RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 RRP7AQ9Y3A4 280 aaKnown RBP3.78□□□□□ -1.8
CSMD3-202ENST00000339701 SRGAP2BP0DMP2 458 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 ZNF76P36508 570 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 STXBP4Q6ZWJ1 553 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 RALYLQ86SE5 291 aaKnown RBP3.78□□□□□ -1.8
CSMD3-202ENST00000339701 ANKS4BQ8N8V4 417 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 FERMT2Q96AC1 680 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 WDR33Q9C0J8 1336 aaKnown RBP3.78□□□□□ -1.81
CSMD3-202ENST00000339701 LRRCC1Q9C099 1032 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 A0A1B0GUA9 196 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 SPTY2D1Q68D10 685 aaPredicted RBP3.77□□□□□ -1.81
CSMD3-202ENST00000339701 ACSBG1Q96GR2 724 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 CRACR2AQ9BSW2 395 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 NACAP1Q9BZK3 213 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 CTNNA3Q9UI47 895 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 WWC3Q9ULE0 1092 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 PLEKHG1Q9ULL1 1385 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 BAG3O95817 575 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 TAF7Q15545 349 aaPredicted RBP3.77□□□□□ -1.81
CSMD3-202ENST00000339701 MAP3K21Q5TCX8 1036 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 KIDINS220Q9ULH0 1771 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 SPATA31D1Q6ZQQ2 1576 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 TTC21BQ7Z4L5 1316 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 GOLGA8QA0A0J9YX86 632 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 GOLGA8OA6NCC3 632 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 GOLGA8NF8WBI6 632 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 DNAJC8O75937 253 aaPredicted RBP3.77□□□□□ -1.81
CSMD3-202ENST00000339701 SREBF2Q12772 1141 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 PPP2R5AQ15172 486 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 ZSCAN31Q96LW9 406 aaPredicted RBP3.77□□□□□ -1.81
CSMD3-202ENST00000339701 PANK3Q9H999 370 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 MKRN1Q9UHC7 482 aaKnown RBP3.77□□□□□ -1.81
CSMD3-202ENST00000339701 TRIM6-TRIM34B2RNG4 842 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 NBPF1Q3BBV0 1214 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 TCP11L2Q8N4U5 519 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 RAB3IPQ96QF0 476 aaPredicted RBP3.77□□□□□ -1.81
CSMD3-202ENST00000339701 MYD88Q99836 296 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.77□□□□□ -1.81
CSMD3-202ENST00000339701 TMEM94Q12767 1356 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 MAP2K1Q02750 393 aaPredicted RBP3.77□□□□□ -1.81
CSMD3-202ENST00000339701 CNKSR1Q969H4 720 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 MMP14P50281 582 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 GNAI1P63096 354 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 SPAG1Q07617 926 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 ZBED2Q9BTP6 218 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 NSRP1Q9H0G5 558 aaKnown RBP3.77□□□□□ -1.81
CSMD3-202ENST00000339701 RGL2O15211 777 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 TRIM37O94972 964 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 LMNB2Q03252 620 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 NAA16Q6N069 864 aaPredicted RBP3.77□□□□□ -1.81
CSMD3-202ENST00000339701 FAM177A1Q8N128 213 aaPredicted RBP3.77□□□□□ -1.81
CSMD3-202ENST00000339701 WDR66Q8TBY9 1149 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 RPGRIP1Q96KN7 1286 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 TULP4Q9NRJ4 1543 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 SLU7O95391 586 aaKnown RBP3.77□□□□□ -1.81
CSMD3-202ENST00000339701 LDHCP07864 332 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 STMN1P16949 149 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 CCDC178Q5BJE1 867 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 RAB23Q9ULC3 237 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 FAM184BQ9ULE4 1060 aa3.77□□□□□ -1.81
CSMD3-202ENST00000339701 IL16Q14005 1332 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 GSTO1P78417 241 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 NFE2L2Q16236 605 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 NFXL1Q6ZNB6 911 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 ZCRB1Q8TBF4 217 aaKnown RBP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 FRAT1Q92837 279 aaPredicted RBP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 FRMD3A2A2Y4 597 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 ATP5J2-PTCD1G3V325 749 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 ATP2A1O14983 1001 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 TAOK1Q7L7X3 1001 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 CCDC114Q96M63 670 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 C22orf23Q9BZE7 217 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 TBX22Q9Y458 520 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 MED1Q15648 1581 aaPredicted RBP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 JCADQ9P266 1359 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 GBP1P32455 592 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 DEKP35659 375 aaKnown RBP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 RASSF2P50749 326 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 NLGN1Q8N2Q7 840 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 CCDC150Q8NCX0 1101 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 KIF18AQ8NI77 898 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 KCNG4Q8TDN1 519 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 MAGEC2Q9UBF1 373 aaPredicted RBP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 MRVI1Q9Y6F6 885 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 APOBRQ0VD83 1088 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 CEP135Q66GS9 1140 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 HACE1Q8IYU2 909 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 CEP57L1Q8IYX8 460 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 C16orf45Q96MC5 204 aaPredicted RBP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 HOMER2Q9NSB8 354 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 TSPYL4Q9UJ04 414 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 PNMA2Q9UL42 364 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 FMNL1O95466 1100 aaPredicted RBP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 SUPT20HL1Q3ZLR7 823 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 ENGASEQ8NFI3 743 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 UIMC1Q96RL1 719 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 FEZ2Q9UHY8 353 aaPredicted RBP3.76□□□□□ -1.81
CSMD3-202ENST00000339701 CCDC61Q9Y6R9 512 aa3.76□□□□□ -1.81
CSMD3-202ENST00000339701 BTBD11A6QL63 1104 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms