RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SDF4Q9BRK5 362 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 NCAPD2Q15021 1401 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 A0A1W2PQ27 194 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 A0A1W2PQ64 194 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 A0A1W2PQD8 194 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 PTPDC1A2A3K4 754 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 NDUFA8P51970 172 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 GPS2Q13227 327 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 ADALQ6DHV7 355 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 EPC1Q9H2F5 836 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 RASSF4Q9H2L5 321 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 C9orf78Q9NZ63 289 aaPredicted RBP12.43□□□□□ -0.42
USP54-204ENST00000422491 SALL1Q9NSC2 1324 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 KDM3BQ7LBC6 1761 aa12.43□□□□□ -0.42
USP54-204ENST00000422491 A0A1B0GVL5 298 aa12.42□□□□□ -0.42
USP54-204ENST00000422491 CYP21A2P08686 494 aa12.42□□□□□ -0.42
USP54-204ENST00000422491 KAZALD1Q96I82 304 aa12.42□□□□□ -0.42
USP54-204ENST00000422491 LRRC2Q9BYS8 371 aa12.42□□□□□ -0.42
USP54-204ENST00000422491 HSD3B7Q9H2F3 369 aa12.42□□□□□ -0.42
USP54-204ENST00000422491 ATG3Q9NT62 314 aa12.42□□□□□ -0.42
USP54-204ENST00000422491 MYO1CO00159 1063 aa12.42□□□□□ -0.42
USP54-204ENST00000422491 GPR161Q8N6U8 529 aaKnown RBP12.42□□□□□ -0.42
USP54-204ENST00000422491 EFCC1Q9HA90 598 aa12.42□□□□□ -0.42
USP54-204ENST00000422491 LCMT1Q9UIC8 334 aa12.42□□□□□ -0.42
USP54-204ENST00000422491 FANCCQ00597 558 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 EDC3Q96F86 508 aaKnown RBP12.41□□□□□ -0.42
USP54-204ENST00000422491 PSD3Q9NYI0 1048 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 MRC1P22897 1456 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 VWA3AA6NCI4 1184 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 NLRP12P59046 1061 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 G3BP1Q13283 466 aaKnown RBP eCLIP12.41□□□□□ -0.42
USP54-204ENST00000422491 STOX1Q6ZVD7 989 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 CCDC191Q8NCU4 936 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 CCDC34Q96HJ3 373 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 FUT8Q9BYC5 575 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 RTEL1Q9NZ71 1219 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 RSPH14Q9UHP6 348 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 MAP3K2Q9Y2U5 619 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 TRIM66O15016 1216 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 RSRC2Q7L4I2 434 aaKnown RBP12.41□□□□□ -0.42
USP54-204ENST00000422491 FCHSD1Q86WN1 690 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 FBXO18Q8NFZ0 1043 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 GOLGA5Q8TBA6 731 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 EXOC4Q96A65 974 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 SUCLG2Q96I99 432 aa12.41□□□□□ -0.42
USP54-204ENST00000422491 SEC62Q99442 399 aaKnown RBP12.41□□□□□ -0.42
USP54-204ENST00000422491 U3KPZ7 1027 aaPredicted RBP12.41□□□□□ -0.42
USP54-204ENST00000422491 AGLP35573 1532 aa12.4□□□□□ -0.42
USP54-204ENST00000422491 LAMA4Q16363 1823 aa12.4□□□□□ -0.42
USP54-204ENST00000422491 PIK3C2AO00443 1686 aa12.4□□□□□ -0.42
USP54-204ENST00000422491 IKBKBO14920 756 aa12.4□□□□□ -0.42
USP54-204ENST00000422491 ATP1A3P13637 1013 aa12.4□□□□□ -0.42
USP54-204ENST00000422491 MAP3K9P80192 1104 aa12.4□□□□□ -0.42
USP54-204ENST00000422491 ZRSR1Q15695 479 aaKnown RBP12.4□□□□□ -0.42
USP54-204ENST00000422491 CWF19L2Q2TBE0 894 aaKnown RBP12.4□□□□□ -0.42
USP54-204ENST00000422491 FMNL2Q96PY5 1086 aa12.4□□□□□ -0.42
USP54-204ENST00000422491 MPHOSPH8Q99549 860 aa12.4□□□□□ -0.42
USP54-204ENST00000422491 SIL1Q9H173 461 aa12.4□□□□□ -0.42
USP54-204ENST00000422491 ZNF609O15014 1411 aa12.4□□□□□ -0.42
USP54-204ENST00000422491 KCNQ3O43525 872 aa12.4□□□□□ -0.43
USP54-204ENST00000422491 LMOD1P29536 600 aaPredicted RBP12.4□□□□□ -0.43
USP54-204ENST00000422491 HOXC9P31274 260 aa12.4□□□□□ -0.43
USP54-204ENST00000422491 NOP2P46087 812 aaKnown RBP12.4□□□□□ -0.43
USP54-204ENST00000422491 TMEM139Q8IV31 216 aa12.4□□□□□ -0.43
USP54-204ENST00000422491 IQUBQ8NA54 791 aa12.4□□□□□ -0.43
USP54-204ENST00000422491 LINC00301Q8NCQ3 95 aa12.4□□□□□ -0.43
USP54-204ENST00000422491 UTP14AQ9BVJ6 771 aaKnown RBP12.4□□□□□ -0.43
USP54-204ENST00000422491 CHMP4AQ9BY43 222 aa12.4□□□□□ -0.43
USP54-204ENST00000422491 AGXT2Q9BYV1 514 aa12.4□□□□□ -0.43
USP54-204ENST00000422491 BICC1Q9H694 974 aaKnown RBP12.4□□□□□ -0.43
USP54-204ENST00000422491 ARFGAP3Q9NP61 516 aa12.4□□□□□ -0.43
USP54-204ENST00000422491 HDAC5Q9UQL6 1122 aa12.4□□□□□ -0.43
USP54-204ENST00000422491 UTYO14607 1347 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 BIN1O00499 593 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 GUCY1B3Q02153 619 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 SRLQ86TD4 932 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 CWC15Q9P013 229 aaKnown RBP12.39□□□□□ -0.43
USP54-204ENST00000422491 ADAM21Q9UKJ8 722 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 MRFAP1Q9Y605 127 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 DIP2AQ14689 1571 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 SLC3A2P08195 630 aaKnown RBP12.39□□□□□ -0.43
USP54-204ENST00000422491 GYS2P54840 703 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 APOBRQ0VD83 1088 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 CCDC129Q6ZRS4 1044 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 DHX32Q7L7V1 743 aaKnown RBP12.39□□□□□ -0.43
USP54-204ENST00000422491 C10orf67Q8IYJ2 551 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 DPF2Q92785 391 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 AK7Q96M32 723 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 PARD6BQ9BYG5 372 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 RFX7Q2KHR2 1363 aa12.39□□□□□ -0.43
USP54-204ENST00000422491 H3BQF6 201 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 ZSCAN12O43309 604 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 CHGBP05060 677 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 KSR2Q6VAB6 950 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 WDR24Q96S15 920 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 DBF4Q9UBU7 674 aaPredicted RBP12.38□□□□□ -0.43
USP54-204ENST00000422491 CARMIL3Q8ND23 1372 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 SLIT1O75093 1534 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 GRM8O00222 908 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 HMGB1P09429 215 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms