RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.26□□□□□ -0.93
ZNF540-202ENST00000343599 NLRP10Q86W26 655 aa9.26□□□□□ -0.93
ZNF540-202ENST00000343599 MPNDQ8N594 471 aa9.26□□□□□ -0.93
ZNF540-202ENST00000343599 ZBTB38Q8NAP3 1195 aaPredicted RBP9.26□□□□□ -0.93
ZNF540-202ENST00000343599 UBN2Q6ZU65 1347 aa9.26□□□□□ -0.93
ZNF540-202ENST00000343599 IL1R1P14778 569 aa9.25□□□□□ -0.93
ZNF540-202ENST00000343599 PPP2R1AP30153 589 aa9.25□□□□□ -0.93
ZNF540-202ENST00000343599 AEBP1Q8IUX7 1158 aa9.25□□□□□ -0.93
ZNF540-202ENST00000343599 ANP32CO43423 234 aa9.25□□□□□ -0.93
ZNF540-202ENST00000343599 MYCNP04198 464 aaPredicted RBP9.25□□□□□ -0.93
ZNF540-202ENST00000343599 DDX10Q13206 875 aaKnown RBP9.25□□□□□ -0.93
ZNF540-202ENST00000343599 RNF186Q9NXI6 227 aa9.25□□□□□ -0.93
ZNF540-202ENST00000343599 BSDC1Q9NW68 430 aaPredicted RBP9.25□□□□□ -0.93
ZNF540-202ENST00000343599 MAST3O60307 1309 aa9.24□□□□□ -0.93
ZNF540-202ENST00000343599 FKTNO75072 461 aa9.24□□□□□ -0.93
ZNF540-202ENST00000343599 RGS22Q8NE09 1264 aa9.24□□□□□ -0.93
ZNF540-202ENST00000343599 DBF4Q9UBU7 674 aaPredicted RBP9.24□□□□□ -0.93
ZNF540-202ENST00000343599 RFX7Q2KHR2 1363 aa9.24□□□□□ -0.93
ZNF540-202ENST00000343599 CERS3Q8IU89 383 aa9.24□□□□□ -0.93
ZNF540-202ENST00000343599 PDCL3Q9H2J4 239 aa9.24□□□□□ -0.93
ZNF540-202ENST00000343599 NIP7Q9Y221 180 aaKnown RBP eCLIP9.24□□□□□ -0.93
ZNF540-202ENST00000343599 SPDYE4A6NLX3 237 aa9.23□□□□□ -0.93
ZNF540-202ENST00000343599 DDNO94850 711 aaPredicted RBP9.23□□□□□ -0.93
ZNF540-202ENST00000343599 LBX1P52954 281 aa9.23□□□□□ -0.93
ZNF540-202ENST00000343599 CXCL9Q07325 125 aa9.23□□□□□ -0.93
ZNF540-202ENST00000343599 FAM83AQ86UY5 434 aa9.23□□□□□ -0.93
ZNF540-202ENST00000343599 CSF1RP07333 972 aa9.23□□□□□ -0.93
ZNF540-202ENST00000343599 NFKBIBQ15653 356 aa9.23□□□□□ -0.93
ZNF540-202ENST00000343599 DDX46Q7L014 1031 aaKnown RBP9.23□□□□□ -0.93
ZNF540-202ENST00000343599 ARMC9Q7Z3E5 817 aa9.23□□□□□ -0.93
ZNF540-202ENST00000343599 DCPSQ96C86 337 aaKnown RBP9.23□□□□□ -0.93
ZNF540-202ENST00000343599 NAP1L2Q9ULW6 460 aaPredicted RBP9.23□□□□□ -0.93
ZNF540-202ENST00000343599 PDE8AO60658 829 aa9.22□□□□□ -0.93
ZNF540-202ENST00000343599 NF2P35240 595 aa9.22□□□□□ -0.93
ZNF540-202ENST00000343599 SEMA3EO15041 775 aa9.22□□□□□ -0.93
ZNF540-202ENST00000343599 CLCN1P35523 988 aa9.22□□□□□ -0.93
ZNF540-202ENST00000343599 NAP1L5Q96NT1 182 aaPredicted RBP9.22□□□□□ -0.93
ZNF540-202ENST00000343599 ZNF112Q9UJU3 913 aa9.22□□□□□ -0.93
ZNF540-202ENST00000343599 ALPK3Q96L96 1907 aa9.22□□□□□ -0.93
ZNF540-202ENST00000343599 PARP14Q460N5 1801 aa9.21□□□□□ -0.93
ZNF540-202ENST00000343599 CDK5RAP2Q96SN8 1893 aa9.21□□□□□ -0.93
ZNF540-202ENST00000343599 DPP8Q6V1X1 898 aaPredicted RBP9.21□□□□□ -0.93
ZNF540-202ENST00000343599 PXYLP1Q8TE99 480 aa9.21□□□□□ -0.93
ZNF540-202ENST00000343599 CT47B1P0C2W7 299 aaPredicted RBP9.21□□□□□ -0.94
ZNF540-202ENST00000343599 NRBP1Q9UHY1 535 aa9.21□□□□□ -0.94
ZNF540-202ENST00000343599 SERPINA10Q9UK55 444 aa9.21□□□□□ -0.94
ZNF540-202ENST00000343599 GTF2E1P29083 439 aaPredicted RBP9.2□□□□□ -0.94
ZNF540-202ENST00000343599 MKRN3Q13064 507 aaKnown RBP9.2□□□□□ -0.94
ZNF540-202ENST00000343599 TNFAIP1Q13829 316 aa9.2□□□□□ -0.94
ZNF540-202ENST00000343599 CCDC152Q4G0S7 254 aa9.2□□□□□ -0.94
ZNF540-202ENST00000343599 TICAM2Q86XR7 235 aa9.2□□□□□ -0.94
ZNF540-202ENST00000343599 LARGE2Q8N3Y3 721 aa9.2□□□□□ -0.94
ZNF540-202ENST00000343599 CCDC82Q8N4S0 544 aa9.2□□□□□ -0.94
ZNF540-202ENST00000343599 ZNF622Q969S3 477 aaKnown RBP eCLIP9.2□□□□□ -0.94
ZNF540-202ENST00000343599 KCNH6Q9H252 994 aa9.2□□□□□ -0.94
ZNF540-202ENST00000343599 RGS3P49796 1198 aa9.2□□□□□ -0.94
ZNF540-202ENST00000343599 SUPT20HL1Q3ZLR7 823 aa9.2□□□□□ -0.94
ZNF540-202ENST00000343599 SUSD4Q5VX71 490 aa9.2□□□□□ -0.94
ZNF540-202ENST00000343599 IPO4Q8TEX9 1081 aaKnown RBP9.2□□□□□ -0.94
ZNF540-202ENST00000343599 HDAC9Q9UKV0 1011 aa9.2□□□□□ -0.94
ZNF540-202ENST00000343599 HPS5Q9UPZ3 1129 aa9.2□□□□□ -0.94
ZNF540-202ENST00000343599 POLR2AP24928 1970 aaKnown RBP9.2□□□□□ -0.94
ZNF540-202ENST00000343599 GMPSP49915 693 aaPredicted RBP9.2□□□□□ -0.94
ZNF540-202ENST00000343599 HNRNPUQ00839 825 aaKnown RBP eCLIP9.2□□□□□ -0.94
ZNF540-202ENST00000343599 MYBBP1AQ9BQG0 1328 aaKnown RBP9.19□□□□□ -0.94
ZNF540-202ENST00000343599 DDX58O95786 925 aaKnown RBP9.19□□□□□ -0.94
ZNF540-202ENST00000343599 HDAC5Q9UQL6 1122 aa9.19□□□□□ -0.94
ZNF540-202ENST00000343599 CDCA5Q96FF9 252 aa9.19□□□□□ -0.94
ZNF540-202ENST00000343599 KCNH4Q9UQ05 1017 aa9.19□□□□□ -0.94
ZNF540-202ENST00000343599 PTPN22Q9Y2R2 807 aa9.19□□□□□ -0.94
ZNF540-202ENST00000343599 GREB1LQ9C091 1923 aaPredicted RBP9.19□□□□□ -0.94
ZNF540-202ENST00000343599 USP17L3A6NCW0 530 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 USP17L4A6NCW7 530 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 USP17L1Q7RTZ2 530 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 CNOT7Q9UIV1 285 aaKnown RBP9.18□□□□□ -0.94
ZNF540-202ENST00000343599 PPIP5K2O43314 1243 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 TBC1D12O60347 775 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 KIF4BQ2VIQ3 1234 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 C1orf53Q5VUE5 145 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 SPRYD7Q5W111 196 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 TBC1D16Q8TBP0 767 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 TBC1D22AQ8WUA7 517 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 TANGO6Q9C0B7 1094 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 SYNGAP1Q96PV0 1343 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 H7C1W4 665 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 RUNDC1Q96C34 613 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 CRISPLD2Q9H0B8 497 aa9.18□□□□□ -0.94
ZNF540-202ENST00000343599 PRKAR2BP31323 418 aa9.17□□□□□ -0.94
ZNF540-202ENST00000343599 NT5C2P49902 561 aa9.17□□□□□ -0.94
ZNF540-202ENST00000343599 GNAI1P63096 354 aa9.17□□□□□ -0.94
ZNF540-202ENST00000343599 NKX3-2P78367 333 aa9.17□□□□□ -0.94
ZNF540-202ENST00000343599 DDRGK1Q96HY6 314 aa9.17□□□□□ -0.94
ZNF540-202ENST00000343599 USP16Q9Y5T5 823 aa9.17□□□□□ -0.94
ZNF540-202ENST00000343599 WDHD1O75717 1129 aaPredicted RBP9.17□□□□□ -0.94
ZNF540-202ENST00000343599 DACT2Q5SW24 774 aa9.17□□□□□ -0.94
ZNF540-202ENST00000343599 ZNF333Q96JL9 665 aa9.17□□□□□ -0.94
ZNF540-202ENST00000343599 CSRNP1Q96S65 589 aa9.17□□□□□ -0.94
ZNF540-202ENST00000343599 METTL22Q9BUU2 404 aaPredicted RBP9.17□□□□□ -0.94
ZNF540-202ENST00000343599 ATRNL1Q5VV63 1379 aa9.17□□□□□ -0.94
ZNF540-202ENST00000343599 GPR25O00155 361 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms