RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 CPDO75976 1380 aa13.25□□□□□ -0.29
USP4-205ENST00000431357 E7EWF7 191 aa13.25□□□□□ -0.29
USP4-205ENST00000431357 GOLGA6L19H0YKK7 550 aa13.25□□□□□ -0.29
USP4-205ENST00000431357 CTDNEP1O95476 244 aa13.25□□□□□ -0.29
USP4-205ENST00000431357 HSPD1P10809 573 aaKnown RBP13.25□□□□□ -0.29
USP4-205ENST00000431357 STX1AQ16623 288 aa13.25□□□□□ -0.29
USP4-205ENST00000431357 CCDC73Q6ZRK6 1079 aa13.25□□□□□ -0.29
USP4-205ENST00000431357 CCAR1Q8IX12 1150 aaKnown RBP13.25□□□□□ -0.29
USP4-205ENST00000431357 DNAJC25Q9H1X3 360 aa13.25□□□□□ -0.29
USP4-205ENST00000431357 CTNNA3Q9UI47 895 aa13.25□□□□□ -0.29
USP4-205ENST00000431357 FBXO3Q9UK99 471 aa13.25□□□□□ -0.29
USP4-205ENST00000431357 SALL1Q9NSC2 1324 aa13.24□□□□□ -0.29
USP4-205ENST00000431357 TNS3Q68CZ2 1445 aa13.24□□□□□ -0.29
USP4-205ENST00000431357 NBPF26B4DH59 902 aa13.24□□□□□ -0.29
USP4-205ENST00000431357 TRHP20396 242 aaPredicted RBP13.24□□□□□ -0.29
USP4-205ENST00000431357 APOBRQ0VD83 1088 aa13.24□□□□□ -0.29
USP4-205ENST00000431357 NBPF14Q5TI25 921 aa13.24□□□□□ -0.29
USP4-205ENST00000431357 NBPF10Q6P3W6 841 aaKnown RBP13.24□□□□□ -0.29
USP4-205ENST00000431357 NBPF15Q8N660 670 aa13.24□□□□□ -0.29
USP4-205ENST00000431357 LRRC2Q9BYS8 371 aa13.24□□□□□ -0.29
USP4-205ENST00000431357 ERVV-2B6SEH9 535 aa13.24□□□□□ -0.29
USP4-205ENST00000431357 NEMFO60524 1076 aa13.24□□□□□ -0.29
USP4-205ENST00000431357 CHGBP05060 677 aa13.24□□□□□ -0.29
USP4-205ENST00000431357 EVCP57679 992 aa13.24□□□□□ -0.29
USP4-205ENST00000431357 TIMM10P62072 90 aa13.24□□□□□ -0.29
USP4-205ENST00000431357 CCDC94Q9BW85 323 aaPredicted RBP13.24□□□□□ -0.29
USP4-205ENST00000431357 LAMA4Q16363 1823 aa13.23□□□□□ -0.29
USP4-205ENST00000431357 MAST3O60307 1309 aa13.23□□□□□ -0.29
USP4-205ENST00000431357 KINO60870 393 aaKnown RBP13.23□□□□□ -0.29
USP4-205ENST00000431357 ZFYP08048 801 aaPredicted RBP13.23□□□□□ -0.29
USP4-205ENST00000431357 PDIA3P30101 505 aaKnown RBP13.23□□□□□ -0.29
USP4-205ENST00000431357 IQCB1Q15051 598 aa13.23□□□□□ -0.29
USP4-205ENST00000431357 ZSCAN25Q6NSZ9 544 aa13.23□□□□□ -0.29
USP4-205ENST00000431357 MRFAP1L1Q96HT8 127 aa13.23□□□□□ -0.29
USP4-205ENST00000431357 ANO10Q9NW15 660 aa13.23□□□□□ -0.29
USP4-205ENST00000431357 PCDH11XQ9BZA7 1347 aa13.23□□□□□ -0.29
USP4-205ENST00000431357 PCDH11YQ9BZA8 1340 aa13.23□□□□□ -0.29
USP4-205ENST00000431357 MYH15Q9Y2K3 1946 aa13.23□□□□□ -0.29
USP4-205ENST00000431357 A0A1B0GUL7 405 aa13.22□□□□□ -0.29
USP4-205ENST00000431357 FAM160A1Q05DH4 1040 aa13.22□□□□□ -0.29
USP4-205ENST00000431357 CEP126Q9P2H0 1117 aa13.22□□□□□ -0.29
USP4-205ENST00000431357 CLIP2Q9UDT6 1046 aa13.22□□□□□ -0.29
USP4-205ENST00000431357 AKAP2Q9Y2D5 859 aa13.22□□□□□ -0.29
USP4-205ENST00000431357 NUP188Q5SRE5 1749 aa13.22□□□□□ -0.29
USP4-205ENST00000431357 CHRNA2Q15822 529 aa13.22□□□□□ -0.29
USP4-205ENST00000431357 CCDC158Q5M9N0 1113 aa13.22□□□□□ -0.29
USP4-205ENST00000431357 TTLL7Q6ZT98 887 aa13.22□□□□□ -0.29
USP4-205ENST00000431357 RGS22Q8NE09 1264 aa13.22□□□□□ -0.29
USP4-205ENST00000431357 ENGASEQ8NFI3 743 aa13.22□□□□□ -0.29
USP4-205ENST00000431357 USP28Q96RU2 1077 aa13.22□□□□□ -0.29
USP4-205ENST00000431357 ABCC12Q96J65 1359 aa13.21□□□□□ -0.29
USP4-205ENST00000431357 RIOK3O14730 519 aaKnown RBP13.21□□□□□ -0.29
USP4-205ENST00000431357 DHX16O60231 1041 aaKnown RBP13.21□□□□□ -0.29
USP4-205ENST00000431357 CCT2P78371 535 aaKnown RBP13.21□□□□□ -0.29
USP4-205ENST00000431357 CEBPZQ03701 1054 aaKnown RBP13.21□□□□□ -0.29
USP4-205ENST00000431357 SNW1Q13573 536 aaKnown RBP13.21□□□□□ -0.29
USP4-205ENST00000431357 ZNF710Q8N1W2 664 aa13.21□□□□□ -0.29
USP4-205ENST00000431357 CCDC9Q9Y3X0 531 aaKnown RBP13.21□□□□□ -0.29
USP4-205ENST00000431357 TJP1Q07157 1748 aa13.21□□□□□ -0.29
USP4-205ENST00000431357 SPATA31A3Q5VYP0 1347 aa13.21□□□□□ -0.29
USP4-205ENST00000431357 A0A1W2PQ27 194 aa13.21□□□□□ -0.3
USP4-205ENST00000431357 A0A1W2PQ64 194 aa13.21□□□□□ -0.3
USP4-205ENST00000431357 A0A1W2PQD8 194 aa13.21□□□□□ -0.3
USP4-205ENST00000431357 CTIFO43310 598 aaKnown RBP13.21□□□□□ -0.3
USP4-205ENST00000431357 IMMTQ16891 758 aaKnown RBP13.21□□□□□ -0.3
USP4-205ENST00000431357 LRRC24Q50LG9 513 aa13.21□□□□□ -0.3
USP4-205ENST00000431357 ZCRB1Q8TBF4 217 aaKnown RBP13.21□□□□□ -0.3
USP4-205ENST00000431357 NAT10Q9H0A0 1025 aaKnown RBP13.21□□□□□ -0.3
USP4-205ENST00000431357 BCL2L12Q9HB09 334 aa13.21□□□□□ -0.3
USP4-205ENST00000431357 RTEL1Q9NZ71 1219 aa13.21□□□□□ -0.3
USP4-205ENST00000431357 CARMIL3Q8ND23 1372 aa13.2□□□□□ -0.3
USP4-205ENST00000431357 UBR2Q8IWV8 1755 aa13.2□□□□□ -0.3
USP4-205ENST00000431357 BECN2A8MW95 431 aa13.2□□□□□ -0.3
USP4-205ENST00000431357 GTF2E1P29083 439 aaPredicted RBP13.2□□□□□ -0.3
USP4-205ENST00000431357 NKX1-1Q15270 411 aaPredicted RBP13.2□□□□□ -0.3
USP4-205ENST00000431357 SYCP1Q15431 976 aa13.2□□□□□ -0.3
USP4-205ENST00000431357 CADPS2Q86UW7 1296 aa13.2□□□□□ -0.3
USP4-205ENST00000431357 CABLES1Q8TDN4 633 aa13.2□□□□□ -0.3
USP4-205ENST00000431357 GOLPH3LQ9H4A5 285 aa13.2□□□□□ -0.3
USP4-205ENST00000431357 NRBP1Q9UHY1 535 aa13.2□□□□□ -0.3
USP4-205ENST00000431357 PAXBP1Q9Y5B6 917 aa13.2□□□□□ -0.3
USP4-205ENST00000431357 SMTNL1A8MU46 457 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 M0R2C6 588 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 ME1P48163 572 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 CCDC57Q2TAC2 916 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 TTC39AQ5SRH9 613 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 ADALQ6DHV7 355 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 CEP57L1Q8IYX8 460 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 FSIP1Q8NA03 581 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 MRPS27Q92552 414 aaKnown RBP13.19□□□□□ -0.3
USP4-205ENST00000431357 ISCA1Q9BUE6 129 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 WDR19Q8NEZ3 1342 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 A1BGP04217 495 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 LRMPQ12912 555 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 TRIM28Q13263 835 aaKnown RBP13.19□□□□□ -0.3
USP4-205ENST00000431357 GORABQ5T7V8 394 aa13.19□□□□□ -0.3
USP4-205ENST00000431357 C11orf57Q6ZUT1 292 aaPredicted RBP13.19□□□□□ -0.3
USP4-205ENST00000431357 NCOA5Q9HCD5 579 aaKnown RBP13.19□□□□□ -0.3
USP4-205ENST00000431357 KCPQ6ZWJ8 1503 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 YEATS4O95619 227 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms