RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 TOP2BQ02880 1626 aa13.67□□□□□ -0.22
UBR4-205ENST00000417040 A0A1B0GUL7 405 aa13.67□□□□□ -0.22
UBR4-205ENST00000417040 KIF5BP33176 963 aa13.67□□□□□ -0.22
UBR4-205ENST00000417040 BICD1Q96G01 975 aa13.67□□□□□ -0.22
UBR4-205ENST00000417040 PLEKHA4Q9H4M7 779 aa13.67□□□□□ -0.22
UBR4-205ENST00000417040 AKNAD1Q5T1N1 836 aa13.67□□□□□ -0.22
UBR4-205ENST00000417040 FEZ1Q99689 392 aa13.67□□□□□ -0.22
UBR4-205ENST00000417040 CEP85Q6P2H3 762 aa13.66□□□□□ -0.22
UBR4-205ENST00000417040 CCDC50Q8IVM0 306 aa13.66□□□□□ -0.22
UBR4-205ENST00000417040 AFAP1L1Q8TED9 768 aa13.66□□□□□ -0.22
UBR4-205ENST00000417040 RASAL2Q9UJF2 1139 aa13.66□□□□□ -0.22
UBR4-205ENST00000417040 PPM1EQ8WY54 764 aa13.66□□□□□ -0.22
UBR4-205ENST00000417040 ATP8B2P98198 1209 aa13.66□□□□□ -0.22
UBR4-205ENST00000417040 GRIPAP1Q4V328 841 aa13.66□□□□□ -0.22
UBR4-205ENST00000417040 ZKSCAN3Q9BRR0 538 aa13.66□□□□□ -0.22
UBR4-205ENST00000417040 KRT86O43790 486 aa13.66□□□□□ -0.22
UBR4-205ENST00000417040 ZBTB16Q05516 673 aa13.66□□□□□ -0.22
UBR4-205ENST00000417040 MRRFQ96E11 262 aaKnown RBP13.66□□□□□ -0.22
UBR4-205ENST00000417040 CCDC42Q96M95 316 aa13.66□□□□□ -0.22
UBR4-205ENST00000417040 STX8Q9UNK0 236 aa13.66□□□□□ -0.22
UBR4-205ENST00000417040 KRT83P78385 493 aa13.65□□□□□ -0.22
UBR4-205ENST00000417040 PLS1Q14651 629 aa13.65□□□□□ -0.22
UBR4-205ENST00000417040 MYRIPQ8NFW9 859 aa13.65□□□□□ -0.22
UBR4-205ENST00000417040 ZPR1O75312 459 aa13.65□□□□□ -0.22
UBR4-205ENST00000417040 TBCAO75347 108 aaKnown RBP13.65□□□□□ -0.22
UBR4-205ENST00000417040 SPATA24Q86W54 205 aa13.65□□□□□ -0.22
UBR4-205ENST00000417040 ERO1AQ96HE7 468 aa13.65□□□□□ -0.22
UBR4-205ENST00000417040 PDE4BQ07343 736 aa13.65□□□□□ -0.22
UBR4-205ENST00000417040 SEC62Q99442 399 aaKnown RBP13.65□□□□□ -0.22
UBR4-205ENST00000417040 NOS1P29475 1434 aa13.65□□□□□ -0.22
UBR4-205ENST00000417040 CCDC141Q6ZP82 1450 aa13.65□□□□□ -0.22
UBR4-205ENST00000417040 SCAF11Q99590 1463 aaKnown RBP13.65□□□□□ -0.22
UBR4-205ENST00000417040 THEMISQ8N1K5 641 aaPredicted RBP13.65□□□□□ -0.22
UBR4-205ENST00000417040 CBX8Q9HC52 389 aa13.65□□□□□ -0.22
UBR4-205ENST00000417040 EEF2P13639 858 aaKnown RBP13.65□□□□□ -0.22
UBR4-205ENST00000417040 CCDC122Q5T0U0 273 aa13.65□□□□□ -0.22
UBR4-205ENST00000417040 KCNH5Q8NCM2 988 aa13.65□□□□□ -0.22
UBR4-205ENST00000417040 IQCGQ9H095 443 aaKnown RBP13.65□□□□□ -0.22
UBR4-205ENST00000417040 AMOTQ4VCS5 1084 aa13.64□□□□□ -0.23
UBR4-205ENST00000417040 CHMLP26374 656 aa13.64□□□□□ -0.23
UBR4-205ENST00000417040 NESP48681 1621 aa13.64□□□□□ -0.23
UBR4-205ENST00000417040 TSPY3P0CV98 308 aa13.64□□□□□ -0.23
UBR4-205ENST00000417040 TSPY8P0CW00 308 aa13.64□□□□□ -0.23
UBR4-205ENST00000417040 CYP7A1P22680 504 aa13.64□□□□□ -0.23
UBR4-205ENST00000417040 VPS16Q9H269 839 aa13.64□□□□□ -0.23
UBR4-205ENST00000417040 MAPK8IP1Q9UQF2 711 aa13.64□□□□□ -0.23
UBR4-205ENST00000417040 MAPKBP1O60336 1514 aa13.64□□□□□ -0.23
UBR4-205ENST00000417040 AKR1B15C9JRZ8 316 aaPredicted RBP13.64□□□□□ -0.23
UBR4-205ENST00000417040 SLC39A6Q13433 755 aa13.64□□□□□ -0.23
UBR4-205ENST00000417040 PYM1Q9BRP8 204 aaKnown RBP13.64□□□□□ -0.23
UBR4-205ENST00000417040 RPRD2Q5VT52 1461 aaKnown RBP13.64□□□□□ -0.23
UBR4-205ENST00000417040 WASLO00401 505 aaPredicted RBP13.64□□□□□ -0.23
UBR4-205ENST00000417040 PSMA7O14818 248 aa13.64□□□□□ -0.23
UBR4-205ENST00000417040 VIMP08670 466 aaKnown RBP13.64□□□□□ -0.23
UBR4-205ENST00000417040 ZRANB1Q9UGI0 708 aa13.64□□□□□ -0.23
UBR4-205ENST00000417040 DPH6Q7L8W6 267 aa13.63□□□□□ -0.23
UBR4-205ENST00000417040 TMOD2Q9NZR1 351 aa13.63□□□□□ -0.23
UBR4-205ENST00000417040 IL16Q14005 1332 aa13.63□□□□□ -0.23
UBR4-205ENST00000417040 FERP16591 822 aa13.63□□□□□ -0.23
UBR4-205ENST00000417040 OAS2P29728 719 aaKnown RBP13.63□□□□□ -0.23
UBR4-205ENST00000417040 PAG1Q9NWQ8 432 aa13.63□□□□□ -0.23
UBR4-205ENST00000417040 MYCNP04198 464 aaPredicted RBP13.63□□□□□ -0.23
UBR4-205ENST00000417040 WDR78Q5VTH9 848 aa13.63□□□□□ -0.23
UBR4-205ENST00000417040 GDAP1L1Q96MZ0 367 aa13.63□□□□□ -0.23
UBR4-205ENST00000417040 ZNF652Q9Y2D9 606 aa13.63□□□□□ -0.23
UBR4-205ENST00000417040 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.63□□□□□ -0.23
UBR4-205ENST00000417040 CFAP58Q5T655 872 aa13.63□□□□□ -0.23
UBR4-205ENST00000417040 KRT23Q9C075 422 aa13.63□□□□□ -0.23
UBR4-205ENST00000417040 SYNCQ9H7C4 482 aa13.63□□□□□ -0.23
UBR4-205ENST00000417040 MSH6P52701 1360 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 ERCC3P19447 782 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 KRT2P35908 639 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 ZNF75DP51815 510 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 DAAM2Q86T65 1068 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 NEK11Q8NG66 645 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 RSRC1Q96IZ7 334 aaKnown RBP13.62□□□□□ -0.23
UBR4-205ENST00000417040 TSNARE1Q96NA8 513 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 SAMD15Q9P1V8 674 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 ASXL1Q8IXJ9 1541 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 SLC9C2Q5TAH2 1124 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 FBXO31Q5XUX0 539 aaPredicted RBP13.62□□□□□ -0.23
UBR4-205ENST00000417040 MIGA1Q8NAN2 632 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 XAGE3Q8WTP9 111 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 PSMB7Q99436 277 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 CALM1P0DP23 149 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 CALM2P0DP24 149 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 CALM3P0DP25 149 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 TFCP2Q12800 502 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 ZNF174Q15697 407 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 CWF19L2Q2TBE0 894 aaKnown RBP13.62□□□□□ -0.23
UBR4-205ENST00000417040 CABP5Q9NP86 173 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 ARHGAP45Q92619 1136 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 ZBTB40Q9NUA8 1239 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 CEP83Q9Y592 693 aa13.62□□□□□ -0.23
UBR4-205ENST00000417040 PPP1R7Q15435 360 aa13.61□□□□□ -0.23
UBR4-205ENST00000417040 ANKRD13DQ6ZTN6 518 aa13.61□□□□□ -0.23
UBR4-205ENST00000417040 BCL2L12Q9HB09 334 aa13.61□□□□□ -0.23
UBR4-205ENST00000417040 NAPAP54920 295 aa13.61□□□□□ -0.23
UBR4-205ENST00000417040 RAPGEF1Q13905 1077 aa13.61□□□□□ -0.23
UBR4-205ENST00000417040 CCDC174Q6PII3 467 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms