RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 CDC5LQ99459 802 aaKnown RBP5.02□□□□□ -1.61
MCF2-201ENST00000338585 ANTXR1Q9H6X2 564 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 POLRMTO00411 1230 aaKnown RBP5.02□□□□□ -1.61
MCF2-201ENST00000338585 IFIT1P09914 478 aaKnown RBP5.02□□□□□ -1.61
MCF2-201ENST00000338585 PHKA1P46020 1223 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 PUM3Q15397 648 aaKnown RBP5.02□□□□□ -1.61
MCF2-201ENST00000338585 TTC39AQ5SRH9 613 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 MSL1Q68DK7 614 aa5.02□□□□□ -1.61
MCF2-201ENST00000338585 CD2BP2O95400 341 aaKnown RBP5.01□□□□□ -1.61
MCF2-201ENST00000338585 MCAMP43121 646 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 ZAP70P43403 619 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 RPS8P62241 208 aaKnown RBP5.01□□□□□ -1.61
MCF2-201ENST00000338585 FKBP4Q02790 459 aaKnown RBP eCLIP5.01□□□□□ -1.61
MCF2-201ENST00000338585 CCDC158Q5M9N0 1113 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 CCDC102BQ68D86 513 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 SEC62Q99442 399 aaKnown RBP5.01□□□□□ -1.61
MCF2-201ENST00000338585 TBC1D2Q9BYX2 928 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 PAG1Q9NWQ8 432 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 PALD1Q9ULE6 856 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 MINPP1Q9UNW1 487 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 RGPD3A6NKT7 1758 aaPredicted RBP5.01□□□□□ -1.61
MCF2-201ENST00000338585 RGPD4Q7Z3J3 1758 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 PTH1RQ03431 593 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 MMRN1Q13201 1228 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 ZNF589Q86UQ0 364 aaPredicted RBP5.01□□□□□ -1.61
MCF2-201ENST00000338585 KBTBD3Q8NAB2 608 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 LPIN2Q92539 896 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 PDGFDQ9GZP0 370 aaPredicted RBP5.01□□□□□ -1.61
MCF2-201ENST00000338585 LSG1Q9H089 658 aaKnown RBP5.01□□□□□ -1.61
MCF2-201ENST00000338585 BSDC1Q9NW68 430 aaPredicted RBP5.01□□□□□ -1.61
MCF2-201ENST00000338585 CLEC11AQ9Y240 323 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 A0A1B0GUL6 1792 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 SPDYE2BA6NHP3 402 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 MMP10P09238 476 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 SPDYE6P0CI01 402 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 SLC5A1P13866 664 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 KLRK1P26718 216 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 BCAMP50895 628 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 SPDYE2Q495Y8 402 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 CCDC129Q6ZRS4 1044 aa5.01□□□□□ -1.61
MCF2-201ENST00000338585 AKAP11Q9UKA4 1901 aa5□□□□□ -1.61
MCF2-201ENST00000338585 ARAP2Q8WZ64 1704 aa5□□□□□ -1.61
MCF2-201ENST00000338585 RAD50Q92878 1312 aa5□□□□□ -1.61
MCF2-201ENST00000338585 MED23Q9ULK4 1368 aa5□□□□□ -1.61
MCF2-201ENST00000338585 POTEB2H3BUK9 544 aa5□□□□□ -1.61
MCF2-201ENST00000338585 GYG1P46976 350 aa5□□□□□ -1.61
MCF2-201ENST00000338585 ST5P78524 1137 aa5□□□□□ -1.61
MCF2-201ENST00000338585 RASGRF1Q13972 1273 aa5□□□□□ -1.61
MCF2-201ENST00000338585 SLC15A2Q16348 729 aa5□□□□□ -1.61
MCF2-201ENST00000338585 CRY2Q49AN0 593 aa5□□□□□ -1.61
MCF2-201ENST00000338585 NLGN1Q8N2Q7 840 aa5□□□□□ -1.61
MCF2-201ENST00000338585 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5□□□□□ -1.61
MCF2-201ENST00000338585 RUFY2Q8WXA3 655 aa5□□□□□ -1.61
MCF2-201ENST00000338585 IQSEC3Q9UPP2 1182 aaPredicted RBP5□□□□□ -1.61
MCF2-201ENST00000338585 HIP1O00291 1037 aa5□□□□□ -1.61
MCF2-201ENST00000338585 EIF5BO60841 1220 aaKnown RBP5□□□□□ -1.61
MCF2-201ENST00000338585 CYP2E1P05181 493 aaPredicted RBP5□□□□□ -1.61
MCF2-201ENST00000338585 ARID4AP29374 1257 aaPredicted RBP5□□□□□ -1.61
MCF2-201ENST00000338585 KIAA1211Q6ZU35 1233 aa5□□□□□ -1.61
MCF2-201ENST00000338585 SPRYD3Q8NCJ5 442 aa5□□□□□ -1.61
MCF2-201ENST00000338585 FLAD1Q8NFF5 587 aa5□□□□□ -1.61
MCF2-201ENST00000338585 RPGRQ92834 1020 aaKnown RBP5□□□□□ -1.61
MCF2-201ENST00000338585 PIH1D3Q9NQM4 214 aaKnown RBP5□□□□□ -1.61
MCF2-201ENST00000338585 STK32BQ9NY57 414 aa5□□□□□ -1.61
MCF2-201ENST00000338585 HMG20BQ9P0W2 317 aa5□□□□□ -1.61
MCF2-201ENST00000338585 CCDC171Q6TFL3 1326 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 ANKRD31Q8N7Z5 1873 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 RFX7Q2KHR2 1363 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 HMGB2P26583 209 aaKnown RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 HSPA4P34932 840 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 SF3B2Q13435 895 aaKnown RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 GRAPQ13588 217 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 LCE2DQ5TA82 110 aaPredicted RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 RASEFQ8IZ41 740 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 GRAPLQ8TC17 118 aaPredicted RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 ZNF512BQ96KM6 892 aaPredicted RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 DAXXQ9UER7 740 aaPredicted RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 MYO5AQ9Y4I1 1855 aaKnown RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 M0R2C6 588 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 RNF113AO15541 343 aaKnown RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 BAG6P46379 1132 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 COL9A3Q14050 684 aaPredicted RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 BECN1Q14457 450 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 RABEP1Q15276 862 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 ZMYM1Q5SVZ6 1142 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 ILDR1Q86SU0 546 aaPredicted RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 TXNRD3Q86VQ6 643 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 SPATA5Q8NB90 893 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 OSBP2Q969R2 916 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 GPR101Q96P66 508 aaPredicted RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 UPF3BQ9BZI7 483 aaKnown RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 RBM8AQ9Y5S9 174 aaKnown RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 TAF6LQ9Y6J9 622 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 COL1A1P02452 1464 aaPredicted RBP4.99□□□□□ -1.61
MCF2-201ENST00000338585 MAST3O60307 1309 aa4.99□□□□□ -1.61
MCF2-201ENST00000338585 NRXN2Q9P2S2 1712 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 KLRG2A4D1S0 409 aaPredicted RBP4.98□□□□□ -1.61
MCF2-201ENST00000338585 IDH1O75874 414 aaKnown RBP4.98□□□□□ -1.61
MCF2-201ENST00000338585 UQCRFS1P1P0C7P4 283 aa4.98□□□□□ -1.61
MCF2-201ENST00000338585 MCCP23508 829 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms