RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 CCDC34Q96HJ3 373 aa16.2■□□□□ 0.18
SDC1-202ENST00000381150 EPC1Q9H2F5 836 aa16.2■□□□□ 0.18
SDC1-202ENST00000381150 ARFGEF2Q9Y6D5 1785 aa16.19■□□□□ 0.18
SDC1-202ENST00000381150 BOLA2Q9H3K6 86 aa16.19■□□□□ 0.18
SDC1-202ENST00000381150 ZCCHC17Q9NP64 241 aaKnown RBP16.19■□□□□ 0.18
SDC1-202ENST00000381150 ME1P48163 572 aa16.19■□□□□ 0.18
SDC1-202ENST00000381150 PIP4K2AP48426 406 aaPredicted RBP16.19■□□□□ 0.18
SDC1-202ENST00000381150 PLA2G4DQ86XP0 818 aa16.19■□□□□ 0.18
SDC1-202ENST00000381150 ERO1AQ96HE7 468 aa16.19■□□□□ 0.18
SDC1-202ENST00000381150 MYD88Q99836 296 aa16.19■□□□□ 0.18
SDC1-202ENST00000381150 CLSTN2Q9H4D0 955 aa16.19■□□□□ 0.18
SDC1-202ENST00000381150 VPS53Q5VIR6 699 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 CCDC73Q6ZRK6 1079 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 AACSQ86V21 672 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 FSD1Q9BTV5 496 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 LAMB4A4D0S4 1761 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 KINO60870 393 aaKnown RBP16.18■□□□□ 0.18
SDC1-202ENST00000381150 URI1O94763 535 aaPredicted RBP16.18■□□□□ 0.18
SDC1-202ENST00000381150 BMS1Q14692 1282 aaKnown RBP16.18■□□□□ 0.18
SDC1-202ENST00000381150 TMC6Q7Z403 805 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 KLHDC4Q8TBB5 520 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 UBXN4Q92575 508 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 KCNB2Q92953 911 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 DNAI1Q9UI46 699 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 CCDC171Q6TFL3 1326 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 SEC31AO94979 1220 aaKnown RBP16.18■□□□□ 0.18
SDC1-202ENST00000381150 RFX5P48382 616 aaPredicted RBP16.18■□□□□ 0.18
SDC1-202ENST00000381150 ST3GAL1Q11201 340 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 CREB3L3Q68CJ9 461 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 BRF1Q92994 677 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 PGBD1Q96JS3 809 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 TAF6LQ9Y6J9 622 aa16.18■□□□□ 0.18
SDC1-202ENST00000381150 AFDNP55196 1824 aaKnown RBP16.18■□□□□ 0.18
SDC1-202ENST00000381150 COL15A1P39059 1388 aa16.17■□□□□ 0.18
SDC1-202ENST00000381150 NEXNQ0ZGT2 675 aa16.17■□□□□ 0.18
SDC1-202ENST00000381150 CCAR1Q8IX12 1150 aaKnown RBP16.17■□□□□ 0.18
SDC1-202ENST00000381150 TLR7Q9NYK1 1049 aaKnown RBP16.17■□□□□ 0.18
SDC1-202ENST00000381150 GYS2P54840 703 aa16.17■□□□□ 0.18
SDC1-202ENST00000381150 G3BP1Q13283 466 aaKnown RBP eCLIP16.17■□□□□ 0.18
SDC1-202ENST00000381150 TTC5Q8N0Z6 440 aa16.17■□□□□ 0.18
SDC1-202ENST00000381150 EVI5LQ96CN4 794 aa16.17■□□□□ 0.18
SDC1-202ENST00000381150 UBR2Q8IWV8 1755 aa16.17■□□□□ 0.18
SDC1-202ENST00000381150 CASP7P55210 303 aa16.16■□□□□ 0.18
SDC1-202ENST00000381150 TMCO3Q6UWJ1 677 aa16.16■□□□□ 0.18
SDC1-202ENST00000381150 C10orf67Q8IYJ2 551 aa16.16■□□□□ 0.18
SDC1-202ENST00000381150 SNRKQ9NRH2 765 aa16.16■□□□□ 0.18
SDC1-202ENST00000381150 CABP4P57796 275 aa16.16■□□□□ 0.18
SDC1-202ENST00000381150 RABL6Q3YEC7 729 aaPredicted RBP16.16■□□□□ 0.18
SDC1-202ENST00000381150 HSP90AA4PQ58FG1 418 aa16.16■□□□□ 0.18
SDC1-202ENST00000381150 TEX35Q5T0J7 233 aa16.16■□□□□ 0.18
SDC1-202ENST00000381150 TDRD7Q8NHU6 1098 aaKnown RBP16.16■□□□□ 0.18
SDC1-202ENST00000381150 DNAJC2Q99543 621 aaKnown RBP16.16■□□□□ 0.18
SDC1-202ENST00000381150 ZSWIM4Q9H7M6 989 aa16.16■□□□□ 0.18
SDC1-202ENST00000381150 SOS2Q07890 1332 aaPredicted RBP16.16■□□□□ 0.18
SDC1-202ENST00000381150 WDR17Q8IZU2 1322 aa16.16■□□□□ 0.18
SDC1-202ENST00000381150 COPRSQ9NQ92 184 aa16.16■□□□□ 0.18
SDC1-202ENST00000381150 NDUFB9Q9Y6M9 179 aa16.16■□□□□ 0.18
SDC1-202ENST00000381150 STRCQ7RTU9 1775 aa16.16■□□□□ 0.18
SDC1-202ENST00000381150 SF3A1Q15459 793 aaKnown RBP16.15■□□□□ 0.18
SDC1-202ENST00000381150 NBPF26B4DH59 902 aa16.15■□□□□ 0.18
SDC1-202ENST00000381150 NRDCO43847 1150 aa16.15■□□□□ 0.18
SDC1-202ENST00000381150 CLCN6P51797 869 aa16.15■□□□□ 0.18
SDC1-202ENST00000381150 NBPF14Q5TI25 921 aa16.15■□□□□ 0.18
SDC1-202ENST00000381150 NBPF10Q6P3W6 841 aaKnown RBP16.15■□□□□ 0.18
SDC1-202ENST00000381150 NBPF15Q8N660 670 aa16.15■□□□□ 0.18
SDC1-202ENST00000381150 GPATCH3Q96I76 525 aa16.15■□□□□ 0.18
SDC1-202ENST00000381150 ZNF446Q9NWS9 450 aa16.15■□□□□ 0.18
SDC1-202ENST00000381150 CCT2P78371 535 aaKnown RBP16.14■□□□□ 0.18
SDC1-202ENST00000381150 PTPN12Q05209 780 aaKnown RBP16.14■□□□□ 0.18
SDC1-202ENST00000381150 NMIQ13287 307 aaPredicted RBP16.14■□□□□ 0.18
SDC1-202ENST00000381150 NECTIN1Q15223 517 aa16.14■□□□□ 0.18
SDC1-202ENST00000381150 IPO4Q8TEX9 1081 aaKnown RBP16.14■□□□□ 0.18
SDC1-202ENST00000381150 EDC3Q96F86 508 aaKnown RBP16.14■□□□□ 0.18
SDC1-202ENST00000381150 SHANK3Q9BYB0 1731 aa16.14■□□□□ 0.17
SDC1-202ENST00000381150 KRBA2Q6ZNG9 492 aa16.14■□□□□ 0.17
SDC1-202ENST00000381150 CAPN2P17655 700 aa16.14■□□□□ 0.17
SDC1-202ENST00000381150 SFPQP23246 707 aaKnown RBP eCLIP16.14■□□□□ 0.175e-6■□□□□ 9.6
SDC1-202ENST00000381150 PSMA5P28066 241 aa16.14■□□□□ 0.17
SDC1-202ENST00000381150 ZSWIM6Q9HCJ5 1215 aa16.14■□□□□ 0.17
SDC1-202ENST00000381150 COL5A2P05997 1499 aaPredicted RBP16.14■□□□□ 0.17
SDC1-202ENST00000381150 NKX1-1Q15270 411 aaPredicted RBP16.13■□□□□ 0.17
SDC1-202ENST00000381150 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.13■□□□□ 0.17
SDC1-202ENST00000381150 GOLGA8FQ08AF8 430 aa16.13■□□□□ 0.17
SDC1-202ENST00000381150 GOLGA8DPQ0D2H9 430 aa16.13■□□□□ 0.17
SDC1-202ENST00000381150 PLBD2Q8NHP8 589 aa16.13■□□□□ 0.17
SDC1-202ENST00000381150 ARGLU1Q9NWB6 273 aaPredicted RBP16.13■□□□□ 0.17
SDC1-202ENST00000381150 IFNKQ9P0W0 207 aa16.13■□□□□ 0.17
SDC1-202ENST00000381150 PAPPAQ13219 1627 aa16.13■□□□□ 0.17
SDC1-202ENST00000381150 SYCP1Q15431 976 aa16.13■□□□□ 0.17
SDC1-202ENST00000381150 STX1AQ16623 288 aa16.13■□□□□ 0.17
SDC1-202ENST00000381150 RNF20Q5VTR2 975 aa16.13■□□□□ 0.17
SDC1-202ENST00000381150 CEP57L1Q8IYX8 460 aa16.13■□□□□ 0.17
SDC1-202ENST00000381150 FSIP1Q8NA03 581 aa16.13■□□□□ 0.17
SDC1-202ENST00000381150 KCPQ6ZWJ8 1503 aa16.12■□□□□ 0.17
SDC1-202ENST00000381150 NUP188Q5SRE5 1749 aa16.12■□□□□ 0.17
SDC1-202ENST00000381150 ZCRB1Q8TBF4 217 aaKnown RBP16.12■□□□□ 0.17
SDC1-202ENST00000381150 DNAJC5Q9H3Z4 198 aa16.12■□□□□ 0.17
SDC1-202ENST00000381150 ABCA3Q99758 1704 aa16.12■□□□□ 0.17
SDC1-202ENST00000381150 ATP5J2-PTCD1G3V325 749 aa16.12■□□□□ 0.17
SDC1-202ENST00000381150 SLC27A2O14975 620 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 1005.4 ms