RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 SNX21Q969T3 373 aa11.21□□□□□ -0.62
SNHG3-201ENST00000413987 CEP126Q9P2H0 1117 aa11.21□□□□□ -0.62
SNHG3-201ENST00000413987 SPATA31A1Q5TZJ5 1347 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 PRAMEF22A3QJZ6 481 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 BTBD11A6QL63 1104 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 HTATSF1O43719 755 aaKnown RBP11.2□□□□□ -0.62
SNHG3-201ENST00000413987 DNAJC6O75061 913 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 TTC39BQ5VTQ0 682 aaPredicted RBP11.2□□□□□ -0.62
SNHG3-201ENST00000413987 PANK1Q8TE04 598 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 NEUROD6Q96NK8 337 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 BEGAINQ9BUH8 593 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 LDHAP00338 332 aaKnown RBP11.2□□□□□ -0.62
SNHG3-201ENST00000413987 DDIT3P35638 169 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 POU5F1BQ06416 359 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 FAM98CQ17RN3 349 aaKnown RBP11.2□□□□□ -0.62
SNHG3-201ENST00000413987 TMEM164Q5U3C3 297 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 MYSM1Q5VVJ2 828 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 SMAP1Q8IYB5 467 aaPredicted RBP11.2□□□□□ -0.62
SNHG3-201ENST00000413987 TSC1Q92574 1164 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 C8orf48Q96LL4 319 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 OSBPL2Q9H1P3 480 aa11.2□□□□□ -0.62
SNHG3-201ENST00000413987 IBTKQ9P2D0 1353 aaPredicted RBP11.2□□□□□ -0.62
SNHG3-201ENST00000413987 PDGFRBP09619 1106 aa11.19□□□□□ -0.62
SNHG3-201ENST00000413987 PYGBP11216 843 aa11.19□□□□□ -0.62
SNHG3-201ENST00000413987 RLBP1P12271 317 aa11.19□□□□□ -0.62
SNHG3-201ENST00000413987 UNC5CLQ8IV45 518 aa11.19□□□□□ -0.62
SNHG3-201ENST00000413987 USP21Q9UK80 565 aa11.19□□□□□ -0.62
SNHG3-201ENST00000413987 TTF2Q9UNY4 1162 aaKnown RBP11.19□□□□□ -0.62
SNHG3-201ENST00000413987 SPATA31A6Q5VVP1 1343 aa11.19□□□□□ -0.62
SNHG3-201ENST00000413987 PCDH11XQ9BZA7 1347 aa11.19□□□□□ -0.62
SNHG3-201ENST00000413987 PCDH11YQ9BZA8 1340 aa11.19□□□□□ -0.62
SNHG3-201ENST00000413987 USP5P45974 858 aa11.19□□□□□ -0.62
SNHG3-201ENST00000413987 RASSF7Q02833 373 aa11.19□□□□□ -0.62
SNHG3-201ENST00000413987 PPP1R18Q6NYC8 613 aa11.19□□□□□ -0.62
SNHG3-201ENST00000413987 MPHOSPH6Q99547 160 aaKnown RBP11.19□□□□□ -0.62
SNHG3-201ENST00000413987 CRISPLD2Q9H0B8 497 aa11.19□□□□□ -0.62
SNHG3-201ENST00000413987 SPATA31A5Q5VU36 1347 aa11.18□□□□□ -0.62
SNHG3-201ENST00000413987 SPATA31A7Q8IWB4 1347 aa11.18□□□□□ -0.62
SNHG3-201ENST00000413987 DISP2A7MBM2 1401 aa11.18□□□□□ -0.62
SNHG3-201ENST00000413987 A0A0G2JS52 829 aa11.18□□□□□ -0.62
SNHG3-201ENST00000413987 GOLGA6L22H0YM25 854 aa11.18□□□□□ -0.62
SNHG3-201ENST00000413987 NASPP49321 788 aaPredicted RBP11.18□□□□□ -0.62
SNHG3-201ENST00000413987 CLK2P49760 499 aaKnown RBP11.18□□□□□ -0.62
SNHG3-201ENST00000413987 HIC1Q14526 733 aa11.18□□□□□ -0.62
SNHG3-201ENST00000413987 ODR4Q5SWX8 454 aa11.18□□□□□ -0.62
SNHG3-201ENST00000413987 METTL16Q86W50 562 aaKnown RBP11.18□□□□□ -0.62
SNHG3-201ENST00000413987 NOB1Q9ULX3 412 aaKnown RBP11.18□□□□□ -0.62
SNHG3-201ENST00000413987 SSUH2Q9Y2M2 353 aa11.18□□□□□ -0.62
SNHG3-201ENST00000413987 SCN11AQ9UI33 1791 aa11.18□□□□□ -0.62
SNHG3-201ENST00000413987 FGAP02671 866 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 DNAJA1P31689 397 aaKnown RBP11.17□□□□□ -0.62
SNHG3-201ENST00000413987 PDE6BP35913 854 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 RAB3GAP1Q15042 981 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 FAM182BQ5T319 152 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 LDLRAD1Q5T700 205 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 CCDC174Q6PII3 467 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 GAS2L3Q86XJ1 694 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 TTC30BQ8N4P2 665 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 TNPO1Q92973 898 aaKnown RBP11.17□□□□□ -0.62
SNHG3-201ENST00000413987 UCN2Q96RP3 112 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 SLC52A2Q9HAB3 445 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 AFF2P51816 1311 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 KAT6BQ8WYB5 2073 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 VIL1P09327 827 aaKnown RBP11.17□□□□□ -0.62
SNHG3-201ENST00000413987 MRPL58Q14197 206 aaKnown RBP11.17□□□□□ -0.62
SNHG3-201ENST00000413987 NBPF9Q3BBW0 867 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 SNRNP27Q8WVK2 155 aaKnown RBP11.17□□□□□ -0.62
SNHG3-201ENST00000413987 DCAF5Q96JK2 942 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 TMUB1Q9BVT8 246 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 PCDHB15Q9Y5E8 787 aa11.17□□□□□ -0.62
SNHG3-201ENST00000413987 NWD2Q9ULI1 1742 aa11.16□□□□□ -0.62
SNHG3-201ENST00000413987 TOGARAM1Q9Y4F4 1720 aa11.16□□□□□ -0.62
SNHG3-201ENST00000413987 APPP05067 770 aa11.16□□□□□ -0.62
SNHG3-201ENST00000413987 EIF2S2P20042 333 aaKnown RBP11.16□□□□□ -0.62
SNHG3-201ENST00000413987 DRC7Q8IY82 874 aa11.16□□□□□ -0.62
SNHG3-201ENST00000413987 STK32AQ8WU08 396 aa11.16□□□□□ -0.62
SNHG3-201ENST00000413987 CDC5LQ99459 802 aaKnown RBP11.16□□□□□ -0.62
SNHG3-201ENST00000413987 PUF60Q9UHX1 559 aaKnown RBP11.16□□□□□ -0.62
SNHG3-201ENST00000413987 ADAMTS7Q9UKP4 1686 aa11.16□□□□□ -0.62
SNHG3-201ENST00000413987 SIPA1L3O60292 1781 aaPredicted RBP11.16□□□□□ -0.62
SNHG3-201ENST00000413987 TIMM44O43615 452 aa11.16□□□□□ -0.62
SNHG3-201ENST00000413987 ANXA1P04083 346 aa11.16□□□□□ -0.62
SNHG3-201ENST00000413987 TRIM27P14373 513 aa11.16□□□□□ -0.62
SNHG3-201ENST00000413987 SSTR3P32745 418 aaPredicted RBP11.16□□□□□ -0.62
SNHG3-201ENST00000413987 CABP4P57796 275 aa11.16□□□□□ -0.62
SNHG3-201ENST00000413987 EIF4A1P60842 406 aaKnown RBP11.16□□□□□ -0.62
SNHG3-201ENST00000413987 CCSAPQ6IQ19 270 aaPredicted RBP11.16□□□□□ -0.62
SNHG3-201ENST00000413987 SYTL4Q96C24 671 aaPredicted RBP11.16□□□□□ -0.62
SNHG3-201ENST00000413987 ZHX3Q9H4I2 956 aa11.16□□□□□ -0.62
SNHG3-201ENST00000413987 CASS4Q9NQ75 786 aa11.16□□□□□ -0.62
SNHG3-201ENST00000413987 KDM3BQ7LBC6 1761 aa11.15□□□□□ -0.62
SNHG3-201ENST00000413987 WNK3Q9BYP7 1800 aa11.15□□□□□ -0.62
SNHG3-201ENST00000413987 BICDL2A1A5D9 508 aa11.15□□□□□ -0.62
SNHG3-201ENST00000413987 DYNC1I1O14576 645 aa11.15□□□□□ -0.62
SNHG3-201ENST00000413987 FAM200BP0CF97 657 aa11.15□□□□□ -0.62
SNHG3-201ENST00000413987 AMPD3Q01432 767 aa11.15□□□□□ -0.62
SNHG3-201ENST00000413987 MRPL50Q8N5N7 158 aaKnown RBP11.15□□□□□ -0.62
SNHG3-201ENST00000413987 MCM5P33992 734 aa11.15□□□□□ -0.63
SNHG3-201ENST00000413987 PIP4K2AP48426 406 aaPredicted RBP11.15□□□□□ -0.63
SNHG3-201ENST00000413987 SEMA3FQ13275 785 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms