RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 NFKBIBQ15653 356 aa9.96□□□□□ -0.81
USP54-203ENST00000418501 MAP4K1Q92918 833 aa9.96□□□□□ -0.81
USP54-203ENST00000418501 ERICH2A1L162 156 aa9.96□□□□□ -0.81
USP54-203ENST00000418501 ZNF804AQ7Z570 1209 aa9.96□□□□□ -0.81
USP54-203ENST00000418501 NEK1Q96PY6 1258 aa9.96□□□□□ -0.81
USP54-203ENST00000418501 RPAP1Q9BWH6 1393 aaPredicted RBP9.96□□□□□ -0.81
USP54-203ENST00000418501 ZMYM1Q5SVZ6 1142 aa9.96□□□□□ -0.82
USP54-203ENST00000418501 LEMD3Q9Y2U8 911 aa9.96□□□□□ -0.82
USP54-203ENST00000418501 PARP3Q9Y6F1 533 aa9.96□□□□□ -0.82
USP54-203ENST00000418501 ANKIB1Q9P2G1 1089 aa9.96□□□□□ -0.82
USP54-203ENST00000418501 APBA3O96018 575 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 PUS3Q9BZE2 481 aaKnown RBP9.95□□□□□ -0.82
USP54-203ENST00000418501 STK32BQ9NY57 414 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 RAI14Q9P0K7 980 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 SHANK3Q9BYB0 1731 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 ZNF213O14771 459 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 RUFY3Q7L099 469 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 FAM184AQ8NB25 1140 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 SPATA5Q8NB90 893 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 SNRKQ9NRH2 765 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 SNX14Q9Y5W7 946 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 ITGB4P16144 1822 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 ERFEQ4G0M1 354 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 L1TD1Q5T7N2 865 aaKnown RBP9.95□□□□□ -0.82
USP54-203ENST00000418501 ARHGEF1Q92888 912 aaKnown RBP9.95□□□□□ -0.82
USP54-203ENST00000418501 CNNM2Q9H8M5 875 aa9.95□□□□□ -0.82
USP54-203ENST00000418501 TLR7Q9NYK1 1049 aaKnown RBP9.95□□□□□ -0.82
USP54-203ENST00000418501 SLC9C2Q5TAH2 1124 aa9.94□□□□□ -0.82
USP54-203ENST00000418501 CCDC102BQ68D86 513 aa9.94□□□□□ -0.82
USP54-203ENST00000418501 IL17RAQ96F46 866 aa9.94□□□□□ -0.82
USP54-203ENST00000418501 NAP1L2Q9ULW6 460 aaPredicted RBP9.94□□□□□ -0.82
USP54-203ENST00000418501 TOGARAM1Q9Y4F4 1720 aa9.94□□□□□ -0.82
USP54-203ENST00000418501 UBN2Q6ZU65 1347 aa9.94□□□□□ -0.82
USP54-203ENST00000418501 BBOX1O75936 387 aa9.94□□□□□ -0.82
USP54-203ENST00000418501 PDE6BP35913 854 aa9.94□□□□□ -0.82
USP54-203ENST00000418501 CHRNDQ07001 517 aa9.94□□□□□ -0.82
USP54-203ENST00000418501 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.94□□□□□ -0.82
USP54-203ENST00000418501 SLC27A2O14975 620 aa9.94□□□□□ -0.82
USP54-203ENST00000418501 TRIM37O94972 964 aa9.94□□□□□ -0.82
USP54-203ENST00000418501 ARID4AP29374 1257 aaPredicted RBP9.94□□□□□ -0.82
USP54-203ENST00000418501 ALDH1B1P30837 517 aa9.94□□□□□ -0.82
USP54-203ENST00000418501 TMX3Q96JJ7 454 aa9.94□□□□□ -0.82
USP54-203ENST00000418501 CDKL5O76039 1030 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 ATP2B4P23634 1241 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 HMGN5P82970 282 aaKnown RBP9.93□□□□□ -0.82
USP54-203ENST00000418501 NCOA7Q8NI08 942 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 ZNF287Q9HBT7 754 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 TSGA10IPQ3SY00 556 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 WDR66Q8TBY9 1149 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 NAPBQ9H115 298 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 ALDH8A1Q9H2A2 487 aaPredicted RBP9.93□□□□□ -0.82
USP54-203ENST00000418501 PLSCR1O15162 318 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 HIBADHP31937 336 aaKnown RBP9.93□□□□□ -0.82
USP54-203ENST00000418501 NOL8Q76FK4 1167 aaKnown RBP9.93□□□□□ -0.82
USP54-203ENST00000418501 FAM227BQ96M60 508 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 ZSWIM6Q9HCJ5 1215 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 ISY1Q9ULR0 285 aaKnown RBP9.93□□□□□ -0.82
USP54-203ENST00000418501 TAF5LO75529 589 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 TBC1D9BQ66K14 1250 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 EYA3Q99504 573 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 KRT23Q9C075 422 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 FOXD4L1Q9NU39 408 aa9.93□□□□□ -0.82
USP54-203ENST00000418501 CPLX1O14810 134 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 BAG3O95817 575 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 ZAP70P43403 619 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 BAG6P46379 1132 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 GRAPQ13588 217 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 TXNRD1Q16881 649 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 GRAPLQ8TC17 118 aaPredicted RBP9.92□□□□□ -0.82
USP54-203ENST00000418501 UPF3BQ9BZI7 483 aaKnown RBP9.92□□□□□ -0.82
USP54-203ENST00000418501 ZNF831Q5JPB2 1677 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 H3BQV1 296 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 TDO2P48775 406 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 CCDC178Q5BJE1 867 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 IFFO2Q5TF58 517 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 XDHP47989 1333 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 A0A0D9SFI3 127 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 GOLGA6L4A6NEF3 574 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 MBD3O95983 291 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 SERPINB2P05120 415 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 RPS6KB1P23443 525 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 MCM5P33992 734 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 DHX32Q7L7V1 743 aaKnown RBP9.92□□□□□ -0.82
USP54-203ENST00000418501 TMTC2Q8N394 836 aa9.92□□□□□ -0.82
USP54-203ENST00000418501 PLCG2P16885 1265 aa9.91□□□□□ -0.82
USP54-203ENST00000418501 MCM4P33991 863 aa9.91□□□□□ -0.82
USP54-203ENST00000418501 CRNKL1Q9BZJ0 848 aaKnown RBP9.91□□□□□ -0.82
USP54-203ENST00000418501 MED23Q9ULK4 1368 aa9.91□□□□□ -0.82
USP54-203ENST00000418501 NECTIN1Q15223 517 aa9.91□□□□□ -0.82
USP54-203ENST00000418501 DZIP1Q86YF9 867 aaKnown RBP9.91□□□□□ -0.82
USP54-203ENST00000418501 KCNB2Q92953 911 aa9.91□□□□□ -0.82
USP54-203ENST00000418501 ABCF2Q9UG63 623 aa9.91□□□□□ -0.82
USP54-203ENST00000418501 CICQ96RK0 1608 aaPredicted RBP9.91□□□□□ -0.82
USP54-203ENST00000418501 PCP11498 1178 aaKnown RBP9.91□□□□□ -0.82
USP54-203ENST00000418501 RAB3GAP1Q15042 981 aa9.91□□□□□ -0.82
USP54-203ENST00000418501 GRIPAP1Q4V328 841 aa9.91□□□□□ -0.82
USP54-203ENST00000418501 NUP188Q5SRE5 1749 aa9.91□□□□□ -0.82
USP54-203ENST00000418501 TBC1D22AQ8WUA7 517 aa9.91□□□□□ -0.82
USP54-203ENST00000418501 TOMM22Q9NS69 142 aa9.91□□□□□ -0.82
USP54-203ENST00000418501 PDS5AQ29RF7 1337 aaKnown RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms