RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 LRRC24Q50LG9 513 aa16.9■□□□□ 0.3
TCOF1-202ENST00000377797 APOBRQ0VD83 1088 aa16.9■□□□□ 0.3
TCOF1-202ENST00000377797 APPBP2Q92624 585 aa16.9■□□□□ 0.3
TCOF1-202ENST00000377797 DIP2AQ14689 1571 aa16.89■□□□□ 0.3
TCOF1-202ENST00000377797 CEP57L1Q8IYX8 460 aa16.89■□□□□ 0.29
TCOF1-202ENST00000377797 OSBPL3Q9H4L5 887 aa16.89■□□□□ 0.29
TCOF1-202ENST00000377797 HOMER1Q86YM7 354 aa16.89■□□□□ 0.29
TCOF1-202ENST00000377797 RBM27Q9P2N5 1060 aaKnown RBP16.89■□□□□ 0.29
TCOF1-202ENST00000377797 MBD4O95243 580 aa16.89■□□□□ 0.29
TCOF1-202ENST00000377797 ZAP70P43403 619 aa16.89■□□□□ 0.29
TCOF1-202ENST00000377797 GSTO1P78417 241 aa16.89■□□□□ 0.29
TCOF1-202ENST00000377797 STX8Q9UNK0 236 aa16.89■□□□□ 0.29
TCOF1-202ENST00000377797 IPO7O95373 1038 aaKnown RBP16.89■□□□□ 0.29
TCOF1-202ENST00000377797 HSPA4P34932 840 aa16.89■□□□□ 0.29
TCOF1-202ENST00000377797 ZNF804AQ7Z570 1209 aa16.88■□□□□ 0.29
TCOF1-202ENST00000377797 UNC5CLQ8IV45 518 aa16.88■□□□□ 0.29
TCOF1-202ENST00000377797 ZC3H12CQ9C0D7 883 aaKnown RBP16.88■□□□□ 0.29
TCOF1-202ENST00000377797 CEP131Q9UPN4 1083 aa16.88■□□□□ 0.29
TCOF1-202ENST00000377797 GNAT2P19087 354 aa16.88■□□□□ 0.29
TCOF1-202ENST00000377797 IL6STP40189 918 aaPredicted RBP16.88■□□□□ 0.29
TCOF1-202ENST00000377797 UBE2HP62256 183 aa16.88■□□□□ 0.29
TCOF1-202ENST00000377797 ZSCAN16Q9H4T2 348 aaPredicted RBP16.88■□□□□ 0.29
TCOF1-202ENST00000377797 CKAP2LQ8IYA6 745 aa16.88■□□□□ 0.29
TCOF1-202ENST00000377797 CNPY2Q9Y2B0 182 aa16.88■□□□□ 0.29
TCOF1-202ENST00000377797 F8W031 263 aaPredicted RBP16.88■□□□□ 0.29
TCOF1-202ENST00000377797 CRKLP46109 303 aaKnown RBP16.88■□□□□ 0.29
TCOF1-202ENST00000377797 PDILTQ8N807 584 aa16.88■□□□□ 0.29
TCOF1-202ENST00000377797 SEC63Q9UGP8 760 aaKnown RBP16.88■□□□□ 0.29
TCOF1-202ENST00000377797 F13A1P00488 732 aa16.87■□□□□ 0.29
TCOF1-202ENST00000377797 VSIG10Q8N0Z9 540 aa16.87■□□□□ 0.29
TCOF1-202ENST00000377797 TMTC2Q8N394 836 aa16.87■□□□□ 0.29
TCOF1-202ENST00000377797 CEP170BQ9Y4F5 1589 aaPredicted RBP16.87■□□□□ 0.29
TCOF1-202ENST00000377797 GPAA1O43292 621 aa16.87■□□□□ 0.29
TCOF1-202ENST00000377797 FSIP1Q8NA03 581 aa16.87■□□□□ 0.29
TCOF1-202ENST00000377797 KAT14Q9H8E8 782 aa16.86■□□□□ 0.29
TCOF1-202ENST00000377797 NLRP5P59047 1200 aa16.86■□□□□ 0.29
TCOF1-202ENST00000377797 DNM1Q05193 864 aaKnown RBP16.86■□□□□ 0.29
TCOF1-202ENST00000377797 PUS3Q9BZE2 481 aaKnown RBP16.86■□□□□ 0.29
TCOF1-202ENST00000377797 RPS6KB1P23443 525 aa16.86■□□□□ 0.29
TCOF1-202ENST00000377797 KIF5BP33176 963 aa16.86■□□□□ 0.29
TCOF1-202ENST00000377797 DBNLQ9UJU6 430 aaKnown RBP16.86■□□□□ 0.29
TCOF1-202ENST00000377797 MROH5Q6ZUA9 1318 aa16.86■□□□□ 0.29
TCOF1-202ENST00000377797 SERPINC1P01008 464 aa16.86■□□□□ 0.29
TCOF1-202ENST00000377797 SYT1P21579 422 aa16.86■□□□□ 0.29
TCOF1-202ENST00000377797 FAM182BQ5T319 152 aa16.86■□□□□ 0.29
TCOF1-202ENST00000377797 ALG1Q9BT22 464 aa16.86■□□□□ 0.29
TCOF1-202ENST00000377797 DENND2AQ9ULE3 1009 aa16.86■□□□□ 0.29
TCOF1-202ENST00000377797 A0A0D9SFI3 127 aa16.85■□□□□ 0.29
TCOF1-202ENST00000377797 USP48Q86UV5 1035 aa16.85■□□□□ 0.29
TCOF1-202ENST00000377797 PKNOX2Q96KN3 472 aa16.85■□□□□ 0.29
TCOF1-202ENST00000377797 GREM2Q9H772 168 aa16.85■□□□□ 0.29
TCOF1-202ENST00000377797 HIBADHP31937 336 aaKnown RBP16.85■□□□□ 0.29
TCOF1-202ENST00000377797 DDX19AQ9NUU7 478 aaKnown RBP16.85■□□□□ 0.29
TCOF1-202ENST00000377797 TLR7Q9NYK1 1049 aaKnown RBP16.85■□□□□ 0.29
TCOF1-202ENST00000377797 PALD1Q9ULE6 856 aa16.85■□□□□ 0.29
TCOF1-202ENST00000377797 CRB1P82279 1406 aa16.85■□□□□ 0.29
TCOF1-202ENST00000377797 IGKV5-2P06315 115 aa16.85■□□□□ 0.29
TCOF1-202ENST00000377797 RTN1Q16799 776 aa16.85■□□□□ 0.29
TCOF1-202ENST00000377797 IFIT1BQ5T764 474 aaKnown RBP16.85■□□□□ 0.29
TCOF1-202ENST00000377797 PARP3Q9Y6F1 533 aa16.85■□□□□ 0.29
TCOF1-202ENST00000377797 EPB41L2O43491 1005 aaKnown RBP16.84■□□□□ 0.29
TCOF1-202ENST00000377797 CCDC96Q2M329 555 aa16.84■□□□□ 0.29
TCOF1-202ENST00000377797 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.84■□□□□ 0.29
TCOF1-202ENST00000377797 LDHBP07195 334 aaKnown RBP16.84■□□□□ 0.29
TCOF1-202ENST00000377797 KCNQ4P56696 695 aa16.84■□□□□ 0.29
TCOF1-202ENST00000377797 PTH1RQ03431 593 aa16.84■□□□□ 0.29
TCOF1-202ENST00000377797 MCM9Q9NXL9 1143 aa16.84■□□□□ 0.29
TCOF1-202ENST00000377797 POLA2Q14181 598 aa16.84■□□□□ 0.29
TCOF1-202ENST00000377797 RPS8P62241 208 aaKnown RBP16.83■□□□□ 0.29
TCOF1-202ENST00000377797 CCAR2Q8N163 923 aaKnown RBP16.83■□□□□ 0.29
TCOF1-202ENST00000377797 SEC62Q99442 399 aaKnown RBP16.83■□□□□ 0.29
TCOF1-202ENST00000377797 ARMT1Q9H993 441 aa16.83■□□□□ 0.29
TCOF1-202ENST00000377797 DACH1Q9UI36 760 aa16.83■□□□□ 0.29
TCOF1-202ENST00000377797 RIMS1Q86UR5 1692 aaKnown RBP16.83■□□□□ 0.28
TCOF1-202ENST00000377797 PTPDC1A2A3K4 754 aa16.83■□□□□ 0.28
TCOF1-202ENST00000377797 FILIP1LQ4L180 1135 aa16.83■□□□□ 0.28
TCOF1-202ENST00000377797 CD163L1Q9NR16 1453 aa16.83■□□□□ 0.28
TCOF1-202ENST00000377797 RIMBP2O15034 1052 aa16.83■□□□□ 0.28
TCOF1-202ENST00000377797 KRT18P05783 430 aaKnown RBP16.83■□□□□ 0.28
TCOF1-202ENST00000377797 VAT1LQ9HCJ6 419 aa16.83■□□□□ 0.28
TCOF1-202ENST00000377797 CCDC194A0A1B0GVG4 234 aa16.83■□□□□ 0.28
TCOF1-202ENST00000377797 DTNBO60941 627 aa16.83■□□□□ 0.28
TCOF1-202ENST00000377797 SPATA5Q8NB90 893 aa16.83■□□□□ 0.28
TCOF1-202ENST00000377797 HAUS7Q99871 368 aa16.83■□□□□ 0.28
TCOF1-202ENST00000377797 FBXO3Q9UK99 471 aa16.83■□□□□ 0.28
TCOF1-202ENST00000377797 PTPN12Q05209 780 aaKnown RBP16.82■□□□□ 0.28
TCOF1-202ENST00000377797 HLA-DOAP06340 250 aa16.82■□□□□ 0.28
TCOF1-202ENST00000377797 RXRAP19793 462 aa16.82■□□□□ 0.28
TCOF1-202ENST00000377797 TSPY3P0CV98 308 aa16.82■□□□□ 0.28
TCOF1-202ENST00000377797 TSPY8P0CW00 308 aa16.82■□□□□ 0.28
TCOF1-202ENST00000377797 ZSCAN23Q3MJ62 389 aa16.82■□□□□ 0.28
TCOF1-202ENST00000377797 ARHGEF28Q8N1W1 1705 aaKnown RBP16.82■□□□□ 0.28
TCOF1-202ENST00000377797 B4E1Z4 1266 aa16.81■□□□□ 0.28
TCOF1-202ENST00000377797 IQSEC2Q5JU85 1478 aa16.81■□□□□ 0.28
TCOF1-202ENST00000377797 SASH1O94885 1247 aa16.81■□□□□ 0.28
TCOF1-202ENST00000377797 UFL1O94874 794 aa16.81■□□□□ 0.28
TCOF1-202ENST00000377797 NLRP10Q86W26 655 aa16.81■□□□□ 0.28
TCOF1-202ENST00000377797 CCAR1Q8IX12 1150 aaKnown RBP16.81■□□□□ 0.28
TCOF1-202ENST00000377797 ANO10Q9NW15 660 aa16.81■□□□□ 0.28
TCOF1-202ENST00000377797 ZNF532Q9HCE3 1301 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms