RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 SMARCA5O60264 1052 aaPredicted RBP14.93□□□□□ -0.02
LINC00539-202ENST00000423575 IFIT1P09914 478 aaKnown RBP14.93□□□□□ -0.02
LINC00539-202ENST00000423575 SLC5A1P13866 664 aa14.93□□□□□ -0.02
LINC00539-202ENST00000423575 LMNB1P20700 586 aa14.93□□□□□ -0.02
LINC00539-202ENST00000423575 ADORA1P30542 326 aa14.93□□□□□ -0.02
LINC00539-202ENST00000423575 TNNI3KQ59H18 835 aa14.93□□□□□ -0.02
LINC00539-202ENST00000423575 ERICH6BQ5W0A0 696 aa14.93□□□□□ -0.02
LINC00539-202ENST00000423575 SMC5Q8IY18 1101 aa14.93□□□□□ -0.02
LINC00539-202ENST00000423575 GCC1Q96CN9 775 aa14.93□□□□□ -0.02
LINC00539-202ENST00000423575 GPR108Q9NPR9 543 aa14.93□□□□□ -0.02
LINC00539-202ENST00000423575 AKAP2Q9Y2D5 859 aa14.93□□□□□ -0.02
LINC00539-202ENST00000423575 FPGT-TNNI3KV9GXZ4 949 aa14.93□□□□□ -0.02
LINC00539-202ENST00000423575 TIMM10P62072 90 aa14.92□□□□□ -0.02
LINC00539-202ENST00000423575 C9orf131Q5VYM1 1079 aa14.92□□□□□ -0.02
LINC00539-202ENST00000423575 LARGE2Q8N3Y3 721 aa14.92□□□□□ -0.02
LINC00539-202ENST00000423575 EAF2Q96CJ1 260 aaPredicted RBP14.92□□□□□ -0.02
LINC00539-202ENST00000423575 LRRCC1Q9C099 1032 aa14.92□□□□□ -0.02
LINC00539-202ENST00000423575 ZC3H12CQ9C0D7 883 aaKnown RBP14.92□□□□□ -0.02
LINC00539-202ENST00000423575 VPS33BQ9H267 617 aa14.92□□□□□ -0.02
LINC00539-202ENST00000423575 TLR7Q9NYK1 1049 aaKnown RBP14.92□□□□□ -0.02
LINC00539-202ENST00000423575 RNF181Q9P0P0 153 aa14.92□□□□□ -0.02
LINC00539-202ENST00000423575 GYG1P46976 350 aa14.91□□□□□ -0.02
LINC00539-202ENST00000423575 DOK7Q18PE1 504 aa14.91□□□□□ -0.02
LINC00539-202ENST00000423575 DBNDD1Q9H9R9 158 aa14.91□□□□□ -0.02
LINC00539-202ENST00000423575 FBXO33Q7Z6M2 555 aa14.9□□□□□ -0.02
LINC00539-202ENST00000423575 AACSQ86V21 672 aa14.9□□□□□ -0.02
LINC00539-202ENST00000423575 NIM1KQ8IY84 436 aa14.9□□□□□ -0.02
LINC00539-202ENST00000423575 CLASRPQ8N2M8 674 aaKnown RBP14.9□□□□□ -0.02
LINC00539-202ENST00000423575 XAGE2Q96GT9 111 aa14.9□□□□□ -0.02
LINC00539-202ENST00000423575 FAM84BQ96KN1 310 aaPredicted RBP14.9□□□□□ -0.02
LINC00539-202ENST00000423575 NEUROD6Q96NK8 337 aa14.9□□□□□ -0.02
LINC00539-202ENST00000423575 DBNDD2Q9BQY9 259 aa14.9□□□□□ -0.02
LINC00539-202ENST00000423575 BCL11AQ9H165 835 aa14.9□□□□□ -0.02
LINC00539-202ENST00000423575 DBNLQ9UJU6 430 aaKnown RBP14.9□□□□□ -0.02
LINC00539-202ENST00000423575 KDM2BQ8NHM5 1336 aa14.9□□□□□ -0.02
LINC00539-202ENST00000423575 YDJCA8MPS7 323 aa14.89□□□□□ -0.03
LINC00539-202ENST00000423575 ECE2O60344 883 aa14.89□□□□□ -0.03
LINC00539-202ENST00000423575 BCAMP50895 628 aa14.89□□□□□ -0.03
LINC00539-202ENST00000423575 ZNF804AQ7Z570 1209 aa14.89□□□□□ -0.03
LINC00539-202ENST00000423575 COA1Q9GZY4 146 aa14.89□□□□□ -0.03
LINC00539-202ENST00000423575 CCDC8Q9H0W5 538 aaPredicted RBP14.89□□□□□ -0.03
LINC00539-202ENST00000423575 ARAP2Q8WZ64 1704 aa14.89□□□□□ -0.03
LINC00539-202ENST00000423575 HIBADHP31937 336 aaKnown RBP14.88□□□□□ -0.03
LINC00539-202ENST00000423575 PHKA1P46020 1223 aa14.88□□□□□ -0.03
LINC00539-202ENST00000423575 CAVIN4Q5BKX8 364 aa14.88□□□□□ -0.03
LINC00539-202ENST00000423575 ANKRD45Q5TZF3 282 aa14.88□□□□□ -0.03
LINC00539-202ENST00000423575 B4GALNT3Q6L9W6 998 aa14.88□□□□□ -0.03
LINC00539-202ENST00000423575 JDP2Q8WYK2 163 aa14.88□□□□□ -0.03
LINC00539-202ENST00000423575 CCDC136Q96JN2 1154 aa14.88□□□□□ -0.03
LINC00539-202ENST00000423575 CD209Q9NNX6 404 aa14.88□□□□□ -0.03
LINC00539-202ENST00000423575 PPP4R2Q9NY27 417 aa14.88□□□□□ -0.03
LINC00539-202ENST00000423575 SBF1O95248 1867 aa14.87□□□□□ -0.03
LINC00539-202ENST00000423575 NUCB1Q02818 461 aa14.87□□□□□ -0.03
LINC00539-202ENST00000423575 CCDC102BQ68D86 513 aa14.87□□□□□ -0.03
LINC00539-202ENST00000423575 ZNRF3Q9ULT6 936 aa14.87□□□□□ -0.03
LINC00539-202ENST00000423575 ZNF541Q9H0D2 1346 aa14.87□□□□□ -0.03
LINC00539-202ENST00000423575 G3V3G9 751 aa14.86□□□□□ -0.03
LINC00539-202ENST00000423575 FZD9O00144 591 aa14.86□□□□□ -0.03
LINC00539-202ENST00000423575 IFIT2P09913 472 aaKnown RBP14.86□□□□□ -0.03
LINC00539-202ENST00000423575 IL1R1P14778 569 aa14.86□□□□□ -0.03
LINC00539-202ENST00000423575 GORABQ5T7V8 394 aa14.86□□□□□ -0.03
LINC00539-202ENST00000423575 DCAF8Q5TAQ9 597 aa14.86□□□□□ -0.03
LINC00539-202ENST00000423575 VPS37DQ86XT2 251 aa14.86□□□□□ -0.03
LINC00539-202ENST00000423575 TDRD7Q8NHU6 1098 aaKnown RBP14.86□□□□□ -0.03
LINC00539-202ENST00000423575 OTUD7AQ8TE49 926 aaPredicted RBP14.86□□□□□ -0.03
LINC00539-202ENST00000423575 LNPKQ9C0E8 428 aa14.86□□□□□ -0.03
LINC00539-202ENST00000423575 KCNQ5Q9NR82 932 aa14.86□□□□□ -0.03
LINC00539-202ENST00000423575 IQSEC3Q9UPP2 1182 aaPredicted RBP14.86□□□□□ -0.03
LINC00539-202ENST00000423575 COL1A1P02452 1464 aaPredicted RBP14.86□□□□□ -0.03
LINC00539-202ENST00000423575 TIAM2Q8IVF5 1701 aa14.86□□□□□ -0.03
LINC00539-202ENST00000423575 CENPQQ7L2Z9 268 aaPredicted RBP14.85□□□□□ -0.03
LINC00539-202ENST00000423575 PODNQ7Z5L7 613 aa14.85□□□□□ -0.03
LINC00539-202ENST00000423575 CHD1LQ86WJ1 897 aa14.85□□□□□ -0.03
LINC00539-202ENST00000423575 C16orf71Q8IYS4 520 aaPredicted RBP14.85□□□□□ -0.03
LINC00539-202ENST00000423575 ZC3H4Q9UPT8 1303 aaKnown RBP14.85□□□□□ -0.03
LINC00539-202ENST00000423575 RAD17O75943 681 aa14.84□□□□□ -0.03
LINC00539-202ENST00000423575 ARID4AP29374 1257 aaPredicted RBP14.84□□□□□ -0.03
LINC00539-202ENST00000423575 CXCL9Q07325 125 aa14.84□□□□□ -0.03
LINC00539-202ENST00000423575 RASGRF1Q13972 1273 aa14.84□□□□□ -0.03
LINC00539-202ENST00000423575 ZBTB47Q9UFB7 747 aaPredicted RBP14.84□□□□□ -0.03
LINC00539-202ENST00000423575 JAG2Q9Y219 1238 aa14.84□□□□□ -0.03
LINC00539-202ENST00000423575 SALL3Q9BXA9 1300 aa14.84□□□□□ -0.03
LINC00539-202ENST00000423575 DICER1Q9UPY3 1922 aaKnown RBP14.84□□□□□ -0.03
LINC00539-202ENST00000423575 SCN9AQ15858 1988 aa14.84□□□□□ -0.03
LINC00539-202ENST00000423575 CCDC88AQ3V6T2 1871 aa14.83□□□□□ -0.04
LINC00539-202ENST00000423575 EIF6P56537 245 aaKnown RBP14.83□□□□□ -0.04
LINC00539-202ENST00000423575 SCARF1Q14162 830 aa14.83□□□□□ -0.04
LINC00539-202ENST00000423575 CCDC158Q5M9N0 1113 aa14.83□□□□□ -0.04
LINC00539-202ENST00000423575 TTC39AQ5SRH9 613 aa14.83□□□□□ -0.04
LINC00539-202ENST00000423575 PI16Q6UXB8 463 aa14.83□□□□□ -0.04
LINC00539-202ENST00000423575 GNL3LQ9NVN8 582 aaKnown RBP14.83□□□□□ -0.04
LINC00539-202ENST00000423575 USP17L3A6NCW0 530 aa14.82□□□□□ -0.04
LINC00539-202ENST00000423575 USP17L4A6NCW7 530 aa14.82□□□□□ -0.04
LINC00539-202ENST00000423575 PSMD14O00487 310 aa14.82□□□□□ -0.04
LINC00539-202ENST00000423575 ZBTB22O15209 634 aa14.82□□□□□ -0.04
LINC00539-202ENST00000423575 FRAT2O75474 233 aaPredicted RBP14.82□□□□□ -0.04
LINC00539-202ENST00000423575 UQCRFS1P1P0C7P4 283 aa14.82□□□□□ -0.04
LINC00539-202ENST00000423575 MCAMP43121 646 aa14.82□□□□□ -0.04
LINC00539-202ENST00000423575 GTF2IP78347 998 aa14.82□□□□□ -0.04
LINC00539-202ENST00000423575 CHAF1AQ13111 956 aaPredicted RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms