RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CLASRPQ8N2M8 674 aaKnown RBP27.31■■□□□ 1.96
SDC3-202ENST00000339394 EAF2Q96CJ1 260 aaPredicted RBP27.31■■□□□ 1.96
SDC3-202ENST00000339394 EYA3Q99504 573 aa27.31■■□□□ 1.96
SDC3-202ENST00000339394 ZC3H12CQ9C0D7 883 aaKnown RBP27.31■■□□□ 1.96
SDC3-202ENST00000339394 KDM2BQ8NHM5 1336 aa27.31■■□□□ 1.96
SDC3-202ENST00000339394 NEUROD6Q96NK8 337 aa27.31■■□□□ 1.96
SDC3-202ENST00000339394 RIMBP2O15034 1052 aa27.3■■□□□ 1.96
SDC3-202ENST00000339394 IFIT1P09914 478 aaKnown RBP27.3■■□□□ 1.96
SDC3-202ENST00000339394 SLC5A1P13866 664 aa27.3■■□□□ 1.96
SDC3-202ENST00000339394 IRS2Q9Y4H2 1338 aa27.3■■□□□ 1.96
SDC3-202ENST00000339394 PRELPP51888 382 aa27.29■■□□□ 1.96
SDC3-202ENST00000339394 C15orf52Q6ZUT6 534 aaKnown RBP27.29■■□□□ 1.96
SDC3-202ENST00000339394 KIAA2012Q0VF49 1180 aa27.28■■□□□ 1.96
SDC3-202ENST00000339394 AOC3Q16853 763 aa27.28■■□□□ 1.96
SDC3-202ENST00000339394 CENPQQ7L2Z9 268 aaPredicted RBP27.28■■□□□ 1.96
SDC3-202ENST00000339394 AACSQ86V21 672 aa27.28■■□□□ 1.96
SDC3-202ENST00000339394 VPS33BQ9H267 617 aa27.28■■□□□ 1.96
SDC3-202ENST00000339394 MED23Q9ULK4 1368 aa27.28■■□□□ 1.96
SDC3-202ENST00000339394 ZNF609O15014 1411 aa27.28■■□□□ 1.96
SDC3-202ENST00000339394 PPIP5K2O43314 1243 aa27.27■■□□□ 1.96
SDC3-202ENST00000339394 IARSP41252 1262 aaKnown RBP27.27■■□□□ 1.96
SDC3-202ENST00000339394 CCDC8Q9H0W5 538 aaPredicted RBP27.27■■□□□ 1.96
SDC3-202ENST00000339394 DCAF8L1A6NGE4 600 aa27.26■■□□□ 1.96
SDC3-202ENST00000339394 ADORA1P30542 326 aa27.26■■□□□ 1.96
SDC3-202ENST00000339394 NUCB1Q02818 461 aa27.26■■□□□ 1.96
SDC3-202ENST00000339394 XAGE2Q96GT9 111 aa27.26■■□□□ 1.96
SDC3-202ENST00000339394 FAM84BQ96KN1 310 aaPredicted RBP27.26■■□□□ 1.96
SDC3-202ENST00000339394 ZBTB47Q9UFB7 747 aaPredicted RBP27.26■■□□□ 1.96
SDC3-202ENST00000339394 GYG1P46976 350 aa27.26■■□□□ 1.95
SDC3-202ENST00000339394 GTF3C3Q9Y5Q9 886 aa27.26■■□□□ 1.95
SDC3-202ENST00000339394 FER1L6Q2WGJ9 1857 aa27.25■■□□□ 1.95
SDC3-202ENST00000339394 LMNB1P20700 586 aa27.25■■□□□ 1.95
SDC3-202ENST00000339394 LARGE2Q8N3Y3 721 aa27.25■■□□□ 1.95
SDC3-202ENST00000339394 TLR7Q9NYK1 1049 aaKnown RBP27.25■■□□□ 1.95
SDC3-202ENST00000339394 DBNLQ9UJU6 430 aaKnown RBP27.25■■□□□ 1.95
SDC3-202ENST00000339394 A0A1B0GUL6 1792 aa27.24■■□□□ 1.95
SDC3-202ENST00000339394 IFIT2P09913 472 aaKnown RBP27.24■■□□□ 1.95
SDC3-202ENST00000339394 BCAMP50895 628 aa27.24■■□□□ 1.95
SDC3-202ENST00000339394 CAVIN4Q5BKX8 364 aa27.24■■□□□ 1.95
SDC3-202ENST00000339394 CHD1LQ86WJ1 897 aa27.24■■□□□ 1.95
SDC3-202ENST00000339394 DBNDD2Q9BQY9 259 aa27.24■■□□□ 1.95
SDC3-202ENST00000339394 LNPKQ9C0E8 428 aa27.24■■□□□ 1.95
SDC3-202ENST00000339394 DOK7Q18PE1 504 aa27.23■■□□□ 1.95
SDC3-202ENST00000339394 FBXO33Q7Z6M2 555 aa27.23■■□□□ 1.95
SDC3-202ENST00000339394 C16orf71Q8IYS4 520 aaPredicted RBP27.23■■□□□ 1.95
SDC3-202ENST00000339394 HIBADHP31937 336 aaKnown RBP27.22■■□□□ 1.95
SDC3-202ENST00000339394 VPS37DQ86XT2 251 aa27.22■■□□□ 1.95
SDC3-202ENST00000339394 GORABQ5T7V8 394 aa27.22■■□□□ 1.95
SDC3-202ENST00000339394 ZNF804AQ7Z570 1209 aa27.22■■□□□ 1.95
SDC3-202ENST00000339394 DBNDD1Q9H9R9 158 aa27.22■■□□□ 1.95
SDC3-202ENST00000339394 CCDC102BQ68D86 513 aa27.21■■□□□ 1.95
SDC3-202ENST00000339394 COA1Q9GZY4 146 aa27.21■■□□□ 1.95
SDC3-202ENST00000339394 G3V3G9 751 aa27.2■■□□□ 1.94
SDC3-202ENST00000339394 PHKA1P46020 1223 aa27.2■■□□□ 1.94
SDC3-202ENST00000339394 DCAF8Q5TAQ9 597 aa27.2■■□□□ 1.94
SDC3-202ENST00000339394 CD209Q9NNX6 404 aa27.2■■□□□ 1.94
SDC3-202ENST00000339394 JDP2Q8WYK2 163 aa27.19■■□□□ 1.94
SDC3-202ENST00000339394 ECE2O60344 883 aa27.18■■□□□ 1.94
SDC3-202ENST00000339394 PODNQ7Z5L7 613 aa27.18■■□□□ 1.94
SDC3-202ENST00000339394 NIM1KQ8IY84 436 aa27.18■■□□□ 1.94
SDC3-202ENST00000339394 OTUD7AQ8TE49 926 aaPredicted RBP27.18■■□□□ 1.94
SDC3-202ENST00000339394 CCDC158Q5M9N0 1113 aa27.18■■□□□ 1.94
SDC3-202ENST00000339394 C9orf131Q5VYM1 1079 aa27.18■■□□□ 1.94
SDC3-202ENST00000339394 RNF181Q9P0P0 153 aa27.18■■□□□ 1.94
SDC3-202ENST00000339394 COL4A5P29400 1685 aa27.17■■□□□ 1.94
SDC3-202ENST00000339394 IL1R1P14778 569 aa27.17■■□□□ 1.94
SDC3-202ENST00000339394 ZNRF3Q9ULT6 936 aa27.17■■□□□ 1.94
SDC3-202ENST00000339394 TDRD7Q8NHU6 1098 aaKnown RBP27.16■■□□□ 1.94
SDC3-202ENST00000339394 IQSEC3Q9UPP2 1182 aaPredicted RBP27.16■■□□□ 1.94
SDC3-202ENST00000339394 YDJCA8MPS7 323 aa27.15■■□□□ 1.94
SDC3-202ENST00000339394 KCNQ5Q9NR82 932 aa27.15■■□□□ 1.94
SDC3-202ENST00000339394 GNL3LQ9NVN8 582 aaKnown RBP27.15■■□□□ 1.94
SDC3-202ENST00000339394 TTC39AQ5SRH9 613 aa27.14■■□□□ 1.94
SDC3-202ENST00000339394 SALL3Q9BXA9 1300 aa27.14■■□□□ 1.94
SDC3-202ENST00000339394 FRAT2O75474 233 aaPredicted RBP27.14■■□□□ 1.93
SDC3-202ENST00000339394 FZD9O00144 591 aa27.13■■□□□ 1.93
SDC3-202ENST00000339394 MX1P20591 662 aa27.13■■□□□ 1.93
SDC3-202ENST00000339394 ARID4AP29374 1257 aaPredicted RBP27.13■■□□□ 1.93
SDC3-202ENST00000339394 ZNF512BQ96KM6 892 aaPredicted RBP27.13■■□□□ 1.93
SDC3-202ENST00000339394 ECHDC1Q9NTX5 307 aa27.13■■□□□ 1.93
SDC3-202ENST00000339394 UQCRFS1P1P0C7P4 283 aa27.12■■□□□ 1.93
SDC3-202ENST00000339394 PDE4AP27815 886 aa27.12■■□□□ 1.93
SDC3-202ENST00000339394 TSHZ3Q63HK5 1081 aa27.12■■□□□ 1.93
SDC3-202ENST00000339394 RASGRF1Q13972 1273 aa27.11■■□□□ 1.93
SDC3-202ENST00000339394 SCARF1Q14162 830 aa27.11■■□□□ 1.93
SDC3-202ENST00000339394 GPATCH3Q96I76 525 aa27.11■■□□□ 1.93
SDC3-202ENST00000339394 ARAP2Q8WZ64 1704 aa27.11■■□□□ 1.93
SDC3-202ENST00000339394 ZBTB22O15209 634 aa27.1■■□□□ 1.93
SDC3-202ENST00000339394 MCAMP43121 646 aa27.1■■□□□ 1.93
SDC3-202ENST00000339394 SEMA3EO15041 775 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 RAD17O75943 681 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 PDE1AP54750 535 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 GTF2IP78347 998 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 CXCL9Q07325 125 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 PLEKHM2Q8IWE5 1019 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 STAP2Q9UGK3 403 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 DENND2AQ9ULE3 1009 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 JAG2Q9Y219 1238 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 TTC41PQ6P2S7 1318 aa27.09■■□□□ 1.93
SDC3-202ENST00000339394 ATP5JP18859 108 aa27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms