RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 KRT9P35527 623 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 NBPF9Q3BBW0 867 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 EAPPQ56P03 285 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 CASC4Q6P4E1 433 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 ZNF304Q9HCX3 659 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 PPARGC1AQ9UBK2 798 aaKnown RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 SATB2Q9UPW6 733 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 DDAH1O94760 285 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 UBTFL1P0CB47 393 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 ATP6V1AP38606 617 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 MCCD1P59942 119 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 CKAP4Q07065 602 aaKnown RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 NBPF1Q3BBV0 1214 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 CEP85LQ5SZL2 805 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 KANK4Q5T7N3 995 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 ZNF449Q6P9G9 518 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 PLVAPQ9BX97 442 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 NBPF3Q9H094 633 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 TNMDQ9H2S6 317 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 ARFGAP3Q9NP61 516 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 GJA3Q9Y6H8 435 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 CACNA1FO60840 1977 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 SMARCA5O60264 1052 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 TBCAO75347 108 aaKnown RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 CIB2O75838 187 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 HSPA4P34932 840 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 ITIH3Q06033 890 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 MICAL1Q8TDZ2 1067 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 SELENOSQ9BQE4 189 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 KRT23Q9C075 422 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 NDE1Q9NXR1 346 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 RAB3GAP2Q9H2M9 1393 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 FANCIQ9NVI1 1328 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 CAPN15O75808 1086 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 PAMP19021 973 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 SSFA2P28290 1259 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 MNAT1P51948 309 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 VMP1Q96GC9 406 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 FRMD6Q96NE9 622 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 VEZTQ9HBM0 779 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 PPP1R9AQ9ULJ8 1098 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 M0QZ92 97 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 IVLP07476 585 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 NBPF15Q8N660 670 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 SLC17A8Q8NDX2 589 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 MTRQ99707 1265 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.22□□□□□ -1.573e-8■□□□□ 9.3
SCN1A-202ENST00000375405 TRIM8Q9BZR9 551 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 LNPKQ9C0E8 428 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 CCDC68Q9H2F9 335 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 CD2APQ9Y5K6 639 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 ADAMTS2O95450 1211 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 ALDH3A1P30838 453 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 GPR1P46091 355 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 SLC12A1Q13621 1099 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 BRDTQ58F21 947 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 CAVIN4Q5BKX8 364 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 ZC3H12BQ5HYM0 836 aaKnown RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 LRCH2Q5VUJ6 765 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 GABPB2Q8TAK5 448 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 ZFYVE19Q96K21 471 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 KRT3P12035 628 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 KIF5BP33176 963 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 FAM186BQ8IYM0 893 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 TRIML1Q8N9V2 468 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 HAUS8Q9BT25 410 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 KCNK9Q9NPC2 374 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 UBN1Q9NPG3 1134 aa5.22□□□□□ -1.57
SCN1A-202ENST00000375405 ESRRBO95718 433 aa5.21□□□□□ -1.57
SCN1A-202ENST00000375405 PPP2R5AQ15172 486 aa5.21□□□□□ -1.57
SCN1A-202ENST00000375405 ATF7IPQ6VMQ6 1270 aa5.21□□□□□ -1.57
SCN1A-202ENST00000375405 SRGAP1Q7Z6B7 1085 aa5.21□□□□□ -1.57
SCN1A-202ENST00000375405 VPS37AQ8NEZ2 397 aa5.21□□□□□ -1.57
SCN1A-202ENST00000375405 SPDL1Q96EA4 605 aa5.21□□□□□ -1.57
SCN1A-202ENST00000375405 TRIM56Q9BRZ2 755 aaKnown RBP5.21□□□□□ -1.57
SCN1A-202ENST00000375405 COG4Q9H9E3 785 aa5.21□□□□□ -1.57
SCN1A-202ENST00000375405 PAPOLBQ9NRJ5 636 aaKnown RBP5.21□□□□□ -1.57
SCN1A-202ENST00000375405 HGSO14964 777 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-202ENST00000375405 CCDC85BQ15834 202 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-202ENST00000375405 TMEM57Q8N5G2 664 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 LUC7L2Q9Y383 392 aaKnown RBP5.21□□□□□ -1.58
SCN1A-202ENST00000375405 EFCAB8A8MWE9 144 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 SRGAP3O43295 1099 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 RANBP6O60518 1105 aaKnown RBP5.21□□□□□ -1.58
SCN1A-202ENST00000375405 STK10O94804 968 aaKnown RBP5.21□□□□□ -1.58
SCN1A-202ENST00000375405 HMGB1P09429 215 aaKnown RBP5.21□□□□□ -1.58
SCN1A-202ENST00000375405 PYGBP11216 843 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 TEX9Q8N6V9 391 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 PANK1Q8TE04 598 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 CCDC138Q96M89 665 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 PPP1R12CQ9BZL4 782 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 TSPY26PQ9H489 355 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 PANK3Q9H999 370 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 LZTS3O60299 673 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-202ENST00000375405 EFCAB14O75071 495 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 GSTA1P08263 222 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 GSTA2P09210 222 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 KIF22Q14807 665 aa5.21□□□□□ -1.58
SCN1A-202ENST00000375405 DBN1Q16643 649 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms