RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 CDCA7Q9BWT1 371 aaPredicted RBP11.05□□□□□ -0.64
CHD3-202ENST00000358181 RASAL2Q9UJF2 1139 aa11.05□□□□□ -0.64
CHD3-202ENST00000358181 EXOC5O00471 708 aa11.05□□□□□ -0.64
CHD3-202ENST00000358181 TAF7Q15545 349 aaPredicted RBP11.05□□□□□ -0.64
CHD3-202ENST00000358181 CCDC12Q8WUD4 166 aaPredicted RBP11.05□□□□□ -0.64
CHD3-202ENST00000358181 U3KPZ7 1027 aaPredicted RBP11.05□□□□□ -0.64
CHD3-202ENST00000358181 ZSCAN12O43309 604 aa11.05□□□□□ -0.64
CHD3-202ENST00000358181 PLCB4Q15147 1175 aa11.05□□□□□ -0.64
CHD3-202ENST00000358181 UIMC1Q96RL1 719 aa11.05□□□□□ -0.64
CHD3-202ENST00000358181 PRKAG2Q9UGJ0 569 aa11.05□□□□□ -0.64
CHD3-202ENST00000358181 SWAP70Q9UH65 585 aa11.05□□□□□ -0.64
CHD3-202ENST00000358181 M0QZ92 97 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 CCDC129Q6ZRS4 1044 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 LCA5Q86VQ0 697 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 SUDS3Q9H7L9 328 aaPredicted RBP11.04□□□□□ -0.64
CHD3-202ENST00000358181 SYNDIG1Q9H7V2 258 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 SUFUQ9UMX1 484 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 MCM3P25205 808 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 PPP1R7Q15435 360 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 ERMNQ8TAM6 284 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 GANCQ8TET4 914 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 GCC1Q96CN9 775 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 MED10Q9BTT4 135 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 CHMP2AO43633 222 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 CHST3Q7LGC8 479 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 TMC6Q7Z403 805 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 DDX27Q96GQ7 796 aaKnown RBP11.04□□□□□ -0.64
CHD3-202ENST00000358181 HMGB2P26583 209 aaKnown RBP11.04□□□□□ -0.64
CHD3-202ENST00000358181 PRR16Q569H4 304 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 PICK1Q9NRD5 415 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 FAM114A2Q9NRY5 505 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 TMOD4Q9NZQ9 345 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 DAPK1P53355 1430 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 UBAP1LF5GYI3 381 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 DDX39AO00148 427 aaKnown RBP11.04□□□□□ -0.64
CHD3-202ENST00000358181 HGSO14964 777 aaPredicted RBP11.04□□□□□ -0.64
CHD3-202ENST00000358181 PNISRQ8TF01 805 aaKnown RBP11.04□□□□□ -0.64
CHD3-202ENST00000358181 CCDC196A0A1B0GTZ2 297 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 B4DLN1 442 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 SFPQP23246 707 aaKnown RBP eCLIP11.04□□□□□ -0.64
CHD3-202ENST00000358181 INPP1P49441 399 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 MRPL12P52815 198 aaKnown RBP11.04□□□□□ -0.64
CHD3-202ENST00000358181 PTPN14Q15678 1187 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 MAP3K11Q16584 847 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 NSMCE1Q8WV22 266 aa11.04□□□□□ -0.64
CHD3-202ENST00000358181 MCM2P49736 904 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 SETDB1Q15047 1291 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 BICDL2A1A5D9 508 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 RAB3GAP1Q15042 981 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 NFE2L2Q16236 605 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 FAM180AQ6UWF9 173 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 CABLES1Q8TDN4 633 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 FAM204AQ9H8W3 233 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 IVNS1ABPQ9Y6Y0 642 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 ERICH3Q5RHP9 1530 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 NOP56O00567 594 aaKnown RBP11.03□□□□□ -0.64
CHD3-202ENST00000358181 CCT6AP40227 531 aaKnown RBP11.03□□□□□ -0.64
CHD3-202ENST00000358181 SH2D4BQ5SQS7 431 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 USP37Q86T82 979 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 ZNF513Q8N8E2 541 aaPredicted RBP11.03□□□□□ -0.64
CHD3-202ENST00000358181 ADGRF5Q8IZF2 1346 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 MICU3Q86XE3 530 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.03□□□□□ -0.643e-20■■■□□ 17.1
CHD3-202ENST00000358181 PLIN2Q99541 437 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 BIRC3Q13489 604 aa11.03□□□□□ -0.64
CHD3-202ENST00000358181 UBA7P41226 1012 aa11.02□□□□□ -0.64
CHD3-202ENST00000358181 RYBPQ8N488 228 aaPredicted RBP11.02□□□□□ -0.64
CHD3-202ENST00000358181 NSRP1Q9H0G5 558 aaKnown RBP11.02□□□□□ -0.64
CHD3-202ENST00000358181 CASP2P42575 452 aa11.02□□□□□ -0.64
CHD3-202ENST00000358181 KIF22Q14807 665 aa11.02□□□□□ -0.64
CHD3-202ENST00000358181 NAP1L4Q99733 375 aaKnown RBP11.02□□□□□ -0.64
CHD3-202ENST00000358181 SUPT6HQ7KZ85 1726 aaKnown RBP11.02□□□□□ -0.65
CHD3-202ENST00000358181 TOPBP1Q92547 1522 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 KRT19P08727 400 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 STAT6P42226 847 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 ZNF569Q5MCW4 686 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 CEP85LQ5SZL2 805 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 SPAG5Q96R06 1193 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 ATP2A1O14983 1001 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 RRAGBQ5VZM2 374 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 CASC4Q6P4E1 433 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 ZNF467Q7Z7K2 595 aaPredicted RBP11.02□□□□□ -0.65
CHD3-202ENST00000358181 MORC4Q8TE76 937 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 SYCE3A1L190 88 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 MCM7P33993 719 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 IFI16Q16666 785 aaKnown RBP11.02□□□□□ -0.65
CHD3-202ENST00000358181 BSPRYQ5W0U4 402 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 ANKRD35Q8N283 1001 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 MSANTD4Q8NCY6 345 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 POMGNT1Q8WZA1 660 aa11.02□□□□□ -0.65
CHD3-202ENST00000358181 MYCLP12524 364 aaPredicted RBP11.01□□□□□ -0.65
CHD3-202ENST00000358181 KRT28Q7Z3Y7 464 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 CAPZA3Q96KX2 299 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 RIOK1Q9BRS2 568 aaKnown RBP11.01□□□□□ -0.65
CHD3-202ENST00000358181 VIMP08670 466 aaKnown RBP11.01□□□□□ -0.65
CHD3-202ENST00000358181 ITIH3Q06033 890 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 TCIRG1Q13488 830 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 DCAF17Q5H9S7 520 aaPredicted RBP11.01□□□□□ -0.65
CHD3-202ENST00000358181 DCLK2Q8N568 766 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 RBM46Q8TBY0 533 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms