RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 TAF7Q15545 349 aaPredicted RBP17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 MPRIPQ6WCQ1 1025 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 AOPEPQ8N6M6 819 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 MYCBPQ99417 103 aaPredicted RBP17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 FUT8Q9BYC5 575 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 CLGNO14967 610 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 FANCGO15287 622 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 RAB11FIP3O75154 756 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 PACS2Q86VP3 889 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 SSH3Q8TE77 659 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 PHAXQ9H814 394 aaKnown RBP17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 URI1O94763 535 aaPredicted RBP17.04■□□□□ 0.32
VPS9D1-201ENST00000389386 APPP05067 770 aa17.04■□□□□ 0.32
VPS9D1-201ENST00000389386 SFPQP23246 707 aaKnown RBP eCLIP17.04■□□□□ 0.32
VPS9D1-201ENST00000389386 MAGEA9P43362 315 aa17.04■□□□□ 0.32
VPS9D1-201ENST00000389386 TSGA10IPQ3SY00 556 aa17.04■□□□□ 0.32
VPS9D1-201ENST00000389386 NOM1Q5C9Z4 860 aaKnown RBP17.04■□□□□ 0.32
VPS9D1-201ENST00000389386 KCNH5Q8NCM2 988 aa17.04■□□□□ 0.32
VPS9D1-201ENST00000389386 AXIN2Q9Y2T1 843 aa17.04■□□□□ 0.32
VPS9D1-201ENST00000389386 RGPD2P0DJD1 1756 aa17.04■□□□□ 0.32
VPS9D1-201ENST00000389386 COL9A3Q14050 684 aaPredicted RBP17.04■□□□□ 0.32
VPS9D1-201ENST00000389386 TTC41PQ6P2S7 1318 aa17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 IFIT2P09913 472 aaKnown RBP17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 RESTQ13127 1097 aa17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 CHRNA2Q15822 529 aa17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 TTC31Q49AM3 519 aaPredicted RBP17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 CEP57L1Q8IYX8 460 aa17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 GPR161Q8N6U8 529 aaKnown RBP17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 RHPN1Q8TCX5 695 aa17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 RUFY2Q8WXA3 655 aa17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 ARFGAP3Q9NP61 516 aa17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 PARP3Q9Y6F1 533 aa17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 TRPM3Q9HCF6 1732 aaPredicted RBP17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 ZKSCAN1P17029 563 aaPredicted RBP17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 CCDC30Q5VVM6 783 aa17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 TMC6Q7Z403 805 aa17.03■□□□□ 0.32
VPS9D1-201ENST00000389386 KIF1AQ12756 1690 aa17.02■□□□□ 0.32
VPS9D1-201ENST00000389386 H3BQF6 201 aa17.02■□□□□ 0.32
VPS9D1-201ENST00000389386 IVLP07476 585 aa17.02■□□□□ 0.32
VPS9D1-201ENST00000389386 SURF6O75683 361 aaKnown RBP17.02■□□□□ 0.31
VPS9D1-201ENST00000389386 HDGFL1Q5TGJ6 251 aa17.02■□□□□ 0.31
VPS9D1-201ENST00000389386 ZNF530Q6P9A1 599 aaPredicted RBP17.02■□□□□ 0.31
VPS9D1-201ENST00000389386 CCAR1Q8IX12 1150 aaKnown RBP17.02■□□□□ 0.31
VPS9D1-201ENST00000389386 CNPY4Q8N129 248 aa17.02■□□□□ 0.31
VPS9D1-201ENST00000389386 XPO4Q9C0E2 1151 aaKnown RBP17.02■□□□□ 0.31
VPS9D1-201ENST00000389386 CCP110O43303 1012 aa17.01■□□□□ 0.31
VPS9D1-201ENST00000389386 CREB3L3Q68CJ9 461 aa17.01■□□□□ 0.31
VPS9D1-201ENST00000389386 ARHGEF25Q86VW2 580 aa17.01■□□□□ 0.31
VPS9D1-201ENST00000389386 GOLPH3LQ9H4A5 285 aa17.01■□□□□ 0.31
VPS9D1-201ENST00000389386 CFAP45Q9UL16 551 aa17.01■□□□□ 0.31
VPS9D1-201ENST00000389386 NFAT5O94916 1531 aa17.01■□□□□ 0.31
VPS9D1-201ENST00000389386 NRDCO43847 1150 aa17.01■□□□□ 0.31
VPS9D1-201ENST00000389386 DHX8Q14562 1220 aaKnown RBP17.01■□□□□ 0.31
VPS9D1-201ENST00000389386 NAT10Q9H0A0 1025 aaKnown RBP17.01■□□□□ 0.31
VPS9D1-201ENST00000389386 USP44Q9H0E7 712 aa17.01■□□□□ 0.31
VPS9D1-201ENST00000389386 TOMM22Q9NS69 142 aa17■□□□□ 0.31
VPS9D1-201ENST00000389386 IFNKQ9P0W0 207 aa17■□□□□ 0.31
VPS9D1-201ENST00000389386 CRYBG1Q9Y4K1 1723 aa17■□□□□ 0.31
VPS9D1-201ENST00000389386 ATP2B1P20020 1258 aa17■□□□□ 0.31
VPS9D1-201ENST00000389386 LEKR1Q6ZMV7 388 aa17■□□□□ 0.31
VPS9D1-201ENST00000389386 RBM8AQ9Y5S9 174 aaKnown RBP17■□□□□ 0.31
VPS9D1-201ENST00000389386 SPATA31A3Q5VYP0 1347 aa17■□□□□ 0.31
VPS9D1-201ENST00000389386 RPS6KA5O75582 802 aa16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 ANKRD1Q15327 319 aa16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 RSRC2Q7L4I2 434 aaKnown RBP16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 ENGASEQ8NFI3 743 aa16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 DRC1Q96MC2 740 aa16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 PARD6BQ9BYG5 372 aa16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 SMC2O95347 1197 aa16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 ADD1P35611 737 aaKnown RBP16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 POLA2Q14181 598 aa16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 ANKRD24Q8TF21 1146 aa16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 ALDH8A1Q9H2A2 487 aaPredicted RBP16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 RCOR1Q9UKL0 485 aa16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 USP42Q9H9J4 1324 aaKnown RBP16.99■□□□□ 0.31
VPS9D1-201ENST00000389386 EIF3CLB5ME19 914 aaKnown RBP16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 MAP2K7O14733 419 aa16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 PSMA5P28066 241 aa16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 FOXR1Q6PIV2 292 aa16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 PPP1R42Q7Z4L9 355 aa16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 DDX11Q96FC9 970 aa16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 TCEANC2Q96MN5 208 aa16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 EIF3CQ99613 913 aaKnown RBP16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 KINO60870 393 aaKnown RBP16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 TOB2Q14106 344 aaPredicted RBP16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 ZSCAN16Q9H4T2 348 aaPredicted RBP16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 PXDNQ92626 1479 aa16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 MED1Q15648 1581 aaPredicted RBP16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 GLRX3O76003 335 aaKnown RBP16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 UBTFL1P0CB47 393 aaPredicted RBP16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 MAP3K9P80192 1104 aa16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 CEBPZQ03701 1054 aaKnown RBP16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 TEFQ10587 303 aa16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 LONRF2Q1L5Z9 754 aa16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 CCDC73Q6ZRK6 1079 aa16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 BRF1Q92994 677 aa16.98■□□□□ 0.31
VPS9D1-201ENST00000389386 TNS3Q68CZ2 1445 aa16.97■□□□□ 0.31
VPS9D1-201ENST00000389386 JAK2O60674 1132 aa16.97■□□□□ 0.31
VPS9D1-201ENST00000389386 RABGGTAQ92696 567 aa16.97■□□□□ 0.31
VPS9D1-201ENST00000389386 ERCC4Q92889 916 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms