RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TSHZ2Q9NRE2 1034 aa20.79■□□□□ 0.92
CCDC28B-202ENST00000421922 GNL3LQ9NVN8 582 aaKnown RBP20.79■□□□□ 0.92
CCDC28B-202ENST00000421922 DLEC1Q9Y238 1755 aa20.78■□□□□ 0.92
CCDC28B-202ENST00000421922 CCDC102BQ68D86 513 aa20.78■□□□□ 0.92
CCDC28B-202ENST00000421922 LEMD3Q9Y2U8 911 aa20.78■□□□□ 0.92
CCDC28B-202ENST00000421922 ZNF804BA4D1E1 1349 aa20.78■□□□□ 0.92
CCDC28B-202ENST00000421922 KIF13BQ9NQT8 1826 aa20.78■□□□□ 0.92
CCDC28B-202ENST00000421922 HIP1O00291 1037 aa20.78■□□□□ 0.92
CCDC28B-202ENST00000421922 SP8Q8IXZ3 490 aa20.78■□□□□ 0.92
CCDC28B-202ENST00000421922 DIAPH3Q9NSV4 1193 aa20.78■□□□□ 0.92
CCDC28B-202ENST00000421922 PAG1Q9NWQ8 432 aa20.78■□□□□ 0.92
CCDC28B-202ENST00000421922 GGA1Q9UJY5 639 aa20.78■□□□□ 0.92
CCDC28B-202ENST00000421922 NSFL1CQ9UNZ2 370 aaKnown RBP20.78■□□□□ 0.92
CCDC28B-202ENST00000421922 MYH13Q9UKX3 1938 aa20.77■□□□□ 0.92
CCDC28B-202ENST00000421922 SNAP23O00161 211 aa20.77■□□□□ 0.91
CCDC28B-202ENST00000421922 ATP2B4P23634 1241 aa20.77■□□□□ 0.91
CCDC28B-202ENST00000421922 CHRNA5P30532 468 aa20.77■□□□□ 0.91
CCDC28B-202ENST00000421922 PHKA1P46020 1223 aa20.77■□□□□ 0.91
CCDC28B-202ENST00000421922 FKBP4Q02790 459 aaKnown RBP eCLIP20.77■□□□□ 0.91
CCDC28B-202ENST00000421922 ZNF512BQ96KM6 892 aaPredicted RBP20.77■□□□□ 0.91
CCDC28B-202ENST00000421922 ATP6V0A2Q9Y487 856 aa20.77■□□□□ 0.91
CCDC28B-202ENST00000421922 GOLIM4O00461 696 aa20.76■□□□□ 0.91
CCDC28B-202ENST00000421922 UFL1O94874 794 aa20.76■□□□□ 0.91
CCDC28B-202ENST00000421922 MFAP1P55081 439 aaKnown RBP20.76■□□□□ 0.91
CCDC28B-202ENST00000421922 GPSM2P81274 684 aa20.76■□□□□ 0.91
CCDC28B-202ENST00000421922 LRRFIP1Q32MZ4 808 aaKnown RBP20.76■□□□□ 0.91
CCDC28B-202ENST00000421922 ARID4AP29374 1257 aaPredicted RBP20.75■□□□□ 0.91
CCDC28B-202ENST00000421922 RUFY2Q8WXA3 655 aa20.75■□□□□ 0.91
CCDC28B-202ENST00000421922 RFX7Q2KHR2 1363 aa20.74■□□□□ 0.91
CCDC28B-202ENST00000421922 FRAT2O75474 233 aaPredicted RBP20.74■□□□□ 0.91
CCDC28B-202ENST00000421922 PTGER2P43116 358 aa20.74■□□□□ 0.91
CCDC28B-202ENST00000421922 PRPF40BQ6NWY9 871 aaKnown RBP20.74■□□□□ 0.91
CCDC28B-202ENST00000421922 KLHL34Q8N239 644 aa20.74■□□□□ 0.91
CCDC28B-202ENST00000421922 ZNF784Q8NCA9 323 aaPredicted RBP20.74■□□□□ 0.91
CCDC28B-202ENST00000421922 SNRKQ9NRH2 765 aa20.74■□□□□ 0.91
CCDC28B-202ENST00000421922 C6orf229H3BNL8 230 aa20.73■□□□□ 0.91
CCDC28B-202ENST00000421922 CHMLP26374 656 aa20.73■□□□□ 0.91
CCDC28B-202ENST00000421922 GYG1P46976 350 aa20.73■□□□□ 0.91
CCDC28B-202ENST00000421922 BCAMP50895 628 aa20.73■□□□□ 0.91
CCDC28B-202ENST00000421922 TTF1Q15361 905 aaPredicted RBP20.73■□□□□ 0.91
CCDC28B-202ENST00000421922 AKAP11Q9UKA4 1901 aa20.73■□□□□ 0.91
CCDC28B-202ENST00000421922 MYH7P12883 1935 aa20.72■□□□□ 0.91
CCDC28B-202ENST00000421922 HIBADHP31937 336 aaKnown RBP20.72■□□□□ 0.91
CCDC28B-202ENST00000421922 MCAMP43121 646 aa20.72■□□□□ 0.91
CCDC28B-202ENST00000421922 ZNF804AQ7Z570 1209 aa20.72■□□□□ 0.91
CCDC28B-202ENST00000421922 MPNDQ8N594 471 aa20.72■□□□□ 0.91
CCDC28B-202ENST00000421922 EDC3Q96F86 508 aaKnown RBP20.72■□□□□ 0.91
CCDC28B-202ENST00000421922 PODXL2Q9NZ53 605 aa20.72■□□□□ 0.91
CCDC28B-202ENST00000421922 NDUFB9Q9Y6M9 179 aa20.72■□□□□ 0.91
CCDC28B-202ENST00000421922 SLX4Q8IY92 1834 aa20.72■□□□□ 0.91
CCDC28B-202ENST00000421922 REC8O95072 547 aa20.71■□□□□ 0.91
CCDC28B-202ENST00000421922 ZAP70P43403 619 aa20.71■□□□□ 0.91
CCDC28B-202ENST00000421922 DPP8Q6V1X1 898 aaPredicted RBP20.71■□□□□ 0.91
CCDC28B-202ENST00000421922 TTLL6Q8N841 843 aa20.71■□□□□ 0.91
CCDC28B-202ENST00000421922 KBTBD3Q8NAB2 608 aa20.71■□□□□ 0.91
CCDC28B-202ENST00000421922 SPATA5Q8NB90 893 aa20.71■□□□□ 0.91
CCDC28B-202ENST00000421922 TGFB2P61812 414 aa20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 SCARF1Q14162 830 aa20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 LTBP1Q14766 1721 aa20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 SEMA3EO15041 775 aa20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 DPEP1P16444 411 aa20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 RASGRF1Q13972 1273 aa20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 CC2D2BQ6DHV5 1058 aa20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 TICAM2Q86XR7 235 aa20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 FAM84BQ96KN1 310 aaPredicted RBP20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 ESYT1Q9BSJ8 1104 aa20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 HMG20BQ9P0W2 317 aa20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 ZNF219Q9P2Y4 722 aaPredicted RBP20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 DENND2AQ9ULE3 1009 aa20.7■□□□□ 0.9
CCDC28B-202ENST00000421922 SEC24BO95487 1268 aa20.69■□□□□ 0.9
CCDC28B-202ENST00000421922 WASHC4Q2M389 1173 aa20.69■□□□□ 0.9
CCDC28B-202ENST00000421922 ZSCAN25Q6NSZ9 544 aa20.69■□□□□ 0.9
CCDC28B-202ENST00000421922 CWC27Q6UX04 472 aaKnown RBP20.69■□□□□ 0.9
CCDC28B-202ENST00000421922 FBXO33Q7Z6M2 555 aa20.69■□□□□ 0.9
CCDC28B-202ENST00000421922 TBC1D16Q8TBP0 767 aa20.69■□□□□ 0.9
CCDC28B-202ENST00000421922 EYA3Q99504 573 aa20.69■□□□□ 0.9
CCDC28B-202ENST00000421922 MED23Q9ULK4 1368 aa20.68■□□□□ 0.9
CCDC28B-202ENST00000421922 UTRNP46939 3433 aa20.68■□□□□ 0.9
CCDC28B-202ENST00000421922 A0A0G2JLW4 131 aa20.68■□□□□ 0.9
CCDC28B-202ENST00000421922 WTIPA6NIX2 430 aaPredicted RBP20.68■□□□□ 0.9
CCDC28B-202ENST00000421922 KLRK1P26718 216 aa20.68■□□□□ 0.9
CCDC28B-202ENST00000421922 PI16Q6UXB8 463 aa20.68■□□□□ 0.9
CCDC28B-202ENST00000421922 KIAA1211Q6ZU35 1233 aa20.68■□□□□ 0.9
CCDC28B-202ENST00000421922 C15orf52Q6ZUT6 534 aaKnown RBP20.68■□□□□ 0.9
CCDC28B-202ENST00000421922 IQSEC3Q9UPP2 1182 aaPredicted RBP20.68■□□□□ 0.9
CCDC28B-202ENST00000421922 RAD50Q92878 1312 aa20.67■□□□□ 0.9
CCDC28B-202ENST00000421922 G3V3G9 751 aa20.67■□□□□ 0.9
CCDC28B-202ENST00000421922 ZFYP08048 801 aaPredicted RBP20.67■□□□□ 0.9
CCDC28B-202ENST00000421922 DCAF8Q5TAQ9 597 aa20.67■□□□□ 0.9
CCDC28B-202ENST00000421922 SLC51AQ86UW1 340 aa20.67■□□□□ 0.9
CCDC28B-202ENST00000421922 CD2APQ9Y5K6 639 aa20.67■□□□□ 0.9
CCDC28B-202ENST00000421922 CHD4Q14839 1912 aa20.66■□□□□ 0.9
CCDC28B-202ENST00000421922 IDH1O75874 414 aaKnown RBP20.66■□□□□ 0.9
CCDC28B-202ENST00000421922 NMIQ13287 307 aaPredicted RBP20.66■□□□□ 0.9
CCDC28B-202ENST00000421922 GRIPAP1Q4V328 841 aa20.66■□□□□ 0.9
CCDC28B-202ENST00000421922 GPR101Q96P66 508 aaPredicted RBP20.66■□□□□ 0.9
CCDC28B-202ENST00000421922 SYT17Q9BSW7 474 aa20.66■□□□□ 0.9
CCDC28B-202ENST00000421922 ANTXR1Q9H6X2 564 aa20.66■□□□□ 0.9
CCDC28B-202ENST00000421922 ANO2Q9NQ90 1003 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms