RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ZNF397Q8NF99 534 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 BRF1Q92994 677 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 RTEL1Q9NZ71 1219 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 CCDC9Q9Y3X0 531 aaKnown RBP6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 FPGT-TNNI3KV9GXZ4 949 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 FAM237AA0A1B0GTK4 181 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 CCP110O43303 1012 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 YEATS4O95619 227 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 CASP7P55210 303 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 CEP135Q66GS9 1140 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 DHX40Q8IX18 779 aaKnown RBP6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 DHX37Q8IY37 1157 aaKnown RBP6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 CCDC150Q8NCX0 1101 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 RNF25Q96BH1 459 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 TIGD1Q96MW7 591 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 PA2G4Q9UQ80 394 aaKnown RBP6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 GOLGA6L19H0YKK7 550 aa6.71□□□□□ -1.33
CCDC88A-203ENST00000412148 CYP21A2P08686 494 aa6.71□□□□□ -1.33
CCDC88A-203ENST00000412148 PTPN12Q05209 780 aaKnown RBP6.71□□□□□ -1.33
CCDC88A-203ENST00000412148 PROSER3Q2NL68 480 aa6.71□□□□□ -1.33
CCDC88A-203ENST00000412148 CWF19L2Q2TBE0 894 aaKnown RBP6.71□□□□□ -1.33
CCDC88A-203ENST00000412148 SPC24Q8NBT2 197 aa6.71□□□□□ -1.33
CCDC88A-203ENST00000412148 KIF18AQ8NI77 898 aa6.71□□□□□ -1.33
CCDC88A-203ENST00000412148 POLR3EQ9NVU0 708 aa6.71□□□□□ -1.33
CCDC88A-203ENST00000412148 DBNLQ9UJU6 430 aaKnown RBP6.71□□□□□ -1.33
CCDC88A-203ENST00000412148 LRP6O75581 1613 aa6.71□□□□□ -1.33
CCDC88A-203ENST00000412148 IKBKBO14920 756 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 SOX12O15370 315 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 ATRNO75882 1429 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 SCRN1Q12765 414 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 CCDC144BQ3MJ40 725 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 ZMYM1Q5SVZ6 1142 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 CCDC73Q6ZRK6 1079 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 Q6ZUG5 572 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 FCHSD1Q86WN1 690 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 CCDC144CPQ8IYA2 1237 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 CEP57L1Q8IYX8 460 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 FMR1NBQ8N0W7 255 aaPredicted RBP6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 CCAR2Q8N163 923 aaKnown RBP6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 BICD2Q8TD16 824 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 DNAJC25Q9H1X3 360 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 NEDD4P46934 1319 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 CIAO1O76071 339 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 CTDNEP1O95476 244 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 CCDC93Q567U6 631 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 ZNF790Q6PG37 636 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 BRAPQ7Z569 592 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 PROM2Q8N271 834 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 LARP6Q9BRS8 491 aaKnown RBP6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 SLC52A2Q9HAB3 445 aa6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 TLR7Q9NYK1 1049 aaKnown RBP6.71□□□□□ -1.34
CCDC88A-203ENST00000412148 DCCP43146 1447 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 H3BQV1 296 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 ATP8B1O43520 1251 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 KINO60870 393 aaKnown RBP6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 LRMPQ12912 555 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 PTPN14Q15678 1187 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 CAMK4Q16566 473 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 IFFO2Q5TF58 517 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 FERMT3Q86UX7 667 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 CCAR1Q8IX12 1150 aaKnown RBP6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 CKAP2LQ8IYA6 745 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 KCNG4Q8TDN1 519 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 KCNV2Q8TDN2 545 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 BOLA2Q9H3K6 86 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 NRBP1Q9UHY1 535 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 H2AFXP16104 143 aaPredicted RBP6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 TPD52L1Q16890 204 aaPredicted RBP6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 LRRFIP1Q32MZ4 808 aaKnown RBP6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 MPRIPQ6WCQ1 1025 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 USHBP1Q8N6Y0 703 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 MRPS27Q92552 414 aaKnown RBP6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 SRRTQ9BXP5 876 aaKnown RBP6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 CCDC8Q9H0W5 538 aaPredicted RBP6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 TAF6LQ9Y6J9 622 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 DLEC1Q9Y238 1755 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 ERBB3P21860 1342 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 PHLPP2Q6ZVD8 1323 aa6.7□□□□□ -1.34
CCDC88A-203ENST00000412148 LRP5O75197 1615 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 NID2Q14112 1375 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 MYO5AQ9Y4I1 1855 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 BCORQ6W2J9 1755 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 KCPQ6ZWJ8 1503 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 JAK2O60674 1132 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 GCP02774 474 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 SKILP12757 684 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 C11orf57Q6ZUT1 292 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 NBPF11Q86T75 865 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 DRC7Q8IY82 874 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 KRT222Q8N1A0 295 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 ANKRD24Q8TF21 1146 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 C16orf45Q96MC5 204 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 NOL10Q9BSC4 688 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 TFIP11Q9UBB9 837 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 PTPDC1A2A3K4 754 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 CCDC69A6NI79 296 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 H7C1W4 665 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 DHX16O60231 1041 aaKnown RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms