RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 NLRP3Q96P20 1036 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 UIMC1Q96RL1 719 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 RSPH14Q9UHP6 348 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 EHBP1L1Q8N3D4 1523 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 NCBP1Q09161 790 aaKnown RBP14.31□□□□□ -0.12
SDC3-201ENST00000336798 LMBR1LQ6UX01 489 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 IFT81Q8WYA0 676 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 MEIS3Q99687 375 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 MCM9Q9NXL9 1143 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 ZNF804AQ7Z570 1209 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 PLVAPQ9BX97 442 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 ODF2LQ9ULJ1 636 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 BACH1O14867 736 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 DCAF17Q5H9S7 520 aaPredicted RBP14.31□□□□□ -0.12
SDC3-201ENST00000336798 ARAP1Q96P48 1450 aa14.31□□□□□ -0.12
SDC3-201ENST00000336798 TPD52P55327 224 aaPredicted RBP14.3□□□□□ -0.12
SDC3-201ENST00000336798 USP37Q86T82 979 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 USP48Q86UV5 1035 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 TFCP2L1Q9NZI6 479 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 NSFL1CQ9UNZ2 370 aaKnown RBP14.3□□□□□ -0.12
SDC3-201ENST00000336798 POLA1P09884 1462 aaPredicted RBP14.3□□□□□ -0.12
SDC3-201ENST00000336798 ZCRB1Q8TBF4 217 aaKnown RBP14.3□□□□□ -0.12
SDC3-201ENST00000336798 UAP1Q16222 522 aaPredicted RBP14.3□□□□□ -0.12
SDC3-201ENST00000336798 MAP7D1Q3KQU3 841 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 PPP1R9BQ96SB3 815 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 CCDC94Q9BW85 323 aaPredicted RBP14.3□□□□□ -0.12
SDC3-201ENST00000336798 CTAGE15A4D2H0 777 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 CTAGE8P0CG41 777 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 RAPGEF1Q13905 1077 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 CTAGE6Q86UF2 777 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 CTAGE4Q8IX94 777 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 HMG20BQ9P0W2 317 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 ACEP12821 1306 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 SDSP20132 328 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 UBXN1Q04323 297 aa14.3□□□□□ -0.12
SDC3-201ENST00000336798 RRP36Q96EU6 259 aaKnown RBP14.3□□□□□ -0.12
SDC3-201ENST00000336798 TLDC2A0PJX2 215 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 GOLGA6L9A6NEM1 432 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 KRT5P13647 590 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 CLCN1P35523 988 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 EHBP1Q8NDI1 1231 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 TTC12Q9H892 705 aaPredicted RBP14.29□□□□□ -0.12
SDC3-201ENST00000336798 KCNK9Q9NPC2 374 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 CHMP2AO43633 222 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 SKILP12757 684 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 GUCA1BQ9UMX6 200 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 IGSF3O75054 1194 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 LMOD1P29536 600 aaPredicted RBP14.29□□□□□ -0.12
SDC3-201ENST00000336798 KRT9P35527 623 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.29□□□□□ -0.12
SDC3-201ENST00000336798 CDK13Q14004 1512 aaKnown RBP14.29□□□□□ -0.12
SDC3-201ENST00000336798 HSPA4P34932 840 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 DNM1Q05193 864 aaKnown RBP14.29□□□□□ -0.12
SDC3-201ENST00000336798 NMIQ13287 307 aaPredicted RBP14.29□□□□□ -0.12
SDC3-201ENST00000336798 RAB3GAP1Q15042 981 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 CCDC65Q8IXS2 484 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 LZTFL1Q9NQ48 299 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 CAMSAP2Q08AD1 1489 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 IFT140Q96RY7 1462 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 PSMA7O14818 248 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 EIF6P56537 245 aaKnown RBP14.29□□□□□ -0.12
SDC3-201ENST00000336798 APOBRQ0VD83 1088 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 MCMDC2Q4G0Z9 681 aa14.29□□□□□ -0.12
SDC3-201ENST00000336798 ZSCAN16Q9H4T2 348 aaPredicted RBP14.29□□□□□ -0.12
SDC3-201ENST00000336798 UBAP1LF5GYI3 381 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 SYT1P21579 422 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 PPP1R21Q6ZMI0 780 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 ARHGEF11O15085 1522 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 CCDC186Q7Z3E2 898 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 GPIHBP1Q8IV16 184 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 LRPPRCP42704 1394 aaKnown RBP14.28□□□□□ -0.12
SDC3-201ENST00000336798 TXNDC16Q9P2K2 825 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 FAM169AQ9Y6X4 670 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 SNAPC4Q5SXM2 1469 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 MSL1Q68DK7 614 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 ZGPATQ8N5A5 531 aaKnown RBP14.28□□□□□ -0.12
SDC3-201ENST00000336798 CTAGE1Q96RT6 745 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 GINS2Q9Y248 185 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 ABCC11Q96J66 1382 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 SMC1BQ8NDV3 1235 aa14.28□□□□□ -0.12
SDC3-201ENST00000336798 ZYXQ15942 572 aaKnown RBP14.27□□□□□ -0.12
SDC3-201ENST00000336798 DACT1Q9NYF0 836 aa14.27□□□□□ -0.12
SDC3-201ENST00000336798 PARP3Q9Y6F1 533 aa14.27□□□□□ -0.12
SDC3-201ENST00000336798 KRT2P35908 639 aa14.27□□□□□ -0.12
SDC3-201ENST00000336798 PRKG1Q13976 671 aa14.27□□□□□ -0.12
SDC3-201ENST00000336798 PPP1R7Q15435 360 aa14.27□□□□□ -0.12
SDC3-201ENST00000336798 DZIP3Q86Y13 1208 aaKnown RBP14.27□□□□□ -0.12
SDC3-201ENST00000336798 MRPS27Q92552 414 aaKnown RBP14.27□□□□□ -0.12
SDC3-201ENST00000336798 LRRC59Q96AG4 307 aaKnown RBP14.27□□□□□ -0.12
SDC3-201ENST00000336798 CFAP57Q96MR6 1250 aa14.27□□□□□ -0.12
SDC3-201ENST00000336798 MAK16Q9BXY0 300 aaKnown RBP14.27□□□□□ -0.12
SDC3-201ENST00000336798 CNNM2Q9H8M5 875 aa14.27□□□□□ -0.12
SDC3-201ENST00000336798 TACC1O75410 805 aa14.27□□□□□ -0.13
SDC3-201ENST00000336798 SARNPP82979 210 aaKnown RBP14.27□□□□□ -0.13
SDC3-201ENST00000336798 NSRP1Q9H0G5 558 aaKnown RBP14.27□□□□□ -0.13
SDC3-201ENST00000336798 RHOXF2BP0C7M4 288 aa14.27□□□□□ -0.13
SDC3-201ENST00000336798 ERCC5P28715 1186 aaPredicted RBP14.27□□□□□ -0.13
SDC3-201ENST00000336798 KRT79Q5XKE5 535 aa14.27□□□□□ -0.13
SDC3-201ENST00000336798 MAEAQ7L5Y9 396 aa14.27□□□□□ -0.13
SDC3-201ENST00000336798 RHOXF2Q9BQY4 288 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms