ZQQ2 1576 aa8.27□□□□□ -1.09
MCF2-206ENST00000446225 NOS1P29475 1434 aa8.27□□□□□ -1.09
MCF2-206ENST00000446225 CCDC136Q96JN2 1154 aa8.27□□□□□ -1.09
MCF2-206ENST00000446225 TYW1Q9NV66 732 aaKnown RBP8.27□□□□□ -1.09
MCF2-206ENST00000446225 TET3O43151 1660 aa8.26□□□□□ -1.09
MCF2-206ENST00000446225 POTEIP0CG38 1075 aa8.26□□□□□ -1.09
MCF2-206ENST00000446225 SMTNP53814 917 aa8.26□□□□□ -1.09
MCF2-206ENST00000446225 GYS2P54840 703 aa8.26□□□□□ -1.09
MCF2-206ENST00000446225 ARSHQ5FYA8 562 aa8.26□□□□□ -1.09
MCF2-206ENST00000446225 LRP10Q7Z4F1 713 aa8.26□□□□□ -1.09
MCF2-206ENST00000446225 THEMISQ8N1K5 641 aaPredicted RBP8.26□□□□□ -1.09
MCF2-206ENST00000446225 PRPF38AQ8NAV1 312 aaKnown RBP8.26□□□□□ -1.09
MCF2-206ENST00000446225 CCDC74AQ96AQ1 378 aa8.26□□□□□ -1.09
MCF2-206ENST00000446225 IFT43Q96FT9 208 aa8.26□□□□□ -1.09
MCF2-206ENST00000446225 KLK14Q9P0G3 267 aa8.26□□□□□ -1.09
MCF2-206ENST00000446225 R3HCC1Q9Y3T6 440 aaKnown RBP8.26□□□□□ -1.09
MCF2-206ENST00000446225 A2ML1A8K2U0 1454 aa8.26□□□□□ -1.09
MCF2-206ENST00000446225 RPRD2Q5VT52 1461 aaKnown RBP8.26□□□□□ -1.09
MCF2-206ENST00000446225 ERBB3P21860 1342 aa8.25□□□□□ -1.09
MCF2-206ENST00000446225 PREX1Q8TCU6 1659 aa8.25□□□□□ -1.09
MCF2-206ENST00000446225 EIF3JO75822 258 aaKnown RBP8.25□□□□□ -1.09
MCF2-206ENST00000446225 NOS2P35228 1153 aa8.25□□□□□ -1.09
MCF2-206ENST00000446225 CBLBQ13191 982 aa8.25□□□□□ -1.09
MCF2-206ENST00000446225 MTFR1Q15390 333 aa8.25□□□□□ -1.09
MCF2-206ENST00000446225 STRIP2Q9ULQ0 834 aa8.25□□□□□ -1.09
MCF2-206ENST00000446225 NLRP1Q9C000 1473 aa8.25□□□□□ -1.09
MCF2-206ENST00000446225 USPL1Q5W0Q7 1092 aa8.25□□□□□ -1.09
MCF2-206ENST00000446225 SPOCK3Q9BQ16 436 aa8.25□□□□□ -1.09
MCF2-206ENST00000446225 GINM1Q9NU53 330 aa8.25□□□□□ -1.09
MCF2-206ENST00000446225 ADAMTS1Q9UHI8 967 aa8.25□□□□□ -1.09
MCF2-206ENST00000446225 PTPRTO14522 1441 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 E9PCH4 1651 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 SYNMO15061 1565 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 ESYT3A0FGR9 886 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 COPS2P61201 443 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 RTN1Q16799 776 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 POTEAQ6S8J7 498 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 KIAA0907Q7Z7F0 614 aaPredicted RBP8.24□□□□□ -1.09
MCF2-206ENST00000446225 FERMT3Q86UX7 667 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 HOMER1Q86YM7 354 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 ALDH16A1Q8IZ83 802 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 IER2Q9BTL4 223 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 PCGF6Q9BYE7 350 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 SRCIN1Q9C0H9 1055 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 PLA2R1Q13018 1463 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 MYO3AQ8NEV4 1616 aa8.24□□□□□ -1.09
MCF2-206ENST00000446225 CEP170BQ9Y4F5 1589 aaPredicted RBP8.24□□□□□ -1.09
MCF2-206ENST00000446225 ESCO1Q5FWF5 840 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 SH3PXD2AQ5TCZ1 1133 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 LILRB2Q8N423 598 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 DNAJC7Q99615 494 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 USP3Q9Y6I4 520 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 SERTM1A2A2V5 107 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 PRC1O43663 620 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 TLL1O43897 1013 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 ZPR1O75312 459 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 GNRH1P01148 92 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 NXPE4Q6UWF7 544 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 VASH1Q7L8A9 365 aaPredicted RBP8.23□□□□□ -1.09
MCF2-206ENST00000446225 TREML1Q86YW5 311 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 CPLX3Q8WVH0 158 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 ANAPC16Q96DE5 110 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 SGSM3Q96HU1 749 aa8.23□□□□□ -1.09
MCF2-206ENST00000446225 TSR3Q9UJK0 312 aaKnown RBP8.23□□□□□ -1.09
MCF2-206ENST00000446225 TTF2Q9UNY4 1162 aaKnown RBP8.23□□□□□ -1.09
MCF2-206ENST00000446225 UGGT1Q9NYU2 1555 aa8.22□□□□□ -1.09
MCF2-206ENST00000446225 F6X3S4 739 aa8.22□□□□□ -1.09
MCF2-206ENST00000446225 EML1O00423 815 aa8.22□□□□□ -1.09
MCF2-206ENST00000446225 LTKP29376 864 aa8.22□□□□□ -1.09
MCF2-206ENST00000446225 SOX9P48436 509 aa8.22□□□□□ -1.09
MCF2-206ENST00000446225 ANKLE2Q86XL3 938 aa8.22□□□□□ -1.09
MCF2-206ENST00000446225 ANKK1Q8NFD2 765 aa8.22□□□□□ -1.09
MCF2-206ENST00000446225 CEP89Q96ST8 783 aa8.22□□□□□ -1.09
MCF2-206ENST00000446225 NOC4LQ9BVI4 516 aaKnown RBP8.22□□□□□ -1.09
MCF2-206ENST00000446225 TMPRSS4Q9NRS4 437 aa8.22□□□□□ -1.09
MCF2-206ENST00000446225 RAB6BQ9NRW1 208 aa8.22□□□□□ -1.09
MCF2-206ENST00000446225 ZNF232Q9UNY5 417 aa8.22□□□□□ -1.09
MCF2-206ENST00000446225 SOWAHBA6NEL2 793 aa8.21□□□□□ -1.09
MCF2-206ENST00000446225 ADH1BP00325 375 aa8.21□□□□□ -1.09
MCF2-206ENST00000446225 RPLP1P05386 114 aaKnown RBP8.21□□□□□ -1.09
MCF2-206ENST00000446225 BCAMP50895 628 aa8.21□□□□□ -1.09
MCF2-206ENST00000446225 HIRAP54198 1017 aaPredicted RBP8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms