RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 TAOK3Q9H2K8 898 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 IL1RAPL2Q9NP60 686 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 RIPOR2Q9Y4F9 1068 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 MYH13Q9UKX3 1938 aa10.4□□□□□ -0.74
TRIM48-201ENST00000417545 IGHDP01880 384 aa10.4□□□□□ -0.75
TRIM48-201ENST00000417545 FKBP4Q02790 459 aaKnown RBP eCLIP10.4□□□□□ -0.75
TRIM48-201ENST00000417545 UBE4AQ14139 1066 aa10.4□□□□□ -0.75
TRIM48-201ENST00000417545 OLFM4Q6UX06 510 aa10.4□□□□□ -0.75
TRIM48-201ENST00000417545 AACSQ86V21 672 aa10.4□□□□□ -0.75
TRIM48-201ENST00000417545 ZC3H12CQ9C0D7 883 aaKnown RBP10.4□□□□□ -0.75
TRIM48-201ENST00000417545 ARAP2Q8WZ64 1704 aa10.4□□□□□ -0.75
TRIM48-201ENST00000417545 FER1L6Q2WGJ9 1857 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 ZNF609O15014 1411 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 PITPNM1O00562 1244 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 RIMBP2O15034 1052 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 PPIP5K2O43314 1243 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 GRIN3BO60391 1043 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 SASH1O94885 1247 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 WASHC4Q2M389 1173 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 TNNI3KQ59H18 835 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 ZNF804AQ7Z570 1209 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 TBC1D16Q8TBP0 767 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 LPIN2Q92539 896 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 GNL3LQ9NVN8 582 aaKnown RBP10.39□□□□□ -0.75
TRIM48-201ENST00000417545 PODXL2Q9NZ53 605 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 FPGT-TNNI3KV9GXZ4 949 aa10.39□□□□□ -0.75
TRIM48-201ENST00000417545 CCDC88AQ3V6T2 1871 aa10.38□□□□□ -0.75
TRIM48-201ENST00000417545 A0A1B0GUL7 405 aa10.38□□□□□ -0.75
TRIM48-201ENST00000417545 SMARCA5O60264 1052 aaPredicted RBP10.38□□□□□ -0.75
TRIM48-201ENST00000417545 CCDC158Q5M9N0 1113 aa10.38□□□□□ -0.75
TRIM48-201ENST00000417545 TTC39AQ5SRH9 613 aa10.38□□□□□ -0.75
TRIM48-201ENST00000417545 SMC5Q8IY18 1101 aa10.38□□□□□ -0.75
TRIM48-201ENST00000417545 LARGE2Q8N3Y3 721 aa10.38□□□□□ -0.75
TRIM48-201ENST00000417545 FBXW7Q969H0 707 aa10.38□□□□□ -0.75
TRIM48-201ENST00000417545 PSMD1Q99460 953 aa10.38□□□□□ -0.75
TRIM48-201ENST00000417545 LNPKQ9C0E8 428 aa10.38□□□□□ -0.75
TRIM48-201ENST00000417545 CCDC8Q9H0W5 538 aaPredicted RBP10.38□□□□□ -0.75
TRIM48-201ENST00000417545 GPR108Q9NPR9 543 aa10.38□□□□□ -0.75
TRIM48-201ENST00000417545 MED23Q9ULK4 1368 aa10.37□□□□□ -0.75
TRIM48-201ENST00000417545 IARSP41252 1262 aaKnown RBP10.37□□□□□ -0.75
TRIM48-201ENST00000417545 FXR2P51116 673 aaKnown RBP eCLIP10.37□□□□□ -0.75
TRIM48-201ENST00000417545 TIMM10P62072 90 aa10.37□□□□□ -0.75
TRIM48-201ENST00000417545 RASSF7Q02833 373 aa10.37□□□□□ -0.75
TRIM48-201ENST00000417545 SLC51AQ86UW1 340 aa10.37□□□□□ -0.75
TRIM48-201ENST00000417545 CHD1LQ86WJ1 897 aa10.37□□□□□ -0.75
TRIM48-201ENST00000417545 NIM1KQ8IY84 436 aa10.37□□□□□ -0.75
TRIM48-201ENST00000417545 JDP2Q8WYK2 163 aa10.37□□□□□ -0.75
TRIM48-201ENST00000417545 GPR101Q96P66 508 aaPredicted RBP10.37□□□□□ -0.75
TRIM48-201ENST00000417545 ZNF277Q9NRM2 450 aaPredicted RBP10.37□□□□□ -0.75
TRIM48-201ENST00000417545 LTBP1Q14766 1721 aa10.37□□□□□ -0.75
TRIM48-201ENST00000417545 SNAP23O00161 211 aa10.36□□□□□ -0.75
TRIM48-201ENST00000417545 YBX3P16989 372 aaKnown RBP eCLIP10.36□□□□□ -0.75
TRIM48-201ENST00000417545 HIBADHP31937 336 aaKnown RBP10.36□□□□□ -0.75
TRIM48-201ENST00000417545 NUCB1Q02818 461 aa10.36□□□□□ -0.75
TRIM48-201ENST00000417545 EVX2Q03828 476 aa10.36□□□□□ -0.75
TRIM48-201ENST00000417545 AOC3Q16853 763 aa10.36□□□□□ -0.75
TRIM48-201ENST00000417545 VGLL2Q8N8G2 317 aa10.36□□□□□ -0.75
TRIM48-201ENST00000417545 C7orf43Q8WVR3 580 aa10.36□□□□□ -0.75
TRIM48-201ENST00000417545 XAGE2Q96GT9 111 aa10.36□□□□□ -0.75
TRIM48-201ENST00000417545 POLLQ9UGP5 575 aa10.36□□□□□ -0.75
TRIM48-201ENST00000417545 ZBTB12Q9Y330 459 aaPredicted RBP10.36□□□□□ -0.75
TRIM48-201ENST00000417545 CHD4Q14839 1912 aa10.36□□□□□ -0.75
TRIM48-201ENST00000417545 DUOX1Q9NRD9 1551 aa10.36□□□□□ -0.75
TRIM48-201ENST00000417545 UQCRFS1P1P0C7P4 283 aa10.35□□□□□ -0.75
TRIM48-201ENST00000417545 GYG1P46976 350 aa10.35□□□□□ -0.75
TRIM48-201ENST00000417545 DOK7Q18PE1 504 aa10.35□□□□□ -0.75
TRIM48-201ENST00000417545 DBNDD2Q9BQY9 259 aa10.35□□□□□ -0.75
TRIM48-201ENST00000417545 RTFDC1Q9BY42 306 aaPredicted RBP10.35□□□□□ -0.75
TRIM48-201ENST00000417545 VPS33BQ9H267 617 aa10.35□□□□□ -0.75
TRIM48-201ENST00000417545 TIAM2Q8IVF5 1701 aa10.35□□□□□ -0.75
TRIM48-201ENST00000417545 LTBP3Q9NS15 1303 aa10.35□□□□□ -0.75
TRIM48-201ENST00000417545 NFKBIEO00221 500 aa10.34□□□□□ -0.75
TRIM48-201ENST00000417545 ERC2O15083 957 aa10.34□□□□□ -0.75
TRIM48-201ENST00000417545 LMNB1P20700 586 aa10.34□□□□□ -0.75
TRIM48-201ENST00000417545 FGFR2P21802 821 aa10.34□□□□□ -0.75
TRIM48-201ENST00000417545 ADORA1P30542 326 aa10.34□□□□□ -0.75
TRIM48-201ENST00000417545 KIAA2012Q0VF49 1180 aa10.34□□□□□ -0.75
TRIM48-201ENST00000417545 EAF2Q96CJ1 260 aaPredicted RBP10.34□□□□□ -0.75
TRIM48-201ENST00000417545 DBNDD1Q9H9R9 158 aa10.34□□□□□ -0.75
TRIM48-201ENST00000417545 RNF181Q9P0P0 153 aa10.34□□□□□ -0.75
TRIM48-201ENST00000417545 KDM2BQ8NHM5 1336 aa10.34□□□□□ -0.75
TRIM48-201ENST00000417545 DICER1Q9UPY3 1922 aaKnown RBP10.34□□□□□ -0.75
TRIM48-201ENST00000417545 ECE2O60344 883 aa10.33□□□□□ -0.76
TRIM48-201ENST00000417545 MX1P20591 662 aa10.33□□□□□ -0.76
TRIM48-201ENST00000417545 RGS3P49796 1198 aa10.33□□□□□ -0.76
TRIM48-201ENST00000417545 BCAMP50895 628 aa10.33□□□□□ -0.76
TRIM48-201ENST00000417545 EIF6P56537 245 aaKnown RBP10.33□□□□□ -0.76
TRIM48-201ENST00000417545 CHAF1AQ13111 956 aaPredicted RBP10.33□□□□□ -0.76
TRIM48-201ENST00000417545 COA1Q9GZY4 146 aa10.33□□□□□ -0.76
TRIM48-201ENST00000417545 TLR7Q9NYK1 1049 aaKnown RBP10.33□□□□□ -0.76
TRIM48-201ENST00000417545 DBNLQ9UJU6 430 aaKnown RBP10.33□□□□□ -0.76
TRIM48-201ENST00000417545 IQSEC3Q9UPP2 1182 aaPredicted RBP10.33□□□□□ -0.76
TRIM48-201ENST00000417545 KLRK1P26718 216 aa10.33□□□□□ -0.76
TRIM48-201ENST00000417545 PHKA1P46020 1223 aa10.33□□□□□ -0.76
TRIM48-201ENST00000417545 CCDC102BQ68D86 513 aa10.33□□□□□ -0.76
TRIM48-201ENST00000417545 C15orf52Q6ZUT6 534 aaKnown RBP10.33□□□□□ -0.76
TRIM48-201ENST00000417545 DNAJC2Q99543 621 aaKnown RBP10.33□□□□□ -0.76
TRIM48-201ENST00000417545 ECHDC1Q9NTX5 307 aa10.33□□□□□ -0.76
TRIM48-201ENST00000417545 DENND2AQ9ULE3 1009 aa10.33□□□□□ -0.76
TRIM48-201ENST00000417545 SBF1O95248 1867 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms