RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 KIF5AQ12840 1032 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 RRP36Q96EU6 259 aaKnown RBP6.2□□□□□ -1.42
VPS13C-204ENST00000395898 ATP8B2P98198 1209 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 DTHD1Q6ZMT9 781 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 Q6ZUG5 572 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 HEATR3Q7Z4Q2 680 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 AKR1B10O60218 316 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 ANO6Q4KMQ2 910 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 INTS4Q96HW7 963 aaKnown RBP6.2□□□□□ -1.42
VPS13C-204ENST00000395898 CEP83Q9Y592 693 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 POLR3AO14802 1390 aaPredicted RBP6.2□□□□□ -1.42
VPS13C-204ENST00000395898 A0A1W2PRG0 241 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 KRT2P35908 639 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 DDB1Q16531 1140 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 LARP6Q9BRS8 491 aaKnown RBP6.2□□□□□ -1.42
VPS13C-204ENST00000395898 TSGA10Q9BZW7 698 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 IGHDP01880 384 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 TUBBP07437 444 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 RRAGBQ5VZM2 374 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 BRAPQ7Z569 592 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 FAM200AQ8TCP9 573 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 CEP63Q96MT8 703 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 SNRKQ9NRH2 765 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 LIG1P18858 919 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 MRPS27Q92552 414 aaKnown RBP6.2□□□□□ -1.42
VPS13C-204ENST00000395898 RTCBQ9Y3I0 505 aaKnown RBP6.2□□□□□ -1.42
VPS13C-204ENST00000395898 ANKS4BQ8N8V4 417 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 BRF1Q92994 677 aa6.2□□□□□ -1.42
VPS13C-204ENST00000395898 NIP7Q9Y221 180 aaKnown RBP eCLIP6.2□□□□□ -1.42
VPS13C-204ENST00000395898 ABCC10Q5T3U5 1492 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 PHACTR2O75167 634 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 NAPAP54920 295 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 LINS1Q8NG48 757 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 XAGE3Q8WTP9 111 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 NPATQ14207 1427 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 PLXNC1O60486 1568 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 MYCNP04198 464 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-204ENST00000395898 MSANTD4Q8NCY6 345 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 IQCGQ9H095 443 aaKnown RBP6.19□□□□□ -1.42
VPS13C-204ENST00000395898 RIMS2Q9UQ26 1411 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 CBX1P83916 185 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 ATP10BO94823 1461 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 MAP3K5Q99683 1374 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 TRIM75PA6NK02 468 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 GIMAP6Q6P9H5 292 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 ANKRD2Q9GZV1 360 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 HS2ST1Q7LGA3 356 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 PPP1R14CQ8TAE6 165 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 MAST1Q9Y2H9 1570 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 RTL1A6NKG5 1358 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 HCLS1P14317 486 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-204ENST00000395898 BABAM1Q9NWV8 329 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 ASXL2Q76L83 1435 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 AFMP43652 599 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 CEBPAP49715 358 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-204ENST00000395898 LMBR1LQ6UX01 489 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 DZIP3Q86Y13 1208 aaKnown RBP6.19□□□□□ -1.42
VPS13C-204ENST00000395898 JAKMIP2Q96AA8 810 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 NSRP1Q9H0G5 558 aaKnown RBP6.19□□□□□ -1.42
VPS13C-204ENST00000395898 RUFY3Q7L099 469 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 MAATS1Q7Z4T9 603 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 SMARCC2Q8TAQ2 1214 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 PIK3C2GO75747 1445 aa6.19□□□□□ -1.42
VPS13C-204ENST00000395898 IL2RBP14784 551 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 PPM1FP49593 454 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-204ENST00000395898 PANK2Q9BZ23 570 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 SPTLC2O15270 562 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 IVLP07476 585 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 PAXIP1Q6ZW49 1069 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-204ENST00000395898 NFATC2IPQ8NCF5 419 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.18□□□□□ -1.42
VPS13C-204ENST00000395898 TACC1O75410 805 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 USP48Q86UV5 1035 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 SIRT1Q96EB6 747 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 DCAF5Q96JK2 942 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 DCTPP1Q9H773 170 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 RAD50Q92878 1312 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 KRT79Q5XKE5 535 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 SPATA24Q86W54 205 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 MRPL50Q8N5N7 158 aaKnown RBP6.18□□□□□ -1.42
VPS13C-204ENST00000395898 NAP1L4Q99733 375 aaKnown RBP6.18□□□□□ -1.42
VPS13C-204ENST00000395898 SLC4A8Q2Y0W8 1093 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 CCDC77Q9BR77 488 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 PCDH11XQ9BZA7 1347 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 PCDH11YQ9BZA8 1340 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 F13A1P00488 732 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 RNF187Q5TA31 235 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-204ENST00000395898 PARD3Q8TEW0 1356 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 CTAGE15A4D2H0 777 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 CTAGE8P0CG41 777 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 MAP3K9P80192 1104 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 CCDC14Q49A88 953 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 DHX32Q7L7V1 743 aaKnown RBP6.18□□□□□ -1.42
VPS13C-204ENST00000395898 CTAGE6Q86UF2 777 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 CTAGE4Q8IX94 777 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 STK24Q9Y6E0 443 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 OPA1O60313 960 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 RPL13P26373 211 aaKnown RBP6.18□□□□□ -1.42
VPS13C-204ENST00000395898 TRMT1LQ7Z2T5 733 aaKnown RBP6.18□□□□□ -1.42
VPS13C-204ENST00000395898 TNNI2P48788 182 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms