RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 MAPK8P45983 427 aa10.06□□□□□ -0.8
CCDC88A-206ENST00000430086 MSL1Q68DK7 614 aa10.06□□□□□ -0.8
CCDC88A-206ENST00000430086 POP1Q99575 1024 aaKnown RBP10.06□□□□□ -0.8
CCDC88A-206ENST00000430086 NPHS2Q9NP85 383 aa10.06□□□□□ -0.8
CCDC88A-206ENST00000430086 TRIM33Q9UPN9 1127 aa10.06□□□□□ -0.8
CCDC88A-206ENST00000430086 A0A1W2PP55 124 aa10.05□□□□□ -0.8
CCDC88A-206ENST00000430086 PDE2AO00408 941 aaPredicted RBP10.05□□□□□ -0.8
CCDC88A-206ENST00000430086 FBF1Q8TES7 1133 aa10.05□□□□□ -0.8
CCDC88A-206ENST00000430086 NXPE3Q969Y0 559 aa10.05□□□□□ -0.8
CCDC88A-206ENST00000430086 PLVAPQ9BX97 442 aa10.05□□□□□ -0.8
CCDC88A-206ENST00000430086 BHLHE41Q9C0J9 482 aaPredicted RBP10.05□□□□□ -0.8
CCDC88A-206ENST00000430086 NOP53Q9NZM5 478 aaKnown RBP10.05□□□□□ -0.8
CCDC88A-206ENST00000430086 SPDYE3A6NKU9 549 aa10.04□□□□□ -0.8
CCDC88A-206ENST00000430086 TRPA1O75762 1119 aa10.04□□□□□ -0.8
CCDC88A-206ENST00000430086 BAG6P46379 1132 aa10.04□□□□□ -0.8
CCDC88A-206ENST00000430086 ALG1LQ6GMV1 187 aa10.04□□□□□ -0.8
CCDC88A-206ENST00000430086 GDF6Q6KF10 455 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-206ENST00000430086 WFDC8Q8IUA0 241 aa10.04□□□□□ -0.8
CCDC88A-206ENST00000430086 ADAM19Q9H013 955 aa10.04□□□□□ -0.8
CCDC88A-206ENST00000430086 PTPRAP18433 802 aa10.03□□□□□ -0.8
CCDC88A-206ENST00000430086 MFAP1P55081 439 aaKnown RBP10.03□□□□□ -0.8
CCDC88A-206ENST00000430086 IL22RA1Q8N6P7 574 aa10.03□□□□□ -0.8
CCDC88A-206ENST00000430086 HHIPQ96QV1 700 aa10.03□□□□□ -0.8
CCDC88A-206ENST00000430086 SUV39H2Q9H5I1 410 aa10.03□□□□□ -0.8
CCDC88A-206ENST00000430086 FGD1P98174 961 aa10.02□□□□□ -0.81
CCDC88A-206ENST00000430086 ATP2B2Q01814 1243 aa10.02□□□□□ -0.81
CCDC88A-206ENST00000430086 EAPPQ56P03 285 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-206ENST00000430086 ADAMTSL4Q6UY14 1074 aa10.02□□□□□ -0.81
CCDC88A-206ENST00000430086 CCNJLQ8IV13 435 aa10.02□□□□□ -0.81
CCDC88A-206ENST00000430086 EPS8L3Q8TE67 593 aaKnown RBP10.02□□□□□ -0.81
CCDC88A-206ENST00000430086 TCF12Q99081 682 aa10.02□□□□□ -0.81
CCDC88A-206ENST00000430086 MUC3BQ9H195 1237 aa10.02□□□□□ -0.81
CCDC88A-206ENST00000430086 LDHBP07195 334 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-206ENST00000430086 CDC27P30260 824 aa10.01□□□□□ -0.81
CCDC88A-206ENST00000430086 IRS1P35568 1242 aa10.01□□□□□ -0.81
CCDC88A-206ENST00000430086 KCNMA1Q12791 1236 aa10.01□□□□□ -0.81
CCDC88A-206ENST00000430086 TRAPPC3LQ5T215 181 aa10.01□□□□□ -0.81
CCDC88A-206ENST00000430086 ALYREFQ86V81 257 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-206ENST00000430086 DMRTC2Q8IXT2 367 aaPredicted RBP10.01□□□□□ -0.81
CCDC88A-206ENST00000430086 DTWD1Q8N5C7 304 aa10.01□□□□□ -0.81
CCDC88A-206ENST00000430086 LACRTQ9GZZ8 138 aa10.01□□□□□ -0.81
CCDC88A-206ENST00000430086 LIN7BQ9HAP6 207 aa10.01□□□□□ -0.81
CCDC88A-206ENST00000430086 NLRP2Q9NX02 1062 aa10.01□□□□□ -0.81
CCDC88A-206ENST00000430086 COL8A1P27658 744 aa10□□□□□ -0.81
CCDC88A-206ENST00000430086 FBXO33Q7Z6M2 555 aa10□□□□□ -0.81
CCDC88A-206ENST00000430086 EHD4Q9H223 541 aa10□□□□□ -0.81
CCDC88A-206ENST00000430086 WWC3Q9ULE0 1092 aa10□□□□□ -0.81
CCDC88A-206ENST00000430086 PPME1Q9Y570 386 aa10□□□□□ -0.81
CCDC88A-206ENST00000430086 A0A0A0MRY4 1105 aa9.99□□□□□ -0.81
CCDC88A-206ENST00000430086 GADD45BO75293 160 aaPredicted RBP9.99□□□□□ -0.81
CCDC88A-206ENST00000430086 PRPF40BQ6NWY9 871 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-206ENST00000430086 BSNDQ8WZ55 320 aa9.99□□□□□ -0.81
CCDC88A-206ENST00000430086 SETDB2Q96T68 719 aa9.99□□□□□ -0.81
CCDC88A-206ENST00000430086 SRA1Q9HD15 236 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-206ENST00000430086 SOX13Q9UN79 622 aa9.99□□□□□ -0.81
CCDC88A-206ENST00000430086 TRAK1Q9UPV9 953 aa9.99□□□□□ -0.81
CCDC88A-206ENST00000430086 FAM177BA6PVY3 158 aa9.98□□□□□ -0.81
CCDC88A-206ENST00000430086 PRPF40AO75400 957 aaKnown RBP9.98□□□□□ -0.81
CCDC88A-206ENST00000430086 GSK3AP49840 483 aa9.98□□□□□ -0.81
CCDC88A-206ENST00000430086 GRM2Q14416 872 aa9.98□□□□□ -0.81
CCDC88A-206ENST00000430086 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.98□□□□□ -0.81
CCDC88A-206ENST00000430086 PI16Q6UXB8 463 aa9.98□□□□□ -0.81
CCDC88A-206ENST00000430086 RAC1P63000 192 aa9.97□□□□□ -0.81
CCDC88A-206ENST00000430086 TRIM28Q13263 835 aaKnown RBP9.97□□□□□ -0.81
CCDC88A-206ENST00000430086 PRRT3Q5FWE3 981 aa9.97□□□□□ -0.81
CCDC88A-206ENST00000430086 MAP4K3Q8IVH8 894 aa9.97□□□□□ -0.81
CCDC88A-206ENST00000430086 GLIS3Q8NEA6 775 aa9.97□□□□□ -0.81
CCDC88A-206ENST00000430086 FRMD6Q96NE9 622 aa9.97□□□□□ -0.81
CCDC88A-206ENST00000430086 SH2B1Q9NRF2 756 aaPredicted RBP9.97□□□□□ -0.81
CCDC88A-206ENST00000430086 A0A096LPE4 126 aa9.96□□□□□ -0.82
CCDC88A-206ENST00000430086 A0A1W2PPZ6 126 aa9.96□□□□□ -0.82
CCDC88A-206ENST00000430086 GIPC1O14908 333 aa9.96□□□□□ -0.82
CCDC88A-206ENST00000430086 SPATA31C1P0DKV0 1188 aa9.96□□□□□ -0.82
CCDC88A-206ENST00000430086 EPHA1P21709 976 aa9.96□□□□□ -0.82
CCDC88A-206ENST00000430086 GRIA4P48058 902 aa9.96□□□□□ -0.82
CCDC88A-206ENST00000430086 CABP4P57796 275 aa9.96□□□□□ -0.82
CCDC88A-206ENST00000430086 FMR1NBQ8N0W7 255 aaPredicted RBP9.96□□□□□ -0.82
CCDC88A-206ENST00000430086 ASAP3Q8TDY4 903 aa9.96□□□□□ -0.82
CCDC88A-206ENST00000430086 BCO2Q9BYV7 579 aa9.96□□□□□ -0.82
CCDC88A-206ENST00000430086 ABCB6Q9NP58 842 aa9.96□□□□□ -0.82
CCDC88A-206ENST00000430086 METTL12A8MUP2 240 aa9.95□□□□□ -0.82
CCDC88A-206ENST00000430086 H3BRJ5 948 aa9.95□□□□□ -0.82
CCDC88A-206ENST00000430086 RASSF7Q02833 373 aa9.95□□□□□ -0.82
CCDC88A-206ENST00000430086 PTPN12Q05209 780 aaKnown RBP9.95□□□□□ -0.82
CCDC88A-206ENST00000430086 VN1R5Q7Z5H4 357 aa9.95□□□□□ -0.82
CCDC88A-206ENST00000430086 FBXO11Q86XK2 927 aa9.95□□□□□ -0.82
CCDC88A-206ENST00000430086 SRCIN1Q9C0H9 1055 aa9.95□□□□□ -0.82
CCDC88A-206ENST00000430086 PPP4R2Q9NY27 417 aa9.95□□□□□ -0.82
CCDC88A-206ENST00000430086 TMEM238LA0A1B0GVL6 79 aa9.94□□□□□ -0.82
CCDC88A-206ENST00000430086 LINC01387J3KSC0 135 aa9.94□□□□□ -0.82
CCDC88A-206ENST00000430086 DEAF1O75398 565 aaPredicted RBP9.94□□□□□ -0.82
CCDC88A-206ENST00000430086 ITPKAP23677 461 aa9.94□□□□□ -0.82
CCDC88A-206ENST00000430086 SETDB1Q15047 1291 aa9.94□□□□□ -0.82
CCDC88A-206ENST00000430086 WNT8BQ93098 351 aa9.94□□□□□ -0.82
CCDC88A-206ENST00000430086 SPG7Q9UQ90 795 aa9.94□□□□□ -0.82
CCDC88A-206ENST00000430086 ELNP15502 786 aa9.93□□□□□ -0.82
CCDC88A-206ENST00000430086 GNA15P30679 374 aa9.93□□□□□ -0.82
CCDC88A-206ENST00000430086 SPRED3Q2MJR0 410 aa9.93□□□□□ -0.82
CCDC88A-206ENST00000430086 FAM117BQ6P1L5 589 aa9.93□□□□□ -0.82
CCDC88A-206ENST00000430086 DCAF11Q8TEB1 546 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms