RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 PRPF40BQ6NWY9 871 aaKnown RBP24.21■■□□□ 1.47
CLN3-205ENST00000359984 TBC1D9Q6ZT07 1266 aa24.21■■□□□ 1.47
CLN3-205ENST00000359984 KIF13BQ9NQT8 1826 aa24.21■■□□□ 1.47
CLN3-205ENST00000359984 A0A0G2JLW4 131 aa24.21■■□□□ 1.47
CLN3-205ENST00000359984 DPEP1P16444 411 aa24.21■■□□□ 1.47
CLN3-205ENST00000359984 KLRK1P26718 216 aa24.21■■□□□ 1.47
CLN3-205ENST00000359984 EVI5LQ96CN4 794 aa24.21■■□□□ 1.47
CLN3-205ENST00000359984 EDC3Q96F86 508 aaKnown RBP24.21■■□□□ 1.47
CLN3-205ENST00000359984 DNAJC2Q99543 621 aaKnown RBP24.21■■□□□ 1.47
CLN3-205ENST00000359984 PODXL2Q9NZ53 605 aa24.21■■□□□ 1.47
CLN3-205ENST00000359984 ARID4AP29374 1257 aaPredicted RBP24.2■■□□□ 1.46
CLN3-205ENST00000359984 OLFM4Q6UX06 510 aa24.2■■□□□ 1.46
CLN3-205ENST00000359984 LRRC37AA6NMS7 1700 aa24.2■■□□□ 1.46
CLN3-205ENST00000359984 UQCRFS1P1P0C7P4 283 aa24.19■■□□□ 1.46
CLN3-205ENST00000359984 KCNA3P22001 575 aa24.19■■□□□ 1.46
CLN3-205ENST00000359984 GYG1P46976 350 aa24.19■■□□□ 1.46
CLN3-205ENST00000359984 IRS2Q9Y4H2 1338 aa24.19■■□□□ 1.46
CLN3-205ENST00000359984 ATP2B4P23634 1241 aa24.19■■□□□ 1.46
CLN3-205ENST00000359984 MCAMP43121 646 aa24.19■■□□□ 1.46
CLN3-205ENST00000359984 FAM84BQ96KN1 310 aaPredicted RBP24.19■■□□□ 1.46
CLN3-205ENST00000359984 SNRKQ9NRH2 765 aa24.19■■□□□ 1.46
CLN3-205ENST00000359984 GGA1Q9UJY5 639 aa24.19■■□□□ 1.46
CLN3-205ENST00000359984 SEC24BO95487 1268 aa24.18■■□□□ 1.46
CLN3-205ENST00000359984 TGFB2P61812 414 aa24.18■■□□□ 1.46
CLN3-205ENST00000359984 UFL1O94874 794 aa24.17■■□□□ 1.46
CLN3-205ENST00000359984 CAVIN4Q5BKX8 364 aa24.17■■□□□ 1.46
CLN3-205ENST00000359984 FBXO33Q7Z6M2 555 aa24.17■■□□□ 1.46
CLN3-205ENST00000359984 POLLQ9UGP5 575 aa24.17■■□□□ 1.46
CLN3-205ENST00000359984 FKBP4Q02790 459 aaKnown RBP eCLIP24.17■■□□□ 1.46
CLN3-205ENST00000359984 PI16Q6UXB8 463 aa24.17■■□□□ 1.46
CLN3-205ENST00000359984 TXNRD3Q86VQ6 643 aa24.17■■□□□ 1.46
CLN3-205ENST00000359984 TBC1D16Q8TBP0 767 aa24.17■■□□□ 1.46
CLN3-205ENST00000359984 C7orf43Q8WVR3 580 aa24.17■■□□□ 1.46
CLN3-205ENST00000359984 PAG1Q9NWQ8 432 aa24.17■■□□□ 1.46
CLN3-205ENST00000359984 SLX4Q8IY92 1834 aa24.17■■□□□ 1.46
CLN3-205ENST00000359984 GOLIM4O00461 696 aa24.16■■□□□ 1.46
CLN3-205ENST00000359984 CHMLP26374 656 aa24.16■■□□□ 1.46
CLN3-205ENST00000359984 ZAP70P43403 619 aa24.16■■□□□ 1.46
CLN3-205ENST00000359984 TTLL6Q8N841 843 aa24.16■■□□□ 1.46
CLN3-205ENST00000359984 GPR101Q96P66 508 aaPredicted RBP24.16■■□□□ 1.46
CLN3-205ENST00000359984 TMX4Q9H1E5 349 aaPredicted RBP24.16■■□□□ 1.46
CLN3-205ENST00000359984 SPON1Q9HCB6 807 aa24.16■■□□□ 1.46
CLN3-205ENST00000359984 DLEC1Q9Y238 1755 aa24.15■■□□□ 1.46
CLN3-205ENST00000359984 RASGRF1Q13972 1273 aa24.15■■□□□ 1.46
CLN3-205ENST00000359984 C15orf52Q6ZUT6 534 aaKnown RBP24.15■■□□□ 1.46
CLN3-205ENST00000359984 MPNDQ8N594 471 aa24.15■■□□□ 1.46
CLN3-205ENST00000359984 HMG20BQ9P0W2 317 aa24.15■■□□□ 1.46
CLN3-205ENST00000359984 PPP1R1BQ9UD71 204 aaPredicted RBP24.15■■□□□ 1.46
CLN3-205ENST00000359984 CD2APQ9Y5K6 639 aa24.15■■□□□ 1.46
CLN3-205ENST00000359984 CACNA1SQ13698 1873 aa24.15■■□□□ 1.46
CLN3-205ENST00000359984 LTBP1Q14766 1721 aa24.15■■□□□ 1.46
CLN3-205ENST00000359984 ANTXR1Q9H6X2 564 aa24.15■■□□□ 1.46
CLN3-205ENST00000359984 ZNF219Q9P2Y4 722 aaPredicted RBP24.15■■□□□ 1.46
CLN3-205ENST00000359984 HIBADHP31937 336 aaKnown RBP24.14■■□□□ 1.45
CLN3-205ENST00000359984 CASC1Q6TDU7 716 aa24.14■■□□□ 1.45
CLN3-205ENST00000359984 VPS37DQ86XT2 251 aa24.14■■□□□ 1.45
CLN3-205ENST00000359984 FSD1Q9BTV5 496 aa24.14■■□□□ 1.45
CLN3-205ENST00000359984 GNL3LQ9NVN8 582 aaKnown RBP24.14■■□□□ 1.45
CLN3-205ENST00000359984 C6orf229H3BNL8 230 aa24.13■■□□□ 1.45
CLN3-205ENST00000359984 DPP8Q6V1X1 898 aaPredicted RBP24.13■■□□□ 1.45
CLN3-205ENST00000359984 SPATA5Q8NB90 893 aa24.13■■□□□ 1.45
CLN3-205ENST00000359984 KIAA1551Q9HCM1 1747 aa24.13■■□□□ 1.45
CLN3-205ENST00000359984 AK9Q5TCS8 1911 aa24.13■■□□□ 1.45
CLN3-205ENST00000359984 AKAP11Q9UKA4 1901 aa24.13■■□□□ 1.45
CLN3-205ENST00000359984 KLHL34Q8N239 644 aa24.13■■□□□ 1.45
CLN3-205ENST00000359984 KBTBD3Q8NAB2 608 aa24.13■■□□□ 1.45
CLN3-205ENST00000359984 IQSEC3Q9UPP2 1182 aaPredicted RBP24.13■■□□□ 1.45
CLN3-205ENST00000359984 CYP2E1P05181 493 aaPredicted RBP24.11■■□□□ 1.45
CLN3-205ENST00000359984 PIM2Q9P1W9 311 aa24.11■■□□□ 1.45
CLN3-205ENST00000359984 DUOX1Q9NRD9 1551 aa24.11■■□□□ 1.45
CLN3-205ENST00000359984 C21orf2O43822 256 aa24.1■■□□□ 1.45
CLN3-205ENST00000359984 CC2D2BQ6DHV5 1058 aa24.1■■□□□ 1.45
CLN3-205ENST00000359984 MED23Q9ULK4 1368 aa24.09■■□□□ 1.45
CLN3-205ENST00000359984 ESYT1Q9BSJ8 1104 aa24.09■■□□□ 1.45
CLN3-205ENST00000359984 DIAPH3Q9NSV4 1193 aa24.09■■□□□ 1.45
CLN3-205ENST00000359984 SEMA3EO15041 775 aa24.09■■□□□ 1.45
CLN3-205ENST00000359984 MFAP1P55081 439 aaKnown RBP24.09■■□□□ 1.45
CLN3-205ENST00000359984 ZNF804AQ7Z570 1209 aa24.09■■□□□ 1.45
CLN3-205ENST00000359984 PIH1D3Q9NQM4 214 aaKnown RBP24.09■■□□□ 1.45
CLN3-205ENST00000359984 SNED1Q8TER0 1413 aa24.08■■□□□ 1.45
CLN3-205ENST00000359984 HIP1O00291 1037 aa24.08■■□□□ 1.45
CLN3-205ENST00000359984 DENND2AQ9ULE3 1009 aa24.08■■□□□ 1.45
CLN3-205ENST00000359984 COL1A1P02452 1464 aaPredicted RBP24.08■■□□□ 1.44
CLN3-205ENST00000359984 RFX7Q2KHR2 1363 aa24.07■■□□□ 1.44
CLN3-205ENST00000359984 ZBTB22O15209 634 aa24.07■■□□□ 1.44
CLN3-205ENST00000359984 TTF1Q15361 905 aaPredicted RBP24.07■■□□□ 1.44
CLN3-205ENST00000359984 CWC27Q6UX04 472 aaKnown RBP24.07■■□□□ 1.44
CLN3-205ENST00000359984 FRAT2O75474 233 aaPredicted RBP24.07■■□□□ 1.44
CLN3-205ENST00000359984 CHGBP05060 677 aa24.07■■□□□ 1.44
CLN3-205ENST00000359984 TICAM2Q86XR7 235 aa24.07■■□□□ 1.44
CLN3-205ENST00000359984 TDRD7Q8NHU6 1098 aaKnown RBP24.07■■□□□ 1.44
CLN3-205ENST00000359984 RTFDC1Q9BY42 306 aaPredicted RBP24.07■■□□□ 1.44
CLN3-205ENST00000359984 IL25Q9H293 177 aa24.07■■□□□ 1.44
CLN3-205ENST00000359984 RIMBP2O15034 1052 aa24.06■■□□□ 1.44
CLN3-205ENST00000359984 NMIQ13287 307 aaPredicted RBP24.06■■□□□ 1.44
CLN3-205ENST00000359984 FAM227BQ96M60 508 aa24.06■■□□□ 1.44
CLN3-205ENST00000359984 CD209Q9NNX6 404 aa24.06■■□□□ 1.44
CLN3-205ENST00000359984 WASHC4Q2M389 1173 aa24.05■■□□□ 1.44
CLN3-205ENST00000359984 CCDC93Q567U6 631 aa24.05■■□□□ 1.44
CLN3-205ENST00000359984 DALRD3Q5D0E6 543 aaKnown RBP24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms