RNA–Protein interactions for RNA: ENST00000330295.9

CTHRC1-201, Transcript of collagen triple helix repeat containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTHRC1, Length 1,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1-201ENST00000330295 PODXL2Q9NZ53 605 aa19.58■□□□□ 0.72
CTHRC1-201ENST00000330295 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.58■□□□□ 0.72
CTHRC1-201ENST00000330295 FZD1Q9UP38 647 aa19.58■□□□□ 0.72
CTHRC1-201ENST00000330295 NR2E3Q9Y5X4 410 aa19.58■□□□□ 0.72
CTHRC1-201ENST00000330295 UFL1O94874 794 aa19.57■□□□□ 0.72
CTHRC1-201ENST00000330295 SH3TC2Q8TF17 1288 aa19.57■□□□□ 0.72
CTHRC1-201ENST00000330295 STXBP5LQ9Y2K9 1186 aa19.57■□□□□ 0.72
CTHRC1-201ENST00000330295 USP17L3A6NCW0 530 aa19.56■□□□□ 0.72
CTHRC1-201ENST00000330295 USP17L4A6NCW7 530 aa19.56■□□□□ 0.72
CTHRC1-201ENST00000330295 SF3B3Q15393 1217 aaKnown RBP19.56■□□□□ 0.72
CTHRC1-201ENST00000330295 CC2D1BQ5T0F9 858 aaKnown RBP19.56■□□□□ 0.72
CTHRC1-201ENST00000330295 ANKRD13DQ6ZTN6 518 aa19.56■□□□□ 0.72
CTHRC1-201ENST00000330295 USP17L1Q7RTZ2 530 aa19.56■□□□□ 0.72
CTHRC1-201ENST00000330295 PNISRQ8TF01 805 aaKnown RBP19.56■□□□□ 0.72
CTHRC1-201ENST00000330295 CLMNQ96JQ2 1002 aa19.56■□□□□ 0.72
CTHRC1-201ENST00000330295 ZNF646O15015 1829 aaPredicted RBP19.55■□□□□ 0.72
CTHRC1-201ENST00000330295 ZBTB7BO15156 539 aaPredicted RBP19.55■□□□□ 0.72
CTHRC1-201ENST00000330295 NPM3O75607 178 aaKnown RBP19.55■□□□□ 0.72
CTHRC1-201ENST00000330295 MAP3K11Q16584 847 aa19.55■□□□□ 0.72
CTHRC1-201ENST00000330295 APOBEC3FQ8IUX4 373 aaKnown RBP19.55■□□□□ 0.72
CTHRC1-201ENST00000330295 HSPA5P11021 654 aaKnown RBP19.54■□□□□ 0.72
CTHRC1-201ENST00000330295 EIF4G2P78344 907 aaKnown RBP eCLIP19.54■□□□□ 0.72
CTHRC1-201ENST00000330295 PDIA6Q15084 440 aa19.54■□□□□ 0.72
CTHRC1-201ENST00000330295 GPR153Q6NV75 609 aa19.54■□□□□ 0.72
CTHRC1-201ENST00000330295 OGFOD1Q8N543 542 aa19.54■□□□□ 0.72
CTHRC1-201ENST00000330295 DEFB123Q8N688 67 aa19.54■□□□□ 0.72
CTHRC1-201ENST00000330295 PTPN18Q99952 460 aa19.54■□□□□ 0.72
CTHRC1-201ENST00000330295 GGA1Q9UJY5 639 aa19.54■□□□□ 0.72
CTHRC1-201ENST00000330295 RPS8P62241 208 aaKnown RBP19.53■□□□□ 0.72
CTHRC1-201ENST00000330295 UBE2Q1Q7Z7E8 422 aa19.53■□□□□ 0.72
CTHRC1-201ENST00000330295 ANKIB1Q9P2G1 1089 aa19.53■□□□□ 0.72
CTHRC1-201ENST00000330295 SASH1O94885 1247 aa19.52■□□□□ 0.72
CTHRC1-201ENST00000330295 PODNQ7Z5L7 613 aa19.52■□□□□ 0.72
CTHRC1-201ENST00000330295 TESPA1A2RU30 521 aaPredicted RBP19.51■□□□□ 0.71
CTHRC1-201ENST00000330295 GJA5P36382 358 aa19.51■□□□□ 0.71
CTHRC1-201ENST00000330295 PROSER3Q2NL68 480 aa19.51■□□□□ 0.71
CTHRC1-201ENST00000330295 NKX2-3Q8TAU0 364 aa19.51■□□□□ 0.71
CTHRC1-201ENST00000330295 ZNF428Q96B54 188 aa19.51■□□□□ 0.71
CTHRC1-201ENST00000330295 COL1A1P02452 1464 aaPredicted RBP19.51■□□□□ 0.71
CTHRC1-201ENST00000330295 UNCXA6NJT0 531 aa19.5■□□□□ 0.71
CTHRC1-201ENST00000330295 ANXA1P04083 346 aa19.5■□□□□ 0.71
CTHRC1-201ENST00000330295 MTFR1Q15390 333 aa19.5■□□□□ 0.71
CTHRC1-201ENST00000330295 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.5■□□□□ 0.71
CTHRC1-201ENST00000330295 SSC5DA1L4H1 1573 aa19.49■□□□□ 0.71
CTHRC1-201ENST00000330295 PPP1R12BO60237 982 aaPredicted RBP19.49■□□□□ 0.71
CTHRC1-201ENST00000330295 Q7L0L9 218 aa19.49■□□□□ 0.71
CTHRC1-201ENST00000330295 MXD3Q9BW11 206 aa19.49■□□□□ 0.71
CTHRC1-201ENST00000330295 PER1O15534 1290 aaPredicted RBP19.48■□□□□ 0.71
CTHRC1-201ENST00000330295 AIMP1Q12904 312 aaKnown RBP19.48■□□□□ 0.71
CTHRC1-201ENST00000330295 COPS6Q7L5N1 327 aa19.48■□□□□ 0.71
CTHRC1-201ENST00000330295 FAM89AQ96GI7 184 aa19.48■□□□□ 0.71
CTHRC1-201ENST00000330295 ZFYVE28Q9HCC9 887 aa19.48■□□□□ 0.71
CTHRC1-201ENST00000330295 PRDM6Q9NQX0 595 aa19.48■□□□□ 0.71
CTHRC1-201ENST00000330295 STAP2Q9UGK3 403 aa19.48■□□□□ 0.71
CTHRC1-201ENST00000330295 ZSWIM8A7E2V4 1837 aa19.48■□□□□ 0.71
CTHRC1-201ENST00000330295 EIF2S2P20042 333 aaKnown RBP19.47■□□□□ 0.71
CTHRC1-201ENST00000330295 TAF1CQ15572 869 aaPredicted RBP19.47■□□□□ 0.71
CTHRC1-201ENST00000330295 DACT2Q5SW24 774 aa19.47■□□□□ 0.71
CTHRC1-201ENST00000330295 DEFB129Q9H1M3 183 aa19.47■□□□□ 0.71
CTHRC1-201ENST00000330295 MTMR10Q9NXD2 777 aa19.47■□□□□ 0.71
CTHRC1-201ENST00000330295 VCANP13611 3396 aa19.47■□□□□ 0.71
CTHRC1-201ENST00000330295 MYO3BQ8WXR4 1341 aa19.47■□□□□ 0.71
CTHRC1-201ENST00000330295 U2AF1L5P0DN76 240 aaPredicted RBP19.46■□□□□ 0.71
CTHRC1-201ENST00000330295 GJA8P48165 433 aa19.46■□□□□ 0.71
CTHRC1-201ENST00000330295 U2AF1Q01081 240 aaKnown RBP eCLIP19.46■□□□□ 0.71
CTHRC1-201ENST00000330295 XAGE3Q8WTP9 111 aa19.46■□□□□ 0.71
CTHRC1-201ENST00000330295 NUDCQ9Y266 331 aa19.46■□□□□ 0.71
CTHRC1-201ENST00000330295 MMP14P50281 582 aa19.45■□□□□ 0.7
CTHRC1-201ENST00000330295 CFAP53Q96M91 514 aa19.45■□□□□ 0.7
CTHRC1-201ENST00000330295 ARHGAP39Q9C0H5 1083 aa19.45■□□□□ 0.7
CTHRC1-201ENST00000330295 DLG5Q8TDM6 1919 aa19.45■□□□□ 0.7
CTHRC1-201ENST00000330295 GJB1P08034 283 aa19.44■□□□□ 0.7
CTHRC1-201ENST00000330295 PRMT2P55345 433 aa19.44■□□□□ 0.7
CTHRC1-201ENST00000330295 ZBED3Q96IU2 234 aaPredicted RBP19.44■□□□□ 0.7
CTHRC1-201ENST00000330295 SEC31BQ9NQW1 1179 aa19.44■□□□□ 0.7
CTHRC1-201ENST00000330295 XDHP47989 1333 aa19.44■□□□□ 0.7
CTHRC1-201ENST00000330295 EVI5O60447 810 aa19.43■□□□□ 0.7
CTHRC1-201ENST00000330295 GNRH1P01148 92 aa19.43■□□□□ 0.7
CTHRC1-201ENST00000330295 IREB2P48200 963 aaKnown RBP19.43■□□□□ 0.7
CTHRC1-201ENST00000330295 KIF22Q14807 665 aa19.43■□□□□ 0.7
CTHRC1-201ENST00000330295 STRIP1Q5VSL9 837 aa19.43■□□□□ 0.7
CTHRC1-201ENST00000330295 FBXW7Q969H0 707 aa19.43■□□□□ 0.7
CTHRC1-201ENST00000330295 MS4A4AQ96JQ5 239 aa19.43■□□□□ 0.7
CTHRC1-201ENST00000330295 FARP2O94887 1054 aaPredicted RBP19.42■□□□□ 0.7
CTHRC1-201ENST00000330295 LACTBP83111 547 aaPredicted RBP19.42■□□□□ 0.7
CTHRC1-201ENST00000330295 CNGB1Q14028 1251 aaPredicted RBP19.42■□□□□ 0.7
CTHRC1-201ENST00000330295 RTL5Q5HYW3 569 aaPredicted RBP19.42■□□□□ 0.7
CTHRC1-201ENST00000330295 ANKRD13AQ8IZ07 590 aa19.42■□□□□ 0.7
CTHRC1-201ENST00000330295 BRI3BPQ8WY22 251 aa19.42■□□□□ 0.7
CTHRC1-201ENST00000330295 OPTNQ96CV9 577 aa19.42■□□□□ 0.7
CTHRC1-201ENST00000330295 PPP2R3BQ9Y5P8 575 aa19.42■□□□□ 0.7
CTHRC1-201ENST00000330295 SPTBN5Q9NRC6 3674 aaKnown RBP19.41■□□□□ 0.7
CTHRC1-201ENST00000330295 IRS4O14654 1257 aaPredicted RBP19.41■□□□□ 0.7
CTHRC1-201ENST00000330295 ATP2B4P23634 1241 aa19.41■□□□□ 0.7
CTHRC1-201ENST00000330295 SUPT20HL1Q3ZLR7 823 aa19.41■□□□□ 0.7
CTHRC1-201ENST00000330295 USP2O75604 605 aaPredicted RBP19.4■□□□□ 0.7
CTHRC1-201ENST00000330295 CCL5P13501 91 aa19.4■□□□□ 0.7
CTHRC1-201ENST00000330295 BMP8BP34820 402 aa19.4■□□□□ 0.7
CTHRC1-201ENST00000330295 KIAA0825Q8IV33 1275 aa19.4■□□□□ 0.7
CTHRC1-201ENST00000330295 ISCA1Q9BUE6 129 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms