RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 C16orf87Q6PH81 154 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 IFT81Q8WYA0 676 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 A0A087WZG4 1122 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 EEF1DP29692 281 aaKnown RBP9.83□□□□□ -0.84
LIG3-202ENST00000378526 CHMP4BP1P59074 171 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 PKD2Q13563 968 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 SAFB2Q14151 953 aaKnown RBP eCLIP9.83□□□□□ -0.84
LIG3-202ENST00000378526 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.83□□□□□ -0.84
LIG3-202ENST00000378526 FAM186BQ8IYM0 893 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 PANK3Q9H999 370 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 CACYBPQ9HB71 228 aaKnown RBP9.83□□□□□ -0.84
LIG3-202ENST00000378526 USP47Q96K76 1375 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 MX1P20591 662 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 CPLX3Q8WVH0 158 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 ZNF287Q9HBT7 754 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 KLHL14Q9P2G3 628 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 SCRIBQ14160 1630 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 MYO1BO43795 1136 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 KRT3P12035 628 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 PHBP35232 272 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 NME8Q8N427 588 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 MIS12Q9H081 205 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 ORC6Q9Y5N6 252 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 PALM2Q8IXS6 379 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 MSANTD4Q8NCY6 345 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 C8orf76Q96K31 380 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 SEC63Q9UGP8 760 aaKnown RBP9.83□□□□□ -0.84
LIG3-202ENST00000378526 N4BP3O15049 544 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 NBPF6Q5VWK0 638 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 NBPF5PQ86XG9 351 aaPredicted RBP9.83□□□□□ -0.84
LIG3-202ENST00000378526 ST13P4Q8IZP2 240 aaPredicted RBP9.83□□□□□ -0.84
LIG3-202ENST00000378526 NBPF4Q96M43 638 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 SH2D4AQ9H788 454 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 HNRNPCP07910 306 aaKnown RBP eCLIP9.82□□□□□ -0.84
LIG3-202ENST00000378526 CCT4P50991 539 aaKnown RBP9.82□□□□□ -0.84
LIG3-202ENST00000378526 FSIP1Q8NA03 581 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 NLRP7Q8WX94 980 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 ELL2O00472 640 aaPredicted RBP9.82□□□□□ -0.84
LIG3-202ENST00000378526 GIPC1O14908 333 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 OAS2P29728 719 aaKnown RBP9.82□□□□□ -0.84
LIG3-202ENST00000378526 PDXDC1Q6P996 788 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 CKAP2LQ8IYA6 745 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 COG3Q96JB2 828 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 TROVE2P10155 538 aaKnown RBP eCLIP9.82□□□□□ -0.84
LIG3-202ENST00000378526 ZNF76P36508 570 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 PSMD6Q15008 389 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 PDZD8Q8NEN9 1154 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 CACTINQ8WUQ7 758 aaKnown RBP9.82□□□□□ -0.84
LIG3-202ENST00000378526 STK38LQ9Y2H1 464 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 XRCC6P12956 609 aaKnown RBP eCLIP9.82□□□□□ -0.84
LIG3-202ENST00000378526 NMIQ13287 307 aaPredicted RBP9.82□□□□□ -0.84
LIG3-202ENST00000378526 CHMP7Q8WUX9 453 aaPredicted RBP9.82□□□□□ -0.84
LIG3-202ENST00000378526 IGSF3O75054 1194 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 RILPL1Q5EBL4 403 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 CCHCR1Q8TD31 782 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 ZC3H15Q8WU90 426 aaKnown RBP9.82□□□□□ -0.84
LIG3-202ENST00000378526 CALML4Q96GE6 196 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 GOLGA8KD6RF30 607 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 RHOXF2BP0C7M4 288 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 LGSNQ5TDP6 509 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 ICE2Q659A1 982 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 BTN2A1Q7KYR7 527 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 ARHGAP18Q8N392 663 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 RHOXF2Q9BQY4 288 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 KIFC3Q9BVG8 833 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 ELP1O95163 1332 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 EVC2Q86UK5 1308 aa9.82□□□□□ -0.84
LIG3-202ENST00000378526 ZNF449Q6P9G9 518 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 CNGA4Q8IV77 575 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 SURF6O75683 361 aaKnown RBP9.81□□□□□ -0.84
LIG3-202ENST00000378526 BAG4O95429 457 aaKnown RBP9.81□□□□□ -0.84
LIG3-202ENST00000378526 U2AF2P26368 475 aaKnown RBP eCLIP9.81□□□□□ -0.847e-8■■■□□ 18.4
LIG3-202ENST00000378526 BRD3Q15059 726 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 RAD50Q92878 1312 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 RAB11FIP3O75154 756 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 RGS22Q8NE09 1264 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 KRT7P08729 469 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 STK26Q9P289 416 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 FBXO2Q9UK22 296 aaPredicted RBP9.81□□□□□ -0.84
LIG3-202ENST00000378526 FAM169AQ9Y6X4 670 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 RANBP1P43487 201 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 RNASELQ05823 741 aaKnown RBP9.81□□□□□ -0.84
LIG3-202ENST00000378526 GEN1Q17RS7 908 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 CCDC125Q86Z20 511 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 IQCDQ96DY2 449 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 TRIM55Q9BYV6 548 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 MIS18AQ9NYP9 233 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 ARHGAP42A6NI28 874 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.81□□□□□ -0.84
LIG3-202ENST00000378526 TTC39AQ5SRH9 613 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 MCTP2Q6DN12 878 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 PARP2Q9UGN5 583 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 CCDC93Q567U6 631 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 KIAA2013Q8IYS2 634 aa9.81□□□□□ -0.84
LIG3-202ENST00000378526 DDX21Q9NR30 783 aaKnown RBP eCLIP9.81□□□□□ -0.84
LIG3-202ENST00000378526 RNF216Q9NWF9 866 aaPredicted RBP9.81□□□□□ -0.84
LIG3-202ENST00000378526 POLE2P56282 527 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 ANGPT1Q15389 498 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 CTAGE3PQ8IX95 158 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 ITGB1BP2Q9UKP3 347 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms