RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 COL17A1Q9UMD9 1497 aaPredicted RBP13.43□□□□□ -0.26
PTPN1-201ENST00000371621 N4BP3O15049 544 aa13.43□□□□□ -0.26
PTPN1-201ENST00000371621 ARHGAP6O43182 974 aa13.43□□□□□ -0.26
PTPN1-201ENST00000371621 PPFIA4O75335 1185 aa13.43□□□□□ -0.26
PTPN1-201ENST00000371621 CLSTN1O94985 981 aa13.43□□□□□ -0.26
PTPN1-201ENST00000371621 PAFAH1B1P43034 410 aa13.43□□□□□ -0.26
PTPN1-201ENST00000371621 SATB1Q01826 763 aa13.43□□□□□ -0.26
PTPN1-201ENST00000371621 GPIHBP1Q8IV16 184 aa13.43□□□□□ -0.26
PTPN1-201ENST00000371621 LRRN4CLQ8ND94 238 aa13.43□□□□□ -0.26
PTPN1-201ENST00000371621 PAIP2Q9BPZ3 127 aaKnown RBP13.43□□□□□ -0.26
PTPN1-201ENST00000371621 DENND4BO75064 1496 aaPredicted RBP13.43□□□□□ -0.26
PTPN1-201ENST00000371621 IFFO1Q0D2I5 559 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 IFT88Q13099 833 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 PPP1R12CQ9BZL4 782 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 SUGCTQ9HAC7 445 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 FOXR1Q6PIV2 292 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 UNC5CLQ8IV45 518 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 RIPOR2Q9Y4F9 1068 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 PPIP5K1Q6PFW1 1433 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 HIP1O00291 1037 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 LARGE1O95461 756 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 SCP2P22307 547 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 RHPN1Q8TCX5 695 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 PRAM1Q96QH2 718 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 CAPS2Q9BXY5 557 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 INCENPQ9NQS7 918 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 CCDC151A5D8V7 595 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 OPA1O60313 960 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 IMPACTQ9P2X3 320 aa13.42□□□□□ -0.26
PTPN1-201ENST00000371621 PZPP20742 1482 aa13.41□□□□□ -0.26
PTPN1-201ENST00000371621 DNMT1P26358 1616 aaKnown RBP13.41□□□□□ -0.26
PTPN1-201ENST00000371621 N4BP1O75113 896 aaKnown RBP13.41□□□□□ -0.26
PTPN1-201ENST00000371621 CASP8Q14790 479 aa13.41□□□□□ -0.26
PTPN1-201ENST00000371621 Q6ZUG5 572 aa13.41□□□□□ -0.26
PTPN1-201ENST00000371621 FAM71BQ8TC56 605 aa13.41□□□□□ -0.26
PTPN1-201ENST00000371621 NEK1Q96PY6 1258 aa13.41□□□□□ -0.26
PTPN1-201ENST00000371621 MRFAP1Q9Y605 127 aa13.41□□□□□ -0.26
PTPN1-201ENST00000371621 INSRP06213 1382 aa13.41□□□□□ -0.26
PTPN1-201ENST00000371621 RBBP5Q15291 538 aaKnown RBP13.41□□□□□ -0.26
PTPN1-201ENST00000371621 CCDC102BQ68D86 513 aa13.41□□□□□ -0.26
PTPN1-201ENST00000371621 MYL5Q02045 173 aa13.41□□□□□ -0.26
PTPN1-201ENST00000371621 ENO4A6NNW6 628 aa13.4□□□□□ -0.26
PTPN1-201ENST00000371621 E7EVH7 732 aa13.4□□□□□ -0.26
PTPN1-201ENST00000371621 PPP1R12BO60237 982 aaPredicted RBP13.4□□□□□ -0.26
PTPN1-201ENST00000371621 KRT32Q14532 448 aa13.4□□□□□ -0.26
PTPN1-201ENST00000371621 MUM1L1Q5H9M0 696 aa13.4□□□□□ -0.26
PTPN1-201ENST00000371621 VPS53Q5VIR6 699 aa13.4□□□□□ -0.26
PTPN1-201ENST00000371621 MAGEC2Q9UBF1 373 aaPredicted RBP13.4□□□□□ -0.26
PTPN1-201ENST00000371621 PSDA5PKW4 1024 aaPredicted RBP13.4□□□□□ -0.26
PTPN1-201ENST00000371621 ATP8B1O43520 1251 aa13.4□□□□□ -0.26
PTPN1-201ENST00000371621 AFMP43652 599 aa13.4□□□□□ -0.26
PTPN1-201ENST00000371621 NAIF1Q69YI7 327 aaPredicted RBP13.4□□□□□ -0.26
PTPN1-201ENST00000371621 TRMT44Q8IYL2 757 aaKnown RBP13.4□□□□□ -0.26
PTPN1-201ENST00000371621 SEC62Q99442 399 aaKnown RBP13.4□□□□□ -0.26
PTPN1-201ENST00000371621 IL16Q14005 1332 aa13.4□□□□□ -0.26
PTPN1-201ENST00000371621 RNASE9P60153 205 aaKnown RBP13.4□□□□□ -0.26
PTPN1-201ENST00000371621 DPCR1Q3MIW9 517 aa13.4□□□□□ -0.26
PTPN1-201ENST00000371621 CREB3L3Q68CJ9 461 aa13.4□□□□□ -0.26
PTPN1-201ENST00000371621 NCOA5Q9HCD5 579 aaKnown RBP13.4□□□□□ -0.26
PTPN1-201ENST00000371621 GOPCQ9HD26 462 aa13.4□□□□□ -0.26
PTPN1-201ENST00000371621 ZNF446Q9NWS9 450 aa13.4□□□□□ -0.26
PTPN1-201ENST00000371621 SPTLC2O15270 562 aa13.39□□□□□ -0.27
PTPN1-201ENST00000371621 KIF1CO43896 1103 aaKnown RBP13.39□□□□□ -0.27
PTPN1-201ENST00000371621 CLTAP09496 248 aa13.39□□□□□ -0.27
PTPN1-201ENST00000371621 ARHGAP25P42331 645 aa13.39□□□□□ -0.27
PTPN1-201ENST00000371621 ADCK5Q3MIX3 580 aa13.39□□□□□ -0.27
PTPN1-201ENST00000371621 TRIM68Q6AZZ1 485 aa13.39□□□□□ -0.27
PTPN1-201ENST00000371621 ATP1A3P13637 1013 aa13.39□□□□□ -0.27
PTPN1-201ENST00000371621 HAND2P61296 217 aa13.39□□□□□ -0.27
PTPN1-201ENST00000371621 MRPS25P82663 173 aaKnown RBP13.39□□□□□ -0.27
PTPN1-201ENST00000371621 NGDNQ8NEJ9 315 aaKnown RBP13.39□□□□□ -0.27
PTPN1-201ENST00000371621 SKAP2O75563 359 aaPredicted RBP13.39□□□□□ -0.27
PTPN1-201ENST00000371621 NAPGQ99747 312 aaPredicted RBP13.39□□□□□ -0.27
PTPN1-201ENST00000371621 SMIM23A6NLE4 172 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 YEATS4O95619 227 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 CCT6AP40227 531 aaKnown RBP13.38□□□□□ -0.27
PTPN1-201ENST00000371621 PPP1R7Q15435 360 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 SPA17Q15506 151 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 TAF7Q15545 349 aaPredicted RBP13.38□□□□□ -0.27
PTPN1-201ENST00000371621 CFAP58Q5T655 872 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 RIN2Q8WYP3 895 aaPredicted RBP13.38□□□□□ -0.27
PTPN1-201ENST00000371621 ECHDC1Q9NTX5 307 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 MACROD2A1Z1Q3 448 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 TULP2O00295 520 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 ENC1O14682 589 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 NEXNQ0ZGT2 675 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 IRX2Q9BZI1 471 aaPredicted RBP13.38□□□□□ -0.27
PTPN1-201ENST00000371621 FANCLQ9NW38 375 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 TPCN1Q9ULQ1 816 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 SCAF11Q99590 1463 aaKnown RBP13.38□□□□□ -0.27
PTPN1-201ENST00000371621 PNMA6EA0A0J9YXQ4 647 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 PLA2G4DQ86XP0 818 aa13.38□□□□□ -0.27
PTPN1-201ENST00000371621 ANXA1P04083 346 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 FLIIQ13045 1269 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 IMMTQ16891 758 aaKnown RBP13.37□□□□□ -0.27
PTPN1-201ENST00000371621 E4F1Q66K89 784 aaPredicted RBP13.37□□□□□ -0.27
PTPN1-201ENST00000371621 IQCA1Q86XH1 822 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 CEP89Q96ST8 783 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 SLF1Q9BQI6 1058 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 GCC2Q8IWJ2 1684 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms