RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 LMBRD1Q9NUN5 540 aa12.41□□□□□ -0.42
HDAC9-210ENST00000428307 AFF2P51816 1311 aa12.4□□□□□ -0.42
HDAC9-210ENST00000428307 IDH1O75874 414 aaKnown RBP12.4□□□□□ -0.42
HDAC9-210ENST00000428307 PTMSP20962 102 aa12.4□□□□□ -0.42
HDAC9-210ENST00000428307 GJB2P29033 226 aa12.4□□□□□ -0.42
HDAC9-210ENST00000428307 ST3GAL1Q11201 340 aa12.4□□□□□ -0.42
HDAC9-210ENST00000428307 STK3Q13188 491 aa12.4□□□□□ -0.42
HDAC9-210ENST00000428307 TOB2Q14106 344 aaPredicted RBP12.4□□□□□ -0.42
HDAC9-210ENST00000428307 LRRFIP1Q32MZ4 808 aaKnown RBP12.4□□□□□ -0.42
HDAC9-210ENST00000428307 TBC1D9BQ66K14 1250 aa12.4□□□□□ -0.42
HDAC9-210ENST00000428307 C3orf67Q6ZVT6 689 aa12.4□□□□□ -0.42
HDAC9-210ENST00000428307 DSCC1Q9BVC3 393 aa12.4□□□□□ -0.42
HDAC9-210ENST00000428307 LRRC2Q9BYS8 371 aa12.4□□□□□ -0.42
HDAC9-210ENST00000428307 SYT1P21579 422 aa12.4□□□□□ -0.43
HDAC9-210ENST00000428307 SLC9C2Q5TAH2 1124 aa12.4□□□□□ -0.43
HDAC9-210ENST00000428307 STOX1Q6ZVD7 989 aa12.4□□□□□ -0.43
HDAC9-210ENST00000428307 CCDC24Q8N4L8 307 aa12.4□□□□□ -0.43
HDAC9-210ENST00000428307 HSP90B1P14625 803 aaKnown RBP12.39□□□□□ -0.43
HDAC9-210ENST00000428307 FGFR2P21802 821 aa12.39□□□□□ -0.43
HDAC9-210ENST00000428307 ANKRD1Q15327 319 aa12.39□□□□□ -0.43
HDAC9-210ENST00000428307 AMIGO3Q86WK7 504 aa12.39□□□□□ -0.43
HDAC9-210ENST00000428307 BCL2L12Q9HB09 334 aa12.39□□□□□ -0.43
HDAC9-210ENST00000428307 EP400Q96L91 3159 aa12.39□□□□□ -0.43
HDAC9-210ENST00000428307 CNTNAP4Q9C0A0 1308 aa12.39□□□□□ -0.43
HDAC9-210ENST00000428307 WDR33Q9C0J8 1336 aaKnown RBP12.39□□□□□ -0.43
HDAC9-210ENST00000428307 RPS6KA4O75676 772 aa12.38□□□□□ -0.43
HDAC9-210ENST00000428307 ZFYP08048 801 aaPredicted RBP12.38□□□□□ -0.43
HDAC9-210ENST00000428307 FGD1P98174 961 aa12.38□□□□□ -0.43
HDAC9-210ENST00000428307 TICAM2Q86XR7 235 aa12.38□□□□□ -0.43
HDAC9-210ENST00000428307 SEPT12Q8IYM1 358 aa12.38□□□□□ -0.43
HDAC9-210ENST00000428307 APPBP2Q92624 585 aa12.38□□□□□ -0.43
HDAC9-210ENST00000428307 PIH1D3Q9NQM4 214 aaKnown RBP12.38□□□□□ -0.43
HDAC9-210ENST00000428307 GOLGA6L3A6NEY3 463 aa12.38□□□□□ -0.43
HDAC9-210ENST00000428307 STX6O43752 255 aa12.38□□□□□ -0.43
HDAC9-210ENST00000428307 ZPR1O75312 459 aa12.38□□□□□ -0.43
HDAC9-210ENST00000428307 SLC5A1P13866 664 aa12.38□□□□□ -0.43
HDAC9-210ENST00000428307 HAND2P61296 217 aa12.38□□□□□ -0.43
HDAC9-210ENST00000428307 Q6ZUG5 572 aa12.38□□□□□ -0.43
HDAC9-210ENST00000428307 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.38□□□□□ -0.43
HDAC9-210ENST00000428307 GDPD2Q9HCC8 539 aa12.38□□□□□ -0.43
HDAC9-210ENST00000428307 RTCBQ9Y3I0 505 aaKnown RBP12.38□□□□□ -0.43
HDAC9-210ENST00000428307 WTIPA6NIX2 430 aaPredicted RBP12.37□□□□□ -0.43
HDAC9-210ENST00000428307 PHF14O94880 888 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 BCAMP50895 628 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 CHRNDQ07001 517 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 KLHL40Q2TBA0 621 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 ZNF512BQ96KM6 892 aaPredicted RBP12.37□□□□□ -0.43
HDAC9-210ENST00000428307 SETDB2Q96T68 719 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 ANKRD36CQ5JPF3 1778 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 E7EWF7 191 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 FOXP2O15409 715 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 FGAP02671 866 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 RASGRF1Q13972 1273 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 RC3H1Q5TC82 1133 aaKnown RBP12.37□□□□□ -0.43
HDAC9-210ENST00000428307 CHST3Q7LGC8 479 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 SPATA5Q8NB90 893 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 ARHGEF1Q92888 912 aaKnown RBP12.37□□□□□ -0.43
HDAC9-210ENST00000428307 BRF1Q92994 677 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 NARFQ9UHQ1 456 aa12.37□□□□□ -0.43
HDAC9-210ENST00000428307 GPAA1O43292 621 aa12.36□□□□□ -0.43
HDAC9-210ENST00000428307 UQCRFS1P1P0C7P4 283 aa12.36□□□□□ -0.43
HDAC9-210ENST00000428307 ZSCAN22P10073 491 aaPredicted RBP12.36□□□□□ -0.43
HDAC9-210ENST00000428307 ARID4AP29374 1257 aaPredicted RBP12.36□□□□□ -0.43
HDAC9-210ENST00000428307 TTF1Q15361 905 aaPredicted RBP12.36□□□□□ -0.43
HDAC9-210ENST00000428307 CAVIN1Q6NZI2 390 aaKnown RBP12.36□□□□□ -0.43
HDAC9-210ENST00000428307 CDC5LQ99459 802 aaKnown RBP12.36□□□□□ -0.43
HDAC9-210ENST00000428307 ALDH8A1Q9H2A2 487 aaPredicted RBP12.36□□□□□ -0.43
HDAC9-210ENST00000428307 IQSEC3Q9UPP2 1182 aaPredicted RBP12.36□□□□□ -0.43
HDAC9-210ENST00000428307 ABCC12Q96J65 1359 aa12.36□□□□□ -0.43
HDAC9-210ENST00000428307 ADD2P35612 726 aa12.36□□□□□ -0.43
HDAC9-210ENST00000428307 DHX32Q7L7V1 743 aaKnown RBP12.36□□□□□ -0.43
HDAC9-210ENST00000428307 NBPF5PQ86XG9 351 aaPredicted RBP12.36□□□□□ -0.43
HDAC9-210ENST00000428307 TRPC5Q9UL62 973 aaPredicted RBP12.36□□□□□ -0.43
HDAC9-210ENST00000428307 BRPF3Q9ULD4 1205 aa12.36□□□□□ -0.43
HDAC9-210ENST00000428307 WWC3Q9ULE0 1092 aa12.36□□□□□ -0.43
HDAC9-210ENST00000428307 TPRNQ4KMQ1 711 aa12.35□□□□□ -0.43
HDAC9-210ENST00000428307 ANKRD18AQ8IVF6 992 aa12.35□□□□□ -0.43
HDAC9-210ENST00000428307 GPT2Q8TD30 523 aa12.35□□□□□ -0.43
HDAC9-210ENST00000428307 QTRT2Q9H974 415 aaKnown RBP12.35□□□□□ -0.43
HDAC9-210ENST00000428307 ZNF532Q9HCE3 1301 aa12.35□□□□□ -0.43
HDAC9-210ENST00000428307 FSD2A1L4K1 749 aa12.35□□□□□ -0.43
HDAC9-210ENST00000428307 VPS37CA5D8V6 355 aaPredicted RBP12.35□□□□□ -0.43
HDAC9-210ENST00000428307 APPP05067 770 aa12.35□□□□□ -0.43
HDAC9-210ENST00000428307 HMGB1P09429 215 aaKnown RBP12.35□□□□□ -0.43
HDAC9-210ENST00000428307 SF3B3Q15393 1217 aaKnown RBP12.35□□□□□ -0.43
HDAC9-210ENST00000428307 LARP1BQ659C4 914 aaKnown RBP12.35□□□□□ -0.43
HDAC9-210ENST00000428307 ZSCAN25Q6NSZ9 544 aa12.35□□□□□ -0.43
HDAC9-210ENST00000428307 CELF1Q92879 486 aaKnown RBP12.35□□□□□ -0.43
HDAC9-210ENST00000428307 NSFL1CQ9UNZ2 370 aaKnown RBP12.35□□□□□ -0.43
HDAC9-210ENST00000428307 NPHP1O15259 732 aa12.34□□□□□ -0.43
HDAC9-210ENST00000428307 ONECUT3O60422 494 aaPredicted RBP12.34□□□□□ -0.43
HDAC9-210ENST00000428307 PDE6AP16499 860 aa12.34□□□□□ -0.43
HDAC9-210ENST00000428307 IMMTQ16891 758 aaKnown RBP12.34□□□□□ -0.43
HDAC9-210ENST00000428307 GAS2L3Q86XJ1 694 aa12.34□□□□□ -0.43
HDAC9-210ENST00000428307 CTNNA3Q9UI47 895 aa12.34□□□□□ -0.43
HDAC9-210ENST00000428307 NAP1L2Q9ULW6 460 aaPredicted RBP12.34□□□□□ -0.43
HDAC9-210ENST00000428307 XRCC6P12956 609 aaKnown RBP eCLIP12.34□□□□□ -0.43
HDAC9-210ENST00000428307 RFC4P35249 363 aa12.34□□□□□ -0.43
HDAC9-210ENST00000428307 FAM196AQ6ZSG2 479 aa12.34□□□□□ -0.43
HDAC9-210ENST00000428307 NLRP3Q96P20 1036 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms