RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 LRRFIP1Q32MZ4 808 aaKnown RBP9.59□□□□□ -0.87
HPS4-201ENST00000336873 CPSF1Q10570 1443 aaKnown RBP9.59□□□□□ -0.87
HPS4-201ENST00000336873 PDCL3Q9H2J4 239 aa9.59□□□□□ -0.87
HPS4-201ENST00000336873 CDK12Q9NYV4 1490 aaPredicted RBP9.58□□□□□ -0.88
HPS4-201ENST00000336873 GOLGA8FQ08AF8 430 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 GOLGA8DPQ0D2H9 430 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 SCRN1Q12765 414 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 ATP2B3Q16720 1220 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 DHX32Q7L7V1 743 aaKnown RBP9.58□□□□□ -0.88
HPS4-201ENST00000336873 EEF2KMTQ96G04 330 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 ZFP91Q96JP5 570 aaPredicted RBP9.58□□□□□ -0.88
HPS4-201ENST00000336873 PCMTD1Q96MG8 357 aaPredicted RBP9.58□□□□□ -0.88
HPS4-201ENST00000336873 ZSWIM6Q9HCJ5 1215 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 ASAP1Q9ULH1 1129 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 COBLO75128 1261 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 PHKG2P15735 406 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 AFMP43652 599 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 PTPN14Q15678 1187 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 UIMC1Q96RL1 719 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 NAT10Q9H0A0 1025 aaKnown RBP9.58□□□□□ -0.88
HPS4-201ENST00000336873 CRB1P82279 1406 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 RIOK3O14730 519 aaKnown RBP9.58□□□□□ -0.88
HPS4-201ENST00000336873 CYP27B1O15528 508 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 SLC3A2P08195 630 aaKnown RBP9.58□□□□□ -0.88
HPS4-201ENST00000336873 ERCC3P19447 782 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 U2AF2P26368 475 aaKnown RBP eCLIP9.58□□□□□ -0.881e-6■■□□□ 13.6
HPS4-201ENST00000336873 STX17P56962 302 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 HMGN5P82970 282 aaKnown RBP9.58□□□□□ -0.88
HPS4-201ENST00000336873 PTPN12Q05209 780 aaKnown RBP9.58□□□□□ -0.88
HPS4-201ENST00000336873 TMEM67Q5HYA8 995 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 MAP4K1Q92918 833 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 XAGE2Q96GT9 111 aa9.58□□□□□ -0.88
HPS4-201ENST00000336873 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.58□□□□□ -0.881e-6■■□□□ 12.5
HPS4-201ENST00000336873 STARD3NLO95772 234 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 CYP2E1P05181 493 aaPredicted RBP9.57□□□□□ -0.88
HPS4-201ENST00000336873 METAP2P50579 478 aaKnown RBP eCLIP9.57□□□□□ -0.88
HPS4-201ENST00000336873 MNS1Q8NEH6 495 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 RNF216Q9NWF9 866 aaPredicted RBP9.57□□□□□ -0.88
HPS4-201ENST00000336873 CLTCQ00610 1675 aaKnown RBP9.57□□□□□ -0.88
HPS4-201ENST00000336873 NECTIN1Q15223 517 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 OLFM4Q6UX06 510 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 ALG1Q9BT22 464 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 FAM170AA1A519 330 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 GOLGA8AA7E2F4 631 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 URI1O94763 535 aaPredicted RBP9.57□□□□□ -0.88
HPS4-201ENST00000336873 ATP2B2Q01814 1243 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 CTDSPL2Q05D32 466 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 FAM182BQ5T319 152 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 DCAF5Q96JK2 942 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 DDX19AQ9NUU7 478 aaKnown RBP9.57□□□□□ -0.88
HPS4-201ENST00000336873 IFNKQ9P0W0 207 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 PRDM4Q9UKN5 801 aa9.57□□□□□ -0.88
HPS4-201ENST00000336873 PIK3C2BO00750 1634 aa9.56□□□□□ -0.88
HPS4-201ENST00000336873 E7EWF7 191 aa9.56□□□□□ -0.88
HPS4-201ENST00000336873 POLA2Q14181 598 aa9.56□□□□□ -0.88
HPS4-201ENST00000336873 PLIN2Q99541 437 aa9.56□□□□□ -0.88
HPS4-201ENST00000336873 UBAC1Q9BSL1 405 aa9.56□□□□□ -0.88
HPS4-201ENST00000336873 SLC12A7Q9Y666 1083 aa9.56□□□□□ -0.88
HPS4-201ENST00000336873 GOLGB1Q14789 3259 aaKnown RBP9.56□□□□□ -0.88
HPS4-201ENST00000336873 ADCY9O60503 1353 aa9.56□□□□□ -0.88
HPS4-201ENST00000336873 HSPD1P10809 573 aaKnown RBP9.56□□□□□ -0.88
HPS4-201ENST00000336873 KBTBD3Q8NAB2 608 aa9.56□□□□□ -0.88
HPS4-201ENST00000336873 BTG4Q9NY30 223 aa9.56□□□□□ -0.88
HPS4-201ENST00000336873 CTNNA3Q9UI47 895 aa9.56□□□□□ -0.88
HPS4-201ENST00000336873 KCNJ14Q9UNX9 436 aa9.56□□□□□ -0.88
HPS4-201ENST00000336873 TCHHQ07283 1943 aa9.56□□□□□ -0.88
HPS4-201ENST00000336873 ANKRD18BA2A2Z9 1011 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 EYA2O00167 538 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 GPAA1O43292 621 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 MARCH6O60337 910 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 ITGA6P23229 1130 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 SFPQP23246 707 aaKnown RBP eCLIP9.55□□□□□ -0.88
HPS4-201ENST00000336873 IARSP41252 1262 aaKnown RBP9.55□□□□□ -0.88
HPS4-201ENST00000336873 ZNF827Q17R98 1081 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 MAGEB6Q8N7X4 407 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 CNNM3Q8NE01 707 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 WWC3Q9ULE0 1092 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 MAPK8IP1Q9UQF2 711 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 RNF113AO15541 343 aaKnown RBP9.55□□□□□ -0.88
HPS4-201ENST00000336873 MCM5P33992 734 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 IL15P40933 162 aaPredicted RBP9.55□□□□□ -0.88
HPS4-201ENST00000336873 NCOA7Q8NI08 942 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 CLIC6Q96NY7 704 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 DENND2AQ9ULE3 1009 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 RGS12O14924 1447 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 IRS4O14654 1257 aaPredicted RBP9.55□□□□□ -0.88
HPS4-201ENST00000336873 FGAP02671 866 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 ARMT1Q9H993 441 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 ANO10Q9NW15 660 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 HMG20BQ9P0W2 317 aa9.55□□□□□ -0.88
HPS4-201ENST00000336873 TOB2Q14106 344 aaPredicted RBP9.54□□□□□ -0.88
HPS4-201ENST00000336873 OSBP2Q969R2 916 aa9.54□□□□□ -0.88
HPS4-201ENST00000336873 KAZALD1Q96I82 304 aa9.54□□□□□ -0.88
HPS4-201ENST00000336873 ERBB3P21860 1342 aa9.54□□□□□ -0.88
HPS4-201ENST00000336873 SPTLC2O15270 562 aa9.54□□□□□ -0.88
HPS4-201ENST00000336873 POLR3GO15318 223 aaPredicted RBP9.54□□□□□ -0.88
HPS4-201ENST00000336873 SART3Q15020 963 aaKnown RBP9.54□□□□□ -0.88
HPS4-201ENST00000336873 C11orf57Q6ZUT1 292 aaPredicted RBP9.54□□□□□ -0.88
HPS4-201ENST00000336873 TRIM22Q8IYM9 498 aa9.54□□□□□ -0.88
HPS4-201ENST00000336873 TTC14Q96N46 770 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms