RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 TNNI3KQ59H18 835 aa19.67■□□□□ 0.74
HMGA1-204ENST00000401473 C9orf131Q5VYM1 1079 aa19.67■□□□□ 0.74
HMGA1-204ENST00000401473 LPIN2Q92539 896 aa19.67■□□□□ 0.74
HMGA1-204ENST00000401473 LRRCC1Q9C099 1032 aa19.67■□□□□ 0.74
HMGA1-204ENST00000401473 FPGT-TNNI3KV9GXZ4 949 aa19.67■□□□□ 0.74
HMGA1-204ENST00000401473 B4GALNT3Q6L9W6 998 aa19.67■□□□□ 0.74
HMGA1-204ENST00000401473 ZC3H12CQ9C0D7 883 aaKnown RBP19.67■□□□□ 0.74
HMGA1-204ENST00000401473 GPR108Q9NPR9 543 aa19.67■□□□□ 0.74
HMGA1-204ENST00000401473 COL4A5P29400 1685 aa19.66■□□□□ 0.74
HMGA1-204ENST00000401473 ADORA1P30542 326 aa19.66■□□□□ 0.74
HMGA1-204ENST00000401473 KIAA2012Q0VF49 1180 aa19.66■□□□□ 0.74
HMGA1-204ENST00000401473 SUPT20HQ8NEM7 779 aa19.66■□□□□ 0.74
HMGA1-204ENST00000401473 FAM84BQ96KN1 310 aaPredicted RBP19.66■□□□□ 0.74
HMGA1-204ENST00000401473 RNF181Q9P0P0 153 aa19.66■□□□□ 0.74
HMGA1-204ENST00000401473 AKAP2Q9Y2D5 859 aa19.66■□□□□ 0.74
HMGA1-204ENST00000401473 CHD4Q14839 1912 aa19.66■□□□□ 0.74
HMGA1-204ENST00000401473 IARSP41252 1262 aaKnown RBP19.65■□□□□ 0.74
HMGA1-204ENST00000401473 GYG1P46976 350 aa19.65■□□□□ 0.74
HMGA1-204ENST00000401473 ANKRD45Q5TZF3 282 aa19.65■□□□□ 0.74
HMGA1-204ENST00000401473 C15orf52Q6ZUT6 534 aaKnown RBP19.65■□□□□ 0.74
HMGA1-204ENST00000401473 NEUROD6Q96NK8 337 aa19.65■□□□□ 0.74
HMGA1-204ENST00000401473 PPIP5K2O43314 1243 aa19.65■□□□□ 0.74
HMGA1-204ENST00000401473 BCAMP50895 628 aa19.65■□□□□ 0.74
HMGA1-204ENST00000401473 CCDC136Q96JN2 1154 aa19.65■□□□□ 0.74
HMGA1-204ENST00000401473 EYA3Q99504 573 aa19.65■□□□□ 0.74
HMGA1-204ENST00000401473 CCDC8Q9H0W5 538 aaPredicted RBP19.65■□□□□ 0.74
HMGA1-204ENST00000401473 PPP4R2Q9NY27 417 aa19.65■□□□□ 0.74
HMGA1-204ENST00000401473 KDM2BQ8NHM5 1336 aa19.64■□□□□ 0.74
HMGA1-204ENST00000401473 MED23Q9ULK4 1368 aa19.64■□□□□ 0.73
HMGA1-204ENST00000401473 IFIT1P09914 478 aaKnown RBP19.64■□□□□ 0.73
HMGA1-204ENST00000401473 DOK7Q18PE1 504 aa19.64■□□□□ 0.73
HMGA1-204ENST00000401473 C16orf71Q8IYS4 520 aaPredicted RBP19.64■□□□□ 0.73
HMGA1-204ENST00000401473 CLASRPQ8N2M8 674 aaKnown RBP19.64■□□□□ 0.73
HMGA1-204ENST00000401473 XAGE2Q96GT9 111 aa19.64■□□□□ 0.73
HMGA1-204ENST00000401473 VPS33BQ9H267 617 aa19.64■□□□□ 0.73
HMGA1-204ENST00000401473 TLR7Q9NYK1 1049 aaKnown RBP19.64■□□□□ 0.73
HMGA1-204ENST00000401473 SLC5A1P13866 664 aa19.63■□□□□ 0.73
HMGA1-204ENST00000401473 LARGE2Q8N3Y3 721 aa19.63■□□□□ 0.73
HMGA1-204ENST00000401473 DBNLQ9UJU6 430 aaKnown RBP19.63■□□□□ 0.73
HMGA1-204ENST00000401473 FBXO33Q7Z6M2 555 aa19.62■□□□□ 0.73
HMGA1-204ENST00000401473 AACSQ86V21 672 aa19.62■□□□□ 0.73
HMGA1-204ENST00000401473 DBNDD2Q9BQY9 259 aa19.62■□□□□ 0.73
HMGA1-204ENST00000401473 DBNDD1Q9H9R9 158 aa19.62■□□□□ 0.73
HMGA1-204ENST00000401473 KCNQ5Q9NR82 932 aa19.62■□□□□ 0.73
HMGA1-204ENST00000401473 ZNF609O15014 1411 aa19.62■□□□□ 0.73
HMGA1-204ENST00000401473 DICER1Q9UPY3 1922 aaKnown RBP19.61■□□□□ 0.73
HMGA1-204ENST00000401473 NUCB1Q02818 461 aa19.61■□□□□ 0.73
HMGA1-204ENST00000401473 YDJCA8MPS7 323 aa19.6■□□□□ 0.73
HMGA1-204ENST00000401473 HIBADHP31937 336 aaKnown RBP19.6■□□□□ 0.73
HMGA1-204ENST00000401473 PHKA1P46020 1223 aa19.6■□□□□ 0.73
HMGA1-204ENST00000401473 CD209Q9NNX6 404 aa19.6■□□□□ 0.73
HMGA1-204ENST00000401473 SCN9AQ15858 1988 aa19.6■□□□□ 0.73
HMGA1-204ENST00000401473 CAVIN4Q5BKX8 364 aa19.6■□□□□ 0.73
HMGA1-204ENST00000401473 CCDC102BQ68D86 513 aa19.6■□□□□ 0.73
HMGA1-204ENST00000401473 OTUD7AQ8TE49 926 aaPredicted RBP19.6■□□□□ 0.73
HMGA1-204ENST00000401473 LNPKQ9C0E8 428 aa19.6■□□□□ 0.73
HMGA1-204ENST00000401473 CHD1LQ86WJ1 897 aa19.59■□□□□ 0.73
HMGA1-204ENST00000401473 COA1Q9GZY4 146 aa19.59■□□□□ 0.73
HMGA1-204ENST00000401473 IQSEC3Q9UPP2 1182 aaPredicted RBP19.59■□□□□ 0.73
HMGA1-204ENST00000401473 ECE2O60344 883 aa19.58■□□□□ 0.73
HMGA1-204ENST00000401473 JDP2Q8WYK2 163 aa19.58■□□□□ 0.73
HMGA1-204ENST00000401473 FZD9O00144 591 aa19.58■□□□□ 0.72
HMGA1-204ENST00000401473 IFIT2P09913 472 aaKnown RBP19.58■□□□□ 0.72
HMGA1-204ENST00000401473 IL1R1P14778 569 aa19.58■□□□□ 0.72
HMGA1-204ENST00000401473 CENPQQ7L2Z9 268 aaPredicted RBP19.58■□□□□ 0.72
HMGA1-204ENST00000401473 ZNF804AQ7Z570 1209 aa19.58■□□□□ 0.72
HMGA1-204ENST00000401473 PODNQ7Z5L7 613 aa19.58■□□□□ 0.72
HMGA1-204ENST00000401473 VPS37DQ86XT2 251 aa19.58■□□□□ 0.72
HMGA1-204ENST00000401473 TDRD7Q8NHU6 1098 aaKnown RBP19.58■□□□□ 0.72
HMGA1-204ENST00000401473 ARAP2Q8WZ64 1704 aa19.58■□□□□ 0.72
HMGA1-204ENST00000401473 ZNRF3Q9ULT6 936 aa19.57■□□□□ 0.72
HMGA1-204ENST00000401473 GTF3C3Q9Y5Q9 886 aa19.57■□□□□ 0.72
HMGA1-204ENST00000401473 G3V3G9 751 aa19.56■□□□□ 0.72
HMGA1-204ENST00000401473 GORABQ5T7V8 394 aa19.56■□□□□ 0.72
HMGA1-204ENST00000401473 DCAF8Q5TAQ9 597 aa19.56■□□□□ 0.72
HMGA1-204ENST00000401473 NIM1KQ8IY84 436 aa19.56■□□□□ 0.72
HMGA1-204ENST00000401473 ZNF541Q9H0D2 1346 aa19.56■□□□□ 0.72
HMGA1-204ENST00000401473 SCARF1Q14162 830 aa19.56■□□□□ 0.72
HMGA1-204ENST00000401473 SALL3Q9BXA9 1300 aa19.55■□□□□ 0.72
HMGA1-204ENST00000401473 RAD17O75943 681 aa19.54■□□□□ 0.72
HMGA1-204ENST00000401473 CXCL9Q07325 125 aa19.54■□□□□ 0.72
HMGA1-204ENST00000401473 CCDC158Q5M9N0 1113 aa19.54■□□□□ 0.72
HMGA1-204ENST00000401473 TSHZ3Q63HK5 1081 aa19.54■□□□□ 0.72
HMGA1-204ENST00000401473 SKAP1Q86WV1 359 aa19.54■□□□□ 0.72
HMGA1-204ENST00000401473 JAG2Q9Y219 1238 aa19.54■□□□□ 0.72
HMGA1-204ENST00000401473 AKAP11Q9UKA4 1901 aa19.54■□□□□ 0.72
HMGA1-204ENST00000401473 PDE4AP27815 886 aa19.54■□□□□ 0.72
HMGA1-204ENST00000401473 RASGRF1Q13972 1273 aa19.54■□□□□ 0.72
HMGA1-204ENST00000401473 PI16Q6UXB8 463 aa19.54■□□□□ 0.72
HMGA1-204ENST00000401473 ZBTB47Q9UFB7 747 aaPredicted RBP19.54■□□□□ 0.72
HMGA1-204ENST00000401473 ZC3H4Q9UPT8 1303 aaKnown RBP19.53■□□□□ 0.72
HMGA1-204ENST00000401473 TIAM2Q8IVF5 1701 aa19.53■□□□□ 0.72
HMGA1-204ENST00000401473 ARID4AP29374 1257 aaPredicted RBP19.53■□□□□ 0.72
HMGA1-204ENST00000401473 MCAMP43121 646 aa19.53■□□□□ 0.72
HMGA1-204ENST00000401473 GTF2IP78347 998 aa19.53■□□□□ 0.72
HMGA1-204ENST00000401473 TTLL5Q6EMB2 1281 aa19.53■□□□□ 0.72
HMGA1-204ENST00000401473 FRAT2O75474 233 aaPredicted RBP19.52■□□□□ 0.72
HMGA1-204ENST00000401473 YY1P25490 414 aa19.52■□□□□ 0.72
HMGA1-204ENST00000401473 ZNF512BQ96KM6 892 aaPredicted RBP19.52■□□□□ 0.72
HMGA1-204ENST00000401473 MXD3Q9BW11 206 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms