RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ANKRD2Q9GZV1 360 aa17.76■□□□□ 0.43
PTPRF-201ENST00000359947 ZSWIM4Q9H7M6 989 aa17.76■□□□□ 0.43
PTPRF-201ENST00000359947 PLCH2O75038 1416 aa17.76■□□□□ 0.43
PTPRF-201ENST00000359947 GCOM1H8Y6P7 765 aaPredicted RBP17.76■□□□□ 0.43
PTPRF-201ENST00000359947 FAM13AO94988 1023 aa17.76■□□□□ 0.43
PTPRF-201ENST00000359947 MYZAPP0CAP1 466 aa17.76■□□□□ 0.43
PTPRF-201ENST00000359947 KANK3Q6NY19 840 aa17.76■□□□□ 0.43
PTPRF-201ENST00000359947 IMPG2Q9BZV3 1241 aa17.76■□□□□ 0.43
PTPRF-201ENST00000359947 TNPO1Q92973 898 aaKnown RBP17.76■□□□□ 0.43
PTPRF-201ENST00000359947 GNAQP50148 359 aa17.76■□□□□ 0.43
PTPRF-201ENST00000359947 TRAF1Q13077 416 aa17.76■□□□□ 0.43
PTPRF-201ENST00000359947 PLCG2P16885 1265 aa17.75■□□□□ 0.43
PTPRF-201ENST00000359947 FNBP4Q8N3X1 1017 aaPredicted RBP17.75■□□□□ 0.43
PTPRF-201ENST00000359947 C16orf45Q96MC5 204 aaPredicted RBP17.75■□□□□ 0.43
PTPRF-201ENST00000359947 BICC1Q9H694 974 aaKnown RBP17.75■□□□□ 0.43
PTPRF-201ENST00000359947 THOC2Q8NI27 1593 aaKnown RBP17.75■□□□□ 0.43
PTPRF-201ENST00000359947 LARGE2Q8N3Y3 721 aa17.75■□□□□ 0.43
PTPRF-201ENST00000359947 KIF18AQ8NI77 898 aa17.75■□□□□ 0.43
PTPRF-201ENST00000359947 TSNARE1Q96NA8 513 aa17.75■□□□□ 0.43
PTPRF-201ENST00000359947 TMOD4Q9NZQ9 345 aa17.75■□□□□ 0.43
PTPRF-201ENST00000359947 PTGS1P23219 599 aa17.75■□□□□ 0.43
PTPRF-201ENST00000359947 DHX58Q96C10 678 aa17.75■□□□□ 0.43
PTPRF-201ENST00000359947 PROCA1Q8NCQ7 364 aaPredicted RBP17.75■□□□□ 0.43
PTPRF-201ENST00000359947 EEF2P13639 858 aaKnown RBP17.74■□□□□ 0.43
PTPRF-201ENST00000359947 GPR162Q16538 588 aa17.74■□□□□ 0.43
PTPRF-201ENST00000359947 TEX11Q8IYF3 940 aa17.74■□□□□ 0.43
PTPRF-201ENST00000359947 DCAF5Q96JK2 942 aa17.74■□□□□ 0.43
PTPRF-201ENST00000359947 PUS7Q96PZ0 661 aaKnown RBP17.74■□□□□ 0.43
PTPRF-201ENST00000359947 PYM1Q9BRP8 204 aaKnown RBP17.74■□□□□ 0.43
PTPRF-201ENST00000359947 USP21Q9UK80 565 aa17.74■□□□□ 0.43
PTPRF-201ENST00000359947 DDX19AQ9NUU7 478 aaKnown RBP17.74■□□□□ 0.43
PTPRF-201ENST00000359947 H0YIN7 160 aa17.74■□□□□ 0.43
PTPRF-201ENST00000359947 TCP10Q12799 353 aa17.74■□□□□ 0.43
PTPRF-201ENST00000359947 USP37Q86T82 979 aa17.74■□□□□ 0.43
PTPRF-201ENST00000359947 IL27Q8NEV9 243 aa17.74■□□□□ 0.43
PTPRF-201ENST00000359947 UIMC1Q96RL1 719 aa17.74■□□□□ 0.43
PTPRF-201ENST00000359947 CHMP2AO43633 222 aa17.74■□□□□ 0.43
PTPRF-201ENST00000359947 TBC1D2Q9BYX2 928 aa17.74■□□□□ 0.43
PTPRF-201ENST00000359947 SMC1AQ14683 1233 aaKnown RBP17.73■□□□□ 0.43
PTPRF-201ENST00000359947 FCHSD1Q86WN1 690 aa17.73■□□□□ 0.43
PTPRF-201ENST00000359947 FSD2A1L4K1 749 aa17.73■□□□□ 0.43
PTPRF-201ENST00000359947 AKR1B10O60218 316 aa17.73■□□□□ 0.43
PTPRF-201ENST00000359947 MAP9Q49MG5 647 aa17.73■□□□□ 0.43
PTPRF-201ENST00000359947 RMND1Q9NWS8 449 aa17.73■□□□□ 0.43
PTPRF-201ENST00000359947 IKBKGQ9Y6K9 419 aa17.73■□□□□ 0.43
PTPRF-201ENST00000359947 GIMAP6Q6P9H5 292 aa17.73■□□□□ 0.43
PTPRF-201ENST00000359947 PRIM1P49642 420 aaKnown RBP17.73■□□□□ 0.43
PTPRF-201ENST00000359947 PPP1R14CQ8TAE6 165 aa17.72■□□□□ 0.43
PTPRF-201ENST00000359947 EYA1Q99502 592 aa17.72■□□□□ 0.43
PTPRF-201ENST00000359947 RNF216Q9NWF9 866 aaPredicted RBP17.72■□□□□ 0.43
PTPRF-201ENST00000359947 ORAI2Q96SN7 254 aa17.72■□□□□ 0.43
PTPRF-201ENST00000359947 RNMTO43148 476 aaKnown RBP17.72■□□□□ 0.43
PTPRF-201ENST00000359947 APOBRQ0VD83 1088 aa17.72■□□□□ 0.43
PTPRF-201ENST00000359947 A2MP01023 1474 aa17.72■□□□□ 0.43
PTPRF-201ENST00000359947 MAATS1Q7Z4T9 603 aa17.72■□□□□ 0.43
PTPRF-201ENST00000359947 GPHNQ9NQX3 736 aaPredicted RBP17.72■□□□□ 0.43
PTPRF-201ENST00000359947 ZNF165P49910 485 aa17.71■□□□□ 0.43
PTPRF-201ENST00000359947 PDE1AP54750 535 aa17.71■□□□□ 0.43
PTPRF-201ENST00000359947 RNF113AO15541 343 aaKnown RBP17.71■□□□□ 0.43
PTPRF-201ENST00000359947 GBP3Q9H0R5 595 aa17.71■□□□□ 0.43
PTPRF-201ENST00000359947 POLKQ9UBT6 870 aa17.71■□□□□ 0.43
PTPRF-201ENST00000359947 ALDH1L1O75891 902 aa17.71■□□□□ 0.43
PTPRF-201ENST00000359947 KRT2P35908 639 aa17.71■□□□□ 0.43
PTPRF-201ENST00000359947 DPP8Q6V1X1 898 aaPredicted RBP17.71■□□□□ 0.43
PTPRF-201ENST00000359947 TAF5LO75529 589 aa17.71■□□□□ 0.43
PTPRF-201ENST00000359947 CCDC172P0C7W6 258 aa17.71■□□□□ 0.43
PTPRF-201ENST00000359947 ITGA6P23229 1130 aa17.71■□□□□ 0.43
PTPRF-201ENST00000359947 HOXC9P31274 260 aa17.71■□□□□ 0.43
PTPRF-201ENST00000359947 KIAA0753Q2KHM9 967 aa17.71■□□□□ 0.43
PTPRF-201ENST00000359947 CNPY2Q9Y2B0 182 aa17.71■□□□□ 0.43
PTPRF-201ENST00000359947 PARP1P09874 1014 aaKnown RBP17.7■□□□□ 0.42
PTPRF-201ENST00000359947 GGA1Q9UJY5 639 aa17.7■□□□□ 0.42
PTPRF-201ENST00000359947 URB2Q14146 1524 aaKnown RBP17.7■□□□□ 0.42
PTPRF-201ENST00000359947 ATP8B2P98198 1209 aa17.7■□□□□ 0.42
PTPRF-201ENST00000359947 NAA15Q9BXJ9 866 aaKnown RBP17.7■□□□□ 0.42
PTPRF-201ENST00000359947 GNAT2P19087 354 aa17.7■□□□□ 0.42
PTPRF-201ENST00000359947 KRT79Q5XKE5 535 aa17.7■□□□□ 0.42
PTPRF-201ENST00000359947 MAP3K5Q99683 1374 aa17.7■□□□□ 0.42
PTPRF-201ENST00000359947 MYCLP12524 364 aaPredicted RBP17.7■□□□□ 0.42
PTPRF-201ENST00000359947 BMP2KLQ5H9B9 411 aa17.7■□□□□ 0.42
PTPRF-201ENST00000359947 MBD4O95243 580 aa17.7■□□□□ 0.42
PTPRF-201ENST00000359947 GIGYF2Q6Y7W6 1299 aaKnown RBP17.7■□□□□ 0.42
PTPRF-201ENST00000359947 CCDC50Q8IVM0 306 aa17.7■□□□□ 0.42
PTPRF-201ENST00000359947 TMX3Q96JJ7 454 aa17.7■□□□□ 0.42
PTPRF-201ENST00000359947 UBASH3AP57075 661 aa17.7■□□□□ 0.42
PTPRF-201ENST00000359947 ZSCAN16Q9H4T2 348 aaPredicted RBP17.7■□□□□ 0.42
PTPRF-201ENST00000359947 PTPDC1A2A3K4 754 aa17.69■□□□□ 0.42
PTPRF-201ENST00000359947 POLR3GO15318 223 aaPredicted RBP17.69■□□□□ 0.42
PTPRF-201ENST00000359947 GSTA5Q7RTV2 222 aa17.69■□□□□ 0.42
PTPRF-201ENST00000359947 MRPL50Q8N5N7 158 aaKnown RBP17.69■□□□□ 0.42
PTPRF-201ENST00000359947 PAIP2Q9BPZ3 127 aaKnown RBP17.69■□□□□ 0.42
PTPRF-201ENST00000359947 FERP16591 822 aa17.69■□□□□ 0.42
PTPRF-201ENST00000359947 IVNS1ABPQ9Y6Y0 642 aa17.69■□□□□ 0.42
PTPRF-201ENST00000359947 ADCY5O95622 1261 aa17.69■□□□□ 0.42
PTPRF-201ENST00000359947 ZNF594Q96JF6 807 aaPredicted RBP17.69■□□□□ 0.42
PTPRF-201ENST00000359947 FLT4P35916 1363 aa17.69■□□□□ 0.42
PTPRF-201ENST00000359947 DDX39AO00148 427 aaKnown RBP17.69■□□□□ 0.42
PTPRF-201ENST00000359947 MAEAQ7L5Y9 396 aa17.69■□□□□ 0.42
PTPRF-201ENST00000359947 TSPYL6Q8N831 410 aa17.69■□□□□ 0.42
PTPRF-201ENST00000359947 BCS1LQ9Y276 419 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms